HEADER TRANSCRIPTION REGULATOR 12-MAR-08 3CJD TITLE CRYSTAL STRUCTURE OF PUTATIVE TETR TRANSCRIPTIONAL REGULATOR TITLE 2 (YP_510936.1) FROM JANNASCHIA SP. CCS1 AT 1.79 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, TETR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JANNASCHIA SP.; SOURCE 3 ORGANISM_TAXID: 290400; SOURCE 4 STRAIN: CCS1; SOURCE 5 GENE: YP_510936.1, JANN_2994; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_510936.1, PUTATIVE TETR TRANSCRIPTIONAL REGULATOR, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, DNA-BINDING, TRANSCRIPTION REGULATION, KEYWDS 4 TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3CJD 1 REMARK SEQADV REVDAT 5 24-JUL-19 3CJD 1 REMARK LINK REVDAT 4 25-OCT-17 3CJD 1 REMARK REVDAT 3 13-JUL-11 3CJD 1 VERSN REVDAT 2 24-FEB-09 3CJD 1 VERSN REVDAT 1 01-APR-08 3CJD 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE TETR TRANSCRIPTIONAL REGULATOR JRNL TITL 2 (YP_510936.1) FROM JANNASCHIA SP. CCS1 AT 1.79 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.8 REMARK 3 NUMBER OF REFLECTIONS : 32777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1640 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1127 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 41.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2821 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 239 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.43000 REMARK 3 B22 (A**2) : -1.27000 REMARK 3 B33 (A**2) : -1.11000 REMARK 3 B12 (A**2) : 0.24000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : -0.19000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.257 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2932 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2015 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3965 ; 1.835 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4903 ; 1.682 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 368 ; 3.178 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;28.748 ;23.282 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 489 ; 9.115 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;11.316 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 450 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3249 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 596 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 611 ; 0.159 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1958 ; 0.114 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1402 ; 0.140 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1431 ; 0.069 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 182 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.104 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 22 ; 0.215 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.097 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2191 ; 1.674 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 740 ; 0.281 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2900 ; 2.263 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1195 ; 3.245 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1061 ; 4.436 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 75 REMARK 3 RESIDUE RANGE : A 84 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5820 -9.7510 44.3750 REMARK 3 T TENSOR REMARK 3 T11: -0.0661 T22: -0.0337 REMARK 3 T33: 0.0078 T12: -0.0053 REMARK 3 T13: 0.0185 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.5418 L22: 0.7145 REMARK 3 L33: 2.0867 L12: -0.2517 REMARK 3 L13: -0.1597 L23: 0.5750 REMARK 3 S TENSOR REMARK 3 S11: -0.0403 S12: 0.0442 S13: 0.0055 REMARK 3 S21: -0.0346 S22: -0.0167 S23: 0.0377 REMARK 3 S31: 0.1405 S32: -0.0550 S33: 0.0570 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 77 REMARK 3 RESIDUE RANGE : B 84 B 196 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8860 14.7060 45.6590 REMARK 3 T TENSOR REMARK 3 T11: -0.0571 T22: -0.0313 REMARK 3 T33: -0.0385 T12: 0.0011 REMARK 3 T13: -0.0313 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 1.1076 L22: 0.6795 REMARK 3 L33: 1.9995 L12: -0.3376 REMARK 3 L13: -0.0249 L23: -0.6737 REMARK 3 S TENSOR REMARK 3 S11: 0.0462 S12: 0.0837 S13: -0.0180 REMARK 3 S21: -0.0067 S22: -0.0244 S23: -0.0324 REMARK 3 S31: -0.1923 S32: 0.0442 S33: -0.0219 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. STEARIC ACID (STE) HAS BEEN MODELED IN EACH MONOMER BASED ON REMARK 3 THE SHAPE OF THE DENSITY. HOWEVER, THIS COULD BE SOME OTHER REMARK 3 LIGAND. REMARK 3 5. THE NOMINAL RESOLUTION IS 1.90 A WITH 2943 OBSERVED REFLECTIONS REMARK 3 BETWEEN 1.90-1.79 (46.8% COMPLETE FOR THIS SHELL) INCLUDED IN REMARK 3 THE REFINEMENT. REMARK 4 REMARK 4 3CJD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97961 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32780 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 29.801 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 41.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.75500 REMARK 200 R SYM FOR SHELL (I) : 0.75500 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.457M AMMONIUM DIHYDROGEN REMARK 280 PHOSPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE CRYSTAL PACKING ANALYSIS SUPPORTS REMARK 300 THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 VAL A 5 REMARK 465 GLU A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 ALA A 76 REMARK 465 VAL A 77 REMARK 465 VAL A 78 REMARK 465 ALA A 79 REMARK 465 ASP A 80 REMARK 465 GLY A 81 REMARK 465 GLN A 82 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 LYS B 4 REMARK 465 VAL B 5 REMARK 465 GLU B 6 REMARK 465 ALA B 7 REMARK 465 ARG B 8 REMARK 465 LYS B 9 REMARK 465 VAL B 78 REMARK 465 ALA B 79 REMARK 465 ASP B 80 REMARK 465 GLY B 81 REMARK 465 GLN B 82 REMARK 465 ASP B 83 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 89 CD NE CZ NH1 NH2 REMARK 470 GLU A 147 CD OE1 OE2 REMARK 470 ARG B 35 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 182 CG CD OE1 OE2 REMARK 470 ARG B 197 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 69 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 104 65.45 -119.90 REMARK 500 PHE A 145 72.92 -116.72 REMARK 500 PHE B 145 71.06 -117.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STE A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STE A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 377925 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3CJD A 1 197 UNP Q28N01 Q28N01_JANSC 1 197 DBREF 3CJD B 1 197 UNP Q28N01 Q28N01_JANSC 1 197 SEQADV 3CJD GLY A 0 UNP Q28N01 EXPRESSION TAG SEQADV 3CJD GLY B 0 UNP Q28N01 EXPRESSION TAG SEQRES 1 A 198 GLY MSE ALA GLY LYS VAL GLU ALA ARG LYS ALA ALA LEU SEQRES 2 A 198 ARG GLU LYS LEU ILE ASP LEU ALA GLU ALA GLN ILE GLU SEQRES 3 A 198 ALA GLU GLY LEU ALA SER LEU ARG ALA ARG GLU LEU ALA SEQRES 4 A 198 ARG GLN ALA ASP CYS ALA VAL GLY ALA ILE TYR THR HIS SEQRES 5 A 198 PHE GLN ASP LEU ASN ALA LEU THR LEU GLU VAL ASN GLY SEQRES 6 A 198 ARG THR PHE ALA ARG LEU GLY ALA ALA VAL GLY ALA VAL SEQRES 7 A 198 VAL ALA ASP GLY GLN ASP ASP HIS PRO ASN GLU ARG LEU SEQRES 8 A 198 ILE ALA MSE SER HIS ALA TYR LEU ALA PHE ALA ARG GLU SEQRES 9 A 198 HIS PRO LYS LEU TRP ARG ALA LEU PHE ASP VAL GLU MSE SEQRES 10 A 198 ARG SER ASP GLY PRO VAL PRO GLN TRP TYR GLY HIS ALA SEQRES 11 A 198 MSE ALA GLN LEU PHE SER TYR ILE THR THR PRO LEU ALA SEQRES 12 A 198 LYS ILE PHE PRO GLU SER ASP ASP ALA GLU LEU ASP LEU SEQRES 13 A 198 MSE THR ARG THR LEU PHE SER SER VAL HIS GLY ILE VAL SEQRES 14 A 198 LEU LEU GLY LEU GLU ASN ARG ILE SER GLY VAL PRO GLY SEQRES 15 A 198 GLU GLN LEU LYS THR MSE ILE ARG LEU LEU LEU GLU GLN SEQRES 16 A 198 VAL GLY ARG SEQRES 1 B 198 GLY MSE ALA GLY LYS VAL GLU ALA ARG LYS ALA ALA LEU SEQRES 2 B 198 ARG GLU LYS LEU ILE ASP LEU ALA GLU ALA GLN ILE GLU SEQRES 3 B 198 ALA GLU GLY LEU ALA SER LEU ARG ALA ARG GLU LEU ALA SEQRES 4 B 198 ARG GLN ALA ASP CYS ALA VAL GLY ALA ILE TYR THR HIS SEQRES 5 B 198 PHE GLN ASP LEU ASN ALA LEU THR LEU GLU VAL ASN GLY SEQRES 6 B 198 ARG THR PHE ALA ARG LEU GLY ALA ALA VAL GLY ALA VAL SEQRES 7 B 198 VAL ALA ASP GLY GLN ASP ASP HIS PRO ASN GLU ARG LEU SEQRES 8 B 198 ILE ALA MSE SER HIS ALA TYR LEU ALA PHE ALA ARG GLU SEQRES 9 B 198 HIS PRO LYS LEU TRP ARG ALA LEU PHE ASP VAL GLU MSE SEQRES 10 B 198 ARG SER ASP GLY PRO VAL PRO GLN TRP TYR GLY HIS ALA SEQRES 11 B 198 MSE ALA GLN LEU PHE SER TYR ILE THR THR PRO LEU ALA SEQRES 12 B 198 LYS ILE PHE PRO GLU SER ASP ASP ALA GLU LEU ASP LEU SEQRES 13 B 198 MSE THR ARG THR LEU PHE SER SER VAL HIS GLY ILE VAL SEQRES 14 B 198 LEU LEU GLY LEU GLU ASN ARG ILE SER GLY VAL PRO GLY SEQRES 15 B 198 GLU GLN LEU LYS THR MSE ILE ARG LEU LEU LEU GLU GLN SEQRES 16 B 198 VAL GLY ARG MODRES 3CJD MSE A 93 MET SELENOMETHIONINE MODRES 3CJD MSE A 116 MET SELENOMETHIONINE MODRES 3CJD MSE A 130 MET SELENOMETHIONINE MODRES 3CJD MSE A 156 MET SELENOMETHIONINE MODRES 3CJD MSE A 187 MET SELENOMETHIONINE MODRES 3CJD MSE B 93 MET SELENOMETHIONINE MODRES 3CJD MSE B 116 MET SELENOMETHIONINE MODRES 3CJD MSE B 130 MET SELENOMETHIONINE MODRES 3CJD MSE B 156 MET SELENOMETHIONINE MODRES 3CJD MSE B 187 MET SELENOMETHIONINE HET MSE A 93 8 HET MSE A 116 8 HET MSE A 130 8 HET MSE A 156 8 HET MSE A 187 8 HET MSE B 93 8 HET MSE B 116 8 HET MSE B 130 8 HET MSE B 156 8 HET MSE B 187 8 HET CL A 202 1 HET STE A 201 20 HET STE A 203 20 HET CL B 202 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM STE STEARIC ACID FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 CL 2(CL 1-) FORMUL 4 STE 2(C18 H36 O2) FORMUL 7 HOH *239(H2 O) HELIX 1 1 LYS A 9 GLY A 28 1 20 HELIX 2 2 LEU A 29 LEU A 32 5 4 HELIX 3 3 ARG A 33 ASP A 42 1 10 HELIX 4 4 ALA A 44 PHE A 52 1 9 HELIX 5 5 ASP A 54 GLY A 75 1 22 HELIX 6 6 HIS A 85 HIS A 104 1 20 HELIX 7 7 HIS A 104 VAL A 114 1 11 HELIX 8 8 PRO A 123 PHE A 145 1 23 HELIX 9 9 ASP A 149 GLU A 173 1 25 HELIX 10 10 PRO A 180 GLU A 182 5 3 HELIX 11 11 GLN A 183 GLN A 194 1 12 HELIX 12 12 ALA B 10 GLY B 28 1 19 HELIX 13 13 LEU B 29 LEU B 32 5 4 HELIX 14 14 ARG B 33 ASP B 42 1 10 HELIX 15 15 ALA B 44 PHE B 52 1 9 HELIX 16 16 ASP B 54 ALA B 76 1 23 HELIX 17 17 HIS B 85 HIS B 104 1 20 HELIX 18 18 HIS B 104 VAL B 114 1 11 HELIX 19 19 PRO B 123 PHE B 145 1 23 HELIX 20 20 ASP B 149 GLU B 173 1 25 HELIX 21 21 PRO B 180 GLU B 182 5 3 HELIX 22 22 GLN B 183 GLU B 193 1 11 LINK C ALA A 92 N MSE A 93 1555 1555 1.33 LINK C MSE A 93 N SER A 94 1555 1555 1.33 LINK C GLU A 115 N MSE A 116 1555 1555 1.34 LINK C MSE A 116 N ARG A 117 1555 1555 1.33 LINK C ALA A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N ALA A 131 1555 1555 1.34 LINK C LEU A 155 N MSE A 156 1555 1555 1.34 LINK C MSE A 156 N THR A 157 1555 1555 1.33 LINK C THR A 186 N MSE A 187 1555 1555 1.34 LINK C MSE A 187 N ILE A 188 1555 1555 1.33 LINK C ALA B 92 N MSE B 93 1555 1555 1.33 LINK C MSE B 93 N SER B 94 1555 1555 1.33 LINK C GLU B 115 N MSE B 116 1555 1555 1.34 LINK C MSE B 116 N ARG B 117 1555 1555 1.33 LINK C ALA B 129 N MSE B 130 1555 1555 1.33 LINK C MSE B 130 N ALA B 131 1555 1555 1.33 LINK C LEU B 155 N MSE B 156 1555 1555 1.34 LINK C MSE B 156 N THR B 157 1555 1555 1.33 LINK C THR B 186 N MSE B 187 1555 1555 1.33 LINK C MSE B 187 N ILE B 188 1555 1555 1.33 SITE 1 AC1 4 HIS A 104 PRO A 105 LYS A 106 LEU A 107 SITE 1 AC2 4 HIS B 104 PRO B 105 LYS B 106 LEU B 107 SITE 1 AC3 8 ARG A 175 ILE A 176 SER A 177 SER B 94 SITE 2 AC3 8 LEU B 111 LEU B 133 LEU B 160 PHE B 161 SITE 1 AC4 10 LEU A 70 SER A 94 LEU A 111 PHE A 112 SITE 2 AC4 10 LEU A 133 PHE A 134 LEU A 160 ARG B 175 SITE 3 AC4 10 ILE B 176 SER B 177 CRYST1 40.283 46.044 60.761 99.23 100.39 104.79 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024824 0.006553 0.006122 0.00000 SCALE2 0.000000 0.022462 0.004994 0.00000 SCALE3 0.000000 0.000000 0.017141 0.00000