HEADER ADOMET BINDING PROTEIN 12-MAR-08 3CIX TITLE X-RAY STRUCTURE OF THE [FEFE]-HYDROGENASE MATURASE HYDE FROM TITLE 2 THERMOTOGA MARITIMA IN COMPLEX WITH THIOCYANATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FEFE-HYDROGENASE MATURASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 GENE: HYDE; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PT7-7 KEYWDS RADICAL ADOMET PROTEIN, FEFE-HYDROGENASE MATURATION, BETA BARREL, KEYWDS 2 FE4S4 CLUSTER, THIOCYANATE, FE2S2 CLUSTER, ADOMET BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.NICOLET,J.K.RUBACK,M.C.POSEWITZ,P.AMARA,C.MATHEVON,M.ATTA, AUTHOR 2 M.FONTECAVE,J.C.FONTECILLA-CAMPS REVDAT 9 30-OCT-24 3CIX 1 REMARK REVDAT 8 15-NOV-23 3CIX 1 REMARK REVDAT 7 01-NOV-23 3CIX 1 REMARK LINK REVDAT 6 25-OCT-17 3CIX 1 REMARK REVDAT 5 13-JUL-11 3CIX 1 VERSN REVDAT 4 24-FEB-09 3CIX 1 VERSN REVDAT 3 15-JUL-08 3CIX 1 JRNL REVDAT 2 15-APR-08 3CIX 1 TITLE REVDAT 1 08-APR-08 3CIX 0 JRNL AUTH Y.NICOLET,J.K.RUBACH,M.C.POSEWITZ,P.AMARA,C.MATHEVON,M.ATTA, JRNL AUTH 2 M.FONTECAVE,J.C.FONTECILLA-CAMPS JRNL TITL X-RAY STRUCTURE OF THE [FEFE]-HYDROGENASE MATURASE HYDE FROM JRNL TITL 2 THERMOTOGA MARITIMA JRNL REF J.BIOL.CHEM. V. 283 18861 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18400755 JRNL DOI 10.1074/JBC.M801161200 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 35563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1893 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1913 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.1740 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2731 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 209 REMARK 3 SOLVENT ATOMS : 366 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.201 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.936 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3052 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2166 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4172 ; 1.746 ; 2.067 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5300 ; 0.998 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 353 ;12.242 ; 5.057 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;32.602 ;23.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 518 ;11.999 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;13.636 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 494 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3139 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 573 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 585 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2443 ; 0.207 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1494 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1448 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 242 ; 0.184 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.313 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 76 ; 0.250 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.200 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1809 ; 1.200 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 702 ; 0.462 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2834 ; 1.650 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1403 ; 2.500 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1322 ; 3.541 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5732 ; 2.137 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 369 ; 5.854 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5143 ; 2.482 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CIX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046830. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37499 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 58.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.41300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NONE REMARK 200 STARTING MODEL: PDB ENTRY 3CIW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000 35%, 100MM TRISHCL, PH8.5, REMARK 280 100MM LISO4, 3MM CHAPS, 20MG/ML PROTEIN, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.46350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.03850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.86400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.03850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.46350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.86400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 348 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 2 OG1 CG2 REMARK 470 ARG A 4 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 5 CD OE1 OE2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 ARG A 13 CZ NH1 NH2 REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 ARG A 29 CZ NH1 NH2 REMARK 470 LYS A 37 CD CE NZ REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 GLU A 143 CD OE1 OE2 REMARK 470 LYS A 242 CE NZ REMARK 470 LYS A 309 CE NZ REMARK 470 LYS A 333 CD CE NZ REMARK 470 ARG A 336 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2800 O HOH A 2825 1.90 REMARK 500 O HOH A 2552 O HOH A 2817 2.12 REMARK 500 O HOH A 2590 O HOH A 2792 2.17 REMARK 500 O HOH A 2543 O HOH A 2721 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 78 43.10 -92.19 REMARK 500 GLU A 161 -61.09 77.12 REMARK 500 THR A 175 -156.91 -153.03 REMARK 500 ALA A 196 -152.72 -122.16 REMARK 500 ASN A 288 11.11 -142.02 REMARK 500 GLN A 304 75.33 -111.37 REMARK 500 CYS A 311 -9.76 82.02 REMARK 500 ASP A 337 -162.56 -125.45 REMARK 500 GLU A 346 -152.34 -138.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CPS A 1701 REMARK 610 SAT A 1722 REMARK 610 CPS A 1702 REMARK 610 CPS A 1703 REMARK 610 CPS A 1704 REMARK 610 CPS A 1705 REMARK 610 PEG A 1706 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A2460 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 63 SG REMARK 620 2 SF4 A2460 S1 115.9 REMARK 620 3 SF4 A2460 S2 119.4 106.4 REMARK 620 4 SF4 A2460 S4 105.3 103.4 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A2460 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 67 SG REMARK 620 2 SF4 A2460 S2 107.0 REMARK 620 3 SF4 A2460 S3 116.3 106.8 REMARK 620 4 SF4 A2460 S4 119.1 104.2 102.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A2460 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 70 SG REMARK 620 2 SF4 A2460 S1 120.2 REMARK 620 3 SF4 A2460 S2 109.2 105.4 REMARK 620 4 SF4 A2460 S3 110.3 104.5 106.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A1707 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 311 SG REMARK 620 2 FES A1707 S1 113.3 REMARK 620 3 FES A1707 S2 117.4 95.0 REMARK 620 4 CYS A 319 SG 106.2 112.7 112.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A1707 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 322 SG REMARK 620 2 FES A1707 S1 110.7 REMARK 620 3 FES A1707 S2 103.7 94.0 REMARK 620 4 HOH A2461 O 115.1 123.9 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A2460 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SAH A1501 N REMARK 620 2 SF4 A2460 S1 86.4 REMARK 620 3 SF4 A2460 S3 158.0 102.1 REMARK 620 4 SF4 A2460 S4 97.5 100.9 100.6 REMARK 620 5 SAH A1501 O 73.0 155.4 92.9 95.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 1712 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1713 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1714 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 2460 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPS A 1701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAT A 1722 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPS A 1702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPS A 1703 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPS A 1704 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPS A 1705 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 1707 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1706 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1716 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CIW RELATED DB: PDB REMARK 900 THE NATIVE STRUCTURE WITHOUT THE SECOND FES CLUSTER DBREF 3CIX A 1 348 UNP Q9X0Z6 Q9X0Z6_THEMA 1 348 SEQRES 1 A 348 MET THR GLY ARG GLU ILE LEU GLU LYS LEU GLU ARG ARG SEQRES 2 A 348 GLU PHE THR ARG GLU VAL LEU LYS GLU ALA LEU SER ILE SEQRES 3 A 348 ASN ASP ARG GLY PHE ASN GLU ALA LEU PHE LYS LEU ALA SEQRES 4 A 348 ASP GLU ILE ARG ARG LYS TYR VAL GLY ASP GLU VAL HIS SEQRES 5 A 348 ILE ARG ALA ILE ILE GLU PHE SER ASN VAL CYS ARG LYS SEQRES 6 A 348 ASN CYS LEU TYR CYS GLY LEU ARG ARG ASP ASN LYS ASN SEQRES 7 A 348 LEU LYS ARG TYR ARG MET THR PRO GLU GLU ILE VAL GLU SEQRES 8 A 348 ARG ALA ARG LEU ALA VAL GLN PHE GLY ALA LYS THR ILE SEQRES 9 A 348 VAL LEU GLN SER GLY GLU ASP PRO TYR TYR MET PRO ASP SEQRES 10 A 348 VAL ILE SER ASP ILE VAL LYS GLU ILE LYS LYS MET GLY SEQRES 11 A 348 VAL ALA VAL THR LEU SER LEU GLY GLU TRP PRO ARG GLU SEQRES 12 A 348 TYR TYR GLU LYS TRP LYS GLU ALA GLY ALA ASP ARG TYR SEQRES 13 A 348 LEU LEU ARG HIS GLU THR ALA ASN PRO VAL LEU HIS ARG SEQRES 14 A 348 LYS LEU ARG PRO ASP THR SER PHE GLU ASN ARG LEU ASN SEQRES 15 A 348 CSO LEU LEU THR LEU LYS GLU LEU GLY TYR GLU THR GLY SEQRES 16 A 348 ALA GLY SER MET VAL GLY LEU PRO GLY GLN THR ILE ASP SEQRES 17 A 348 ASP LEU VAL ASP ASP LEU LEU PHE LEU LYS GLU HIS ASP SEQRES 18 A 348 PHE ASP MET VAL GLY ILE GLY PRO PHE ILE PRO HIS PRO SEQRES 19 A 348 ASP THR PRO LEU ALA ASN GLU LYS LYS GLY ASP PHE THR SEQRES 20 A 348 LEU THR LEU LYS MET VAL ALA LEU THR ARG ILE LEU LEU SEQRES 21 A 348 PRO ASP SER ASN ILE PRO ALA THR THR ALA MET GLY THR SEQRES 22 A 348 ILE VAL PRO GLY GLY ARG GLU ILE THR LEU ARG CYS GLY SEQRES 23 A 348 ALA ASN VAL ILE MET PRO ASN TRP THR PRO SER PRO TYR SEQRES 24 A 348 ARG GLN LEU TYR GLN LEU TYR PRO GLY LYS ILE CYS VAL SEQRES 25 A 348 PHE GLU LYS ASP THR ALA CYS ILE PRO CYS VAL MET LYS SEQRES 26 A 348 MET ILE GLU LEU LEU GLY ARG LYS PRO GLY ARG ASP TRP SEQRES 27 A 348 GLY GLY ARG LYS ARG VAL PHE GLU THR VAL MODRES 3CIX CSO A 183 CYS S-HYDROXYCYSTEINE HET CSO A 183 7 HET SCN A1712 3 HET CL A1713 2 HET CL A1714 1 HET SF4 A2460 8 HET SAH A1501 26 HET CPS A1701 36 HET SAT A1722 7 HET CPS A1702 29 HET CPS A1703 31 HET CPS A1704 29 HET CPS A1705 22 HET FES A1707 4 HET PEG A1706 6 HET GOL A1716 6 HETNAM CSO S-HYDROXYCYSTEINE HETNAM SCN THIOCYANATE ION HETNAM CL CHLORIDE ION HETNAM SF4 IRON/SULFUR CLUSTER HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM CPS 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1- HETNAM 2 CPS PROPANESULFONATE HETNAM SAT SULFOACETIC ACID HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETSYN CPS CHAPS HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 SCN C N S 1- FORMUL 3 CL 2(CL 1-) FORMUL 5 SF4 FE4 S4 FORMUL 6 SAH C14 H20 N6 O5 S FORMUL 7 CPS 5(C32 H58 N2 O7 S) FORMUL 8 SAT C2 H4 O5 S FORMUL 13 FES FE2 S2 FORMUL 14 PEG C4 H10 O3 FORMUL 15 GOL C3 H8 O3 FORMUL 16 HOH *366(H2 O) HELIX 1 1 THR A 2 ARG A 12 1 11 HELIX 2 2 THR A 16 ILE A 26 1 11 HELIX 3 3 ASP A 28 GLY A 48 1 21 HELIX 4 4 THR A 85 PHE A 99 1 15 HELIX 5 5 ASP A 111 MET A 115 5 5 HELIX 6 6 PRO A 116 LYS A 128 1 13 HELIX 7 7 PRO A 141 ALA A 151 1 11 HELIX 8 8 ASN A 164 ARG A 172 1 9 HELIX 9 9 SER A 176 LEU A 190 1 15 HELIX 10 10 THR A 206 ASP A 221 1 16 HELIX 11 11 ASP A 245 LEU A 260 1 16 HELIX 12 12 THR A 268 VAL A 275 1 8 HELIX 13 13 GLY A 277 ARG A 284 1 8 HELIX 14 14 TYR A 299 TYR A 303 5 5 HELIX 15 15 ALA A 318 LEU A 330 1 13 SHEET 1 A 7 MET A 224 VAL A 225 0 SHEET 2 A 7 GLU A 193 ALA A 196 1 N ALA A 196 O MET A 224 SHEET 3 A 7 ARG A 155 LEU A 157 1 N TYR A 156 O GLY A 195 SHEET 4 A 7 ALA A 132 SER A 136 1 N LEU A 135 O LEU A 157 SHEET 5 A 7 THR A 103 SER A 108 1 N ILE A 104 O THR A 134 SHEET 6 A 7 GLU A 50 SER A 60 1 N ALA A 55 O VAL A 105 SHEET 7 A 7 VAL A 289 ILE A 290 1 O ILE A 290 N ARG A 54 SHEET 1 B 7 MET A 224 VAL A 225 0 SHEET 2 B 7 GLU A 193 ALA A 196 1 N ALA A 196 O MET A 224 SHEET 3 B 7 ARG A 155 LEU A 157 1 N TYR A 156 O GLY A 195 SHEET 4 B 7 ALA A 132 SER A 136 1 N LEU A 135 O LEU A 157 SHEET 5 B 7 THR A 103 SER A 108 1 N ILE A 104 O THR A 134 SHEET 6 B 7 GLU A 50 SER A 60 1 N ALA A 55 O VAL A 105 SHEET 7 B 7 LYS A 333 PRO A 334 1 O LYS A 333 N VAL A 51 SHEET 1 C 2 MET A 199 VAL A 200 0 SHEET 2 C 2 GLY A 228 PRO A 229 1 O GLY A 228 N VAL A 200 LINK C ASN A 182 N CSO A 183 1555 1555 1.33 LINK C CSO A 183 N LEU A 184 1555 1555 1.34 LINK SG CYS A 63 FE3 SF4 A2460 1555 1555 2.26 LINK SG CYS A 67 FE1 SF4 A2460 1555 1555 2.42 LINK SG CYS A 70 FE4 SF4 A2460 1555 1555 2.29 LINK SG CYS A 311 FE1 FES A1707 1555 1555 2.32 LINK SG CYS A 319 FE1 FES A1707 1555 1555 2.56 LINK SG CYS A 322 FE2 FES A1707 1555 1555 2.34 LINK N SAH A1501 FE2 SF4 A2460 1555 1555 2.33 LINK O SAH A1501 FE2 SF4 A2460 1555 1555 2.30 LINK FE2 FES A1707 O HOH A2461 1555 1555 2.06 CISPEP 1 MET A 115 PRO A 116 0 -6.73 CISPEP 2 SER A 297 PRO A 298 0 2.73 SITE 1 AC1 3 ARG A 54 THR A 134 ARG A 155 SITE 1 AC2 7 ARG A 159 THR A 268 THR A 269 ALA A 270 SITE 2 AC2 7 TYR A 306 HOH A2802 HOH A2825 SITE 1 AC3 3 ARG A 159 HOH A2604 HOH A2826 SITE 1 AC4 4 CYS A 63 CYS A 67 CYS A 70 GLY A 109 SITE 1 AC5 18 TYR A 69 SER A 108 SER A 136 ARG A 159 SITE 2 AC5 18 GLU A 161 ARG A 180 MET A 199 PRO A 229 SITE 3 AC5 18 ILE A 231 TYR A 303 LEU A 305 TYR A 306 SITE 4 AC5 18 HOH A2472 HOH A2478 HOH A2480 HOH A2489 SITE 5 AC5 18 HOH A2526 HOH A2802 SITE 1 AC6 15 GLN A 98 PHE A 99 GLY A 100 GLU A 280 SITE 2 AC6 15 ARG A 284 MET A 324 LEU A 329 LEU A 330 SITE 3 AC6 15 HOH A2469 HOH A2504 HOH A2554 HOH A2566 SITE 4 AC6 15 HOH A2684 HOH A2774 HOH A2793 SITE 1 AC7 4 LYS A 170 SER A 297 LYS A 315 ASP A 316 SITE 1 AC8 10 LYS A 37 ASP A 40 ARG A 284 THR A 317 SITE 2 AC8 10 HOH A2551 HOH A2558 HOH A2608 HOH A2636 SITE 3 AC8 10 HOH A2655 HOH A2661 SITE 1 AC9 8 ARG A 29 GLU A 33 PHE A 246 THR A 247 SITE 2 AC9 8 LEU A 250 HOH A2553 HOH A2557 HOH A2563 SITE 1 BC1 8 ARG A 29 LYS A 315 THR A 317 ALA A 318 SITE 2 BC1 8 HOH A2592 HOH A2686 HOH A2689 HOH A2758 SITE 1 BC2 9 LYS A 128 MET A 324 LYS A 325 GLU A 328 SITE 2 BC2 9 HOH A2669 HOH A2702 HOH A2736 HOH A2737 SITE 3 BC2 9 HOH A2774 SITE 1 BC3 5 ARG A 279 CYS A 311 CYS A 319 CYS A 322 SITE 2 BC3 5 HOH A2461 SITE 1 BC4 5 ASP A 337 TRP A 338 GLY A 339 GLY A 340 SITE 2 BC4 5 LYS A 342 SITE 1 BC5 5 LYS A 243 GLY A 244 ASP A 245 PHE A 246 SITE 2 BC5 5 HOH A2542 CRYST1 50.927 79.728 86.077 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019636 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012543 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011617 0.00000