data_3CJJ # _entry.id 3CJJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3CJJ RCSB RCSB046852 WWPDB D_1000046852 # _pdbx_database_status.entry_id 3CJJ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2008-03-13 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Koch, M.' 1 'Dattilo, B.M.' 2 'Schiefner, A.' 3 'Diez, J.' 4 'Chazin, W.J.' 5 'Fritz, G.' 6 # _citation.id primary _citation.title 'Structural basis for ligand recognition and activation of RAGE.' _citation.journal_abbrev Structure _citation.journal_volume 18 _citation.page_first 1342 _citation.page_last 1352 _citation.year 2010 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20947022 _citation.pdbx_database_id_DOI 10.1016/j.str.2010.05.017 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Koch, M.' 1 primary 'Chitayat, S.' 2 primary 'Dattilo, B.M.' 3 primary 'Schiefner, A.' 4 primary 'Diez, J.' 5 primary 'Chazin, W.J.' 6 primary 'Fritz, G.' 7 # _cell.length_a 74.850 _cell.length_b 119.960 _cell.length_c 28.890 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3CJJ _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.entry_id 3CJJ _symmetry.Int_Tables_number 18 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Advanced glycosylation end product-specific receptor' 24008.531 1 ? ? 'V and C1 domain, ligand-binding domain' ? 2 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? 4 water nat water 18.015 229 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Receptor for advanced glycosylation end products' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQA MNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHP ETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL ; _entity_poly.pdbx_seq_one_letter_code_can ;MAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQA MNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHP ETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 GLN n 1 4 ASN n 1 5 ILE n 1 6 THR n 1 7 ALA n 1 8 ARG n 1 9 ILE n 1 10 GLY n 1 11 GLU n 1 12 PRO n 1 13 LEU n 1 14 VAL n 1 15 LEU n 1 16 LYS n 1 17 CYS n 1 18 LYS n 1 19 GLY n 1 20 ALA n 1 21 PRO n 1 22 LYS n 1 23 LYS n 1 24 PRO n 1 25 PRO n 1 26 GLN n 1 27 ARG n 1 28 LEU n 1 29 GLU n 1 30 TRP n 1 31 LYS n 1 32 LEU n 1 33 ASN n 1 34 THR n 1 35 GLY n 1 36 ARG n 1 37 THR n 1 38 GLU n 1 39 ALA n 1 40 TRP n 1 41 LYS n 1 42 VAL n 1 43 LEU n 1 44 SER n 1 45 PRO n 1 46 GLN n 1 47 GLY n 1 48 GLY n 1 49 GLY n 1 50 PRO n 1 51 TRP n 1 52 ASP n 1 53 SER n 1 54 VAL n 1 55 ALA n 1 56 ARG n 1 57 VAL n 1 58 LEU n 1 59 PRO n 1 60 ASN n 1 61 GLY n 1 62 SER n 1 63 LEU n 1 64 PHE n 1 65 LEU n 1 66 PRO n 1 67 ALA n 1 68 VAL n 1 69 GLY n 1 70 ILE n 1 71 GLN n 1 72 ASP n 1 73 GLU n 1 74 GLY n 1 75 ILE n 1 76 PHE n 1 77 ARG n 1 78 CYS n 1 79 GLN n 1 80 ALA n 1 81 MET n 1 82 ASN n 1 83 ARG n 1 84 ASN n 1 85 GLY n 1 86 LYS n 1 87 GLU n 1 88 THR n 1 89 LYS n 1 90 SER n 1 91 ASN n 1 92 TYR n 1 93 ARG n 1 94 VAL n 1 95 ARG n 1 96 VAL n 1 97 TYR n 1 98 GLN n 1 99 ILE n 1 100 PRO n 1 101 GLY n 1 102 LYS n 1 103 PRO n 1 104 GLU n 1 105 ILE n 1 106 VAL n 1 107 ASP n 1 108 SER n 1 109 ALA n 1 110 SER n 1 111 GLU n 1 112 LEU n 1 113 THR n 1 114 ALA n 1 115 GLY n 1 116 VAL n 1 117 PRO n 1 118 ASN n 1 119 LYS n 1 120 VAL n 1 121 GLY n 1 122 THR n 1 123 CYS n 1 124 VAL n 1 125 SER n 1 126 GLU n 1 127 GLY n 1 128 SER n 1 129 TYR n 1 130 PRO n 1 131 ALA n 1 132 GLY n 1 133 THR n 1 134 LEU n 1 135 SER n 1 136 TRP n 1 137 HIS n 1 138 LEU n 1 139 ASP n 1 140 GLY n 1 141 LYS n 1 142 PRO n 1 143 LEU n 1 144 VAL n 1 145 PRO n 1 146 ASN n 1 147 GLU n 1 148 LYS n 1 149 GLY n 1 150 VAL n 1 151 SER n 1 152 VAL n 1 153 LYS n 1 154 GLU n 1 155 GLN n 1 156 THR n 1 157 ARG n 1 158 ARG n 1 159 HIS n 1 160 PRO n 1 161 GLU n 1 162 THR n 1 163 GLY n 1 164 LEU n 1 165 PHE n 1 166 THR n 1 167 LEU n 1 168 GLN n 1 169 SER n 1 170 GLU n 1 171 LEU n 1 172 MET n 1 173 VAL n 1 174 THR n 1 175 PRO n 1 176 ALA n 1 177 ARG n 1 178 GLY n 1 179 GLY n 1 180 ASP n 1 181 PRO n 1 182 ARG n 1 183 PRO n 1 184 THR n 1 185 PHE n 1 186 SER n 1 187 CYS n 1 188 SER n 1 189 PHE n 1 190 SER n 1 191 PRO n 1 192 GLY n 1 193 LEU n 1 194 PRO n 1 195 ARG n 1 196 HIS n 1 197 ARG n 1 198 ALA n 1 199 LEU n 1 200 ARG n 1 201 THR n 1 202 ALA n 1 203 PRO n 1 204 ILE n 1 205 GLN n 1 206 PRO n 1 207 ARG n 1 208 VAL n 1 209 TRP n 1 210 GLU n 1 211 PRO n 1 212 VAL n 1 213 PRO n 1 214 LEU n 1 215 GLU n 1 216 GLU n 1 217 VAL n 1 218 GLN n 1 219 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'AGER, RAGE' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)Origami B' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET14b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RAGE_HUMAN _struct_ref.pdbx_db_accession Q15109 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAM NRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPE TGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL ; _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3CJJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 219 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q15109 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 240 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 23 _struct_ref_seq.pdbx_auth_seq_align_end 240 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3CJJ _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q15109 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'INITIATING METHIONINE' _struct_ref_seq_dif.pdbx_auth_seq_num 22 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.entry_id 3CJJ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.70 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 54.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '0.1M Na cacodylate, 0.2M Zn acetate, 11% PEG 8000, pH 6.5, vapor diffusion, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2006-08-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator 'Al FILTER' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.008 1.0 2 1.28 1.0 3 1.283 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_wavelength_list '1.008, 1.28, 1.283' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA # _reflns.entry_id 3CJJ _reflns.d_resolution_high 1.850 _reflns.number_obs 23066 _reflns.pdbx_Rmerge_I_obs 0.090 _reflns.pdbx_netI_over_sigmaI 11.380 _reflns.percent_possible_obs 99.800 _reflns.B_iso_Wilson_estimate 33.657 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 35.180 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.85 2.00 33541 ? 4712 0.589 3.2 ? ? ? ? ? 100.00 1 1 2.00 2.20 31919 ? 4484 0.299 6.0 ? ? ? ? ? 100.00 2 1 2.20 2.70 44072 ? 6240 0.157 10.5 ? ? ? ? ? 100.00 3 1 2.70 3.00 13966 ? 2023 0.093 16.7 ? ? ? ? ? 100.00 4 1 3.00 4.00 21435 ? 3187 0.072 21.0 ? ? ? ? ? 100.00 5 1 4.00 5.00 7766 ? 1163 0.056 23.1 ? ? ? ? ? 100.00 6 1 5.00 6.00 3438 ? 524 0.048 22.8 ? ? ? ? ? 100.00 7 1 6.00 10.00 3719 ? 590 0.046 22.4 ? ? ? ? ? 99.20 8 1 10.00 35.180 710 ? 143 0.041 19.9 ? ? ? ? ? 77.30 9 1 # _refine.entry_id 3CJJ _refine.ls_d_res_high 1.850 _refine.ls_d_res_low 35 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 100.000 _refine.ls_number_reflns_obs 23063 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.210 _refine.ls_R_factor_R_work 0.209 _refine.ls_R_factor_R_free 0.240 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1154 _refine.B_iso_mean 28.200 _refine.aniso_B[1][1] -1.020 _refine.aniso_B[2][2] -1.050 _refine.aniso_B[3][3] 2.070 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.937 _refine.pdbx_overall_ESU_R 0.145 _refine.pdbx_overall_ESU_R_Free 0.134 _refine.overall_SU_ML 0.114 _refine.overall_SU_B 7.375 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1687 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 229 _refine_hist.number_atoms_total 1924 _refine_hist.d_res_high 1.850 _refine_hist.d_res_low 35 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1752 0.018 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2389 1.988 1.982 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 224 8.127 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 71 42.082 23.239 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 293 18.168 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16 24.105 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 259 0.118 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1347 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 770 0.239 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1133 0.312 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 180 0.212 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 9 0.202 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 88 0.225 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 26 0.204 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1139 1.146 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1804 1.876 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 694 2.695 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 582 4.466 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.850 _refine_ls_shell.d_res_low 1.898 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 1595 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.275 _refine_ls_shell.R_factor_R_free 0.301 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 84 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1679 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3CJJ _struct.title 'Crystal structure of human rage ligand-binding domain' _struct.pdbx_descriptor 'Advanced glycosylation end product-specific receptor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3CJJ _struct_keywords.text 'MEMBRANE PROTEIN, SIGNALING PROTEIN, immunoglobulin domain, Glycoprotein, Membrane, Secreted, Transmembrane' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id GLY _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 69 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ASP _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 72 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLY _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 90 _struct_conf.end_auth_comp_id ASP _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 93 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 17 SG ? ? ? 1_555 A CYS 78 SG ? ? A CYS 38 A CYS 99 1_555 ? ? ? ? ? ? ? 2.072 ? disulf2 disulf ? ? A CYS 123 SG ? ? ? 1_555 A CYS 187 SG ? ? A CYS 144 A CYS 208 1_555 ? ? ? ? ? ? ? 2.047 ? metalc1 metalc ? ? A GLU 38 OE1 ? ? ? 1_555 E ZN . ZN A ? A GLU 59 A ZN 4 1_555 ? ? ? ? ? ? ? 1.996 ? metalc2 metalc ? ? A HIS 137 NE2 ? ? ? 1_555 C ZN . ZN ? ? A HIS 158 A ZN 2 1_555 ? ? ? ? ? ? ? 2.005 ? metalc3 metalc ? ? A HIS 196 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 217 A ZN 3 1_555 ? ? ? ? ? ? ? 1.897 ? metalc4 metalc ? ? B ACT . O ? ? ? 1_555 C ZN . ZN ? ? A ACT 1 A ZN 2 1_555 ? ? ? ? ? ? ? 1.791 ? metalc5 metalc ? ? D ZN . ZN ? ? ? 1_555 G HOH . O ? ? A ZN 3 A HOH 394 1_555 ? ? ? ? ? ? ? 2.157 ? metalc6 metalc ? ? D ZN . ZN ? ? ? 1_555 G HOH . O ? ? A ZN 3 A HOH 454 1_555 ? ? ? ? ? ? ? 1.984 ? metalc7 metalc ? ? F ZN . ZN ? ? ? 1_555 G HOH . O ? ? A ZN 5 A HOH 470 1_555 ? ? ? ? ? ? ? 1.785 ? metalc8 metalc ? ? F ZN . ZN ? ? ? 1_555 G HOH . O ? ? A ZN 5 A HOH 444 1_555 ? ? ? ? ? ? ? 1.736 ? metalc9 metalc ? ? A ASP 107 OD1 ? ? ? 1_555 F ZN . ZN ? ? A ASP 128 A ZN 5 1_555 ? ? ? ? ? ? ? 2.554 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PRO 24 A . ? PRO 45 A PRO 25 A ? PRO 46 A 1 -4.49 2 GLN 46 A . ? GLN 67 A GLY 47 A ? GLY 68 A 1 -4.83 3 GLN 46 A . ? GLN 67 A GLY 47 A ? GLY 68 A 1 -5.48 4 GLY 47 A . ? GLY 68 A GLY 48 A ? GLY 69 A 1 -2.81 5 GLY 48 A . ? GLY 69 A GLY 49 A ? GLY 70 A 1 7.24 6 GLY 49 A . ? GLY 70 A PRO 50 A ? PRO 71 A 1 -4.97 7 PRO 50 A . ? PRO 71 A TRP 51 A ? TRP 72 A 1 21.59 8 TRP 51 A . ? TRP 72 A ASP 52 A ? ASP 73 A 1 18.51 9 SER 53 A . ? SER 74 A VAL 54 A ? VAL 75 A 1 19.64 10 ARG 83 A . ? ARG 104 A ASN 84 A ? ASN 105 A 1 -8.94 11 ASN 84 A . ? ASN 105 A GLY 85 A ? GLY 106 A 1 -11.47 12 TYR 129 A . ? TYR 150 A PRO 130 A ? PRO 151 A 1 -4.63 13 GLY 178 A . ? GLY 199 A GLY 179 A ? GLY 200 A 1 20.71 14 LEU 193 A . ? LEU 214 A PRO 194 A ? PRO 215 A 1 0.27 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 4 ? D ? 2 ? E ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 3 ? ARG A 8 ? GLN A 24 ARG A 29 A 2 GLU A 87 ? TYR A 97 ? GLU A 108 TYR A 118 A 3 GLY A 74 ? MET A 81 ? GLY A 95 MET A 102 A 4 LEU A 28 ? THR A 34 ? LEU A 49 THR A 55 A 5 LYS A 41 ? LEU A 43 ? LYS A 62 LEU A 64 B 1 LEU A 13 ? LEU A 15 ? LEU A 34 LEU A 36 B 2 LEU A 63 ? LEU A 65 ? LEU A 84 LEU A 86 B 3 ARG A 56 ? VAL A 57 ? ARG A 77 VAL A 78 C 1 GLU A 104 ? VAL A 106 ? GLU A 125 VAL A 127 C 2 ASN A 118 ? SER A 128 ? ASN A 139 SER A 149 C 3 PHE A 165 ? VAL A 173 ? PHE A 186 VAL A 194 C 4 VAL A 150 ? ARG A 158 ? VAL A 171 ARG A 179 D 1 GLU A 111 ? THR A 113 ? GLU A 132 THR A 134 D 2 ARG A 207 ? TRP A 209 ? ARG A 228 TRP A 230 E 1 LYS A 141 ? PRO A 142 ? LYS A 162 PRO A 163 E 2 THR A 133 ? LEU A 138 ? THR A 154 LEU A 159 E 3 PHE A 185 ? SER A 190 ? PHE A 206 SER A 211 E 4 LEU A 199 ? ARG A 200 ? LEU A 220 ARG A 221 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 5 ? N ILE A 26 O ARG A 93 ? O ARG A 114 A 2 3 O TYR A 92 ? O TYR A 113 N PHE A 76 ? N PHE A 97 A 3 4 O ARG A 77 ? O ARG A 98 N LYS A 31 ? N LYS A 52 A 4 5 N TRP A 30 ? N TRP A 51 O LEU A 43 ? O LEU A 64 B 1 2 N LEU A 15 ? N LEU A 36 O LEU A 63 ? O LEU A 84 B 2 3 O PHE A 64 ? O PHE A 85 N ARG A 56 ? N ARG A 77 C 1 2 N VAL A 106 ? N VAL A 127 O THR A 122 ? O THR A 143 C 2 3 N CYS A 123 ? N CYS A 144 O SER A 169 ? O SER A 190 C 3 4 O GLU A 170 ? O GLU A 191 N LYS A 153 ? N LYS A 174 D 1 2 N LEU A 112 ? N LEU A 133 O TRP A 209 ? O TRP A 230 E 1 2 O LYS A 141 ? O LYS A 162 N LEU A 138 ? N LEU A 159 E 2 3 N HIS A 137 ? N HIS A 158 O SER A 186 ? O SER A 207 E 3 4 N PHE A 189 ? N PHE A 210 O LEU A 199 ? O LEU A 220 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 ? ? ? ? ? 8 'BINDING SITE FOR RESIDUE ACT A 1' AC2 ? ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 241' AC3 ? ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 2' AC4 ? ? ? ? ? 7 'BINDING SITE FOR RESIDUE ZN A 3' AC5 ? ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 4' AC6 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE ACT A 1' AC7 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE ZN A 2' AC8 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 3' AC9 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE ZN A 4' AD1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 5' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 SER A 135 ? SER A 156 . ? 1_555 ? 2 AC1 8 TRP A 136 ? TRP A 157 . ? 1_555 ? 3 AC1 8 HIS A 137 ? HIS A 158 . ? 1_555 ? 4 AC1 8 PRO A 142 ? PRO A 163 . ? 1_555 ? 5 AC1 8 HIS A 159 ? HIS A 180 . ? 1_555 ? 6 AC1 8 PRO A 160 ? PRO A 181 . ? 1_555 ? 7 AC1 8 GLU A 161 ? GLU A 182 . ? 1_555 ? 8 AC1 8 HOH G . ? HOH A 289 . ? 1_555 ? 9 AC2 4 HIS A 137 ? HIS A 158 . ? 1_555 ? 10 AC2 4 HIS A 159 ? HIS A 180 . ? 1_555 ? 11 AC2 4 GLU A 161 ? GLU A 182 . ? 1_555 ? 12 AC2 4 HOH G . ? HOH A 434 . ? 1_555 ? 13 AC3 4 HIS A 196 ? HIS A 217 . ? 1_555 ? 14 AC3 4 HOH G . ? HOH A 394 . ? 1_555 ? 15 AC3 4 HOH G . ? HOH A 397 . ? 1_555 ? 16 AC3 4 HOH G . ? HOH A 454 . ? 1_555 ? 17 AC4 7 GLU A 38 ? GLU A 59 . ? 1_555 ? 18 AC4 7 ASP A 139 ? ASP A 160 . ? 1_555 ? 19 AC4 7 ASP A 180 ? ASP A 201 . ? 1_555 ? 20 AC4 7 HOH G . ? HOH A 444 . ? 1_555 ? 21 AC4 7 HOH G . ? HOH A 446 . ? 1_555 ? 22 AC4 7 HOH G . ? HOH A 461 . ? 1_555 ? 23 AC4 7 HOH G . ? HOH A 469 . ? 1_555 ? 24 AC5 4 ASP A 107 ? ASP A 128 . ? 1_555 ? 25 AC5 4 HOH G . ? HOH A 444 . ? 1_555 ? 26 AC5 4 HOH G . ? HOH A 446 . ? 1_555 ? 27 AC5 4 HOH G . ? HOH A 470 . ? 1_555 ? 28 AC6 9 ZN C . ? ZN A 2 . ? 1_555 ? 29 AC6 9 SER A 135 ? SER A 156 . ? 1_555 ? 30 AC6 9 TRP A 136 ? TRP A 157 . ? 1_555 ? 31 AC6 9 HIS A 137 ? HIS A 158 . ? 1_555 ? 32 AC6 9 PRO A 142 ? PRO A 163 . ? 1_555 ? 33 AC6 9 HIS A 159 ? HIS A 180 . ? 1_554 ? 34 AC6 9 PRO A 160 ? PRO A 181 . ? 1_554 ? 35 AC6 9 GLU A 161 ? GLU A 182 . ? 1_554 ? 36 AC6 9 HOH G . ? HOH A 289 . ? 1_555 ? 37 AC7 5 ACT B . ? ACT A 1 . ? 1_555 ? 38 AC7 5 HIS A 137 ? HIS A 158 . ? 1_555 ? 39 AC7 5 HIS A 159 ? HIS A 180 . ? 1_554 ? 40 AC7 5 GLU A 161 ? GLU A 182 . ? 1_554 ? 41 AC7 5 HOH G . ? HOH A 434 . ? 1_554 ? 42 AC8 4 HIS A 196 ? HIS A 217 . ? 1_555 ? 43 AC8 4 HOH G . ? HOH A 394 . ? 1_555 ? 44 AC8 4 HOH G . ? HOH A 397 . ? 1_555 ? 45 AC8 4 HOH G . ? HOH A 454 . ? 1_555 ? 46 AC9 7 GLU A 38 ? GLU A 59 . ? 1_555 ? 47 AC9 7 ASP A 139 ? ASP A 160 . ? 4_555 ? 48 AC9 7 ASP A 180 ? ASP A 201 . ? 4_555 ? 49 AC9 7 HOH G . ? HOH A 444 . ? 4_556 ? 50 AC9 7 HOH G . ? HOH A 446 . ? 4_555 ? 51 AC9 7 HOH G . ? HOH A 461 . ? 4_555 ? 52 AC9 7 HOH G . ? HOH A 469 . ? 4_555 ? 53 AD1 4 ASP A 107 ? ASP A 128 . ? 1_555 ? 54 AD1 4 HOH G . ? HOH A 444 . ? 1_555 ? 55 AD1 4 HOH G . ? HOH A 446 . ? 1_556 ? 56 AD1 4 HOH G . ? HOH A 470 . ? 1_555 ? # _atom_sites.entry_id 3CJJ _atom_sites.fract_transf_matrix[1][1] 0.013360 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008336 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.034614 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 22 22 MET MET A . n A 1 2 ALA 2 23 23 ALA ALA A . n A 1 3 GLN 3 24 24 GLN GLN A . n A 1 4 ASN 4 25 25 ASN ASN A . n A 1 5 ILE 5 26 26 ILE ILE A . n A 1 6 THR 6 27 27 THR THR A . n A 1 7 ALA 7 28 28 ALA ALA A . n A 1 8 ARG 8 29 29 ARG ARG A . n A 1 9 ILE 9 30 30 ILE ILE A . n A 1 10 GLY 10 31 31 GLY GLY A . n A 1 11 GLU 11 32 32 GLU GLU A . n A 1 12 PRO 12 33 33 PRO PRO A . n A 1 13 LEU 13 34 34 LEU LEU A . n A 1 14 VAL 14 35 35 VAL VAL A . n A 1 15 LEU 15 36 36 LEU LEU A . n A 1 16 LYS 16 37 37 LYS LYS A . n A 1 17 CYS 17 38 38 CYS CYS A . n A 1 18 LYS 18 39 39 LYS LYS A . n A 1 19 GLY 19 40 40 GLY GLY A . n A 1 20 ALA 20 41 41 ALA ALA A . n A 1 21 PRO 21 42 42 PRO PRO A . n A 1 22 LYS 22 43 43 LYS LYS A . n A 1 23 LYS 23 44 44 LYS LYS A . n A 1 24 PRO 24 45 45 PRO PRO A . n A 1 25 PRO 25 46 46 PRO PRO A . n A 1 26 GLN 26 47 47 GLN GLN A . n A 1 27 ARG 27 48 48 ARG ARG A . n A 1 28 LEU 28 49 49 LEU LEU A . n A 1 29 GLU 29 50 50 GLU GLU A . n A 1 30 TRP 30 51 51 TRP TRP A . n A 1 31 LYS 31 52 52 LYS LYS A . n A 1 32 LEU 32 53 53 LEU LEU A . n A 1 33 ASN 33 54 54 ASN ASN A . n A 1 34 THR 34 55 55 THR THR A . n A 1 35 GLY 35 56 56 GLY GLY A . n A 1 36 ARG 36 57 57 ARG ARG A . n A 1 37 THR 37 58 58 THR THR A . n A 1 38 GLU 38 59 59 GLU GLU A . n A 1 39 ALA 39 60 60 ALA ALA A . n A 1 40 TRP 40 61 61 TRP TRP A . n A 1 41 LYS 41 62 62 LYS LYS A . n A 1 42 VAL 42 63 63 VAL VAL A . n A 1 43 LEU 43 64 64 LEU LEU A . n A 1 44 SER 44 65 65 SER SER A . n A 1 45 PRO 45 66 66 PRO PRO A . n A 1 46 GLN 46 67 67 GLN GLN A . n A 1 47 GLY 47 68 68 GLY GLY A . n A 1 48 GLY 48 69 69 GLY GLY A . n A 1 49 GLY 49 70 70 GLY GLY A . n A 1 50 PRO 50 71 71 PRO PRO A . n A 1 51 TRP 51 72 72 TRP TRP A . n A 1 52 ASP 52 73 73 ASP ASP A . n A 1 53 SER 53 74 74 SER SER A . n A 1 54 VAL 54 75 75 VAL VAL A . n A 1 55 ALA 55 76 76 ALA ALA A . n A 1 56 ARG 56 77 77 ARG ARG A . n A 1 57 VAL 57 78 78 VAL VAL A . n A 1 58 LEU 58 79 79 LEU LEU A . n A 1 59 PRO 59 80 80 PRO PRO A . n A 1 60 ASN 60 81 81 ASN ASN A . n A 1 61 GLY 61 82 82 GLY GLY A . n A 1 62 SER 62 83 83 SER SER A . n A 1 63 LEU 63 84 84 LEU LEU A . n A 1 64 PHE 64 85 85 PHE PHE A . n A 1 65 LEU 65 86 86 LEU LEU A . n A 1 66 PRO 66 87 87 PRO PRO A . n A 1 67 ALA 67 88 88 ALA ALA A . n A 1 68 VAL 68 89 89 VAL VAL A . n A 1 69 GLY 69 90 90 GLY GLY A . n A 1 70 ILE 70 91 91 ILE ILE A . n A 1 71 GLN 71 92 92 GLN GLN A . n A 1 72 ASP 72 93 93 ASP ASP A . n A 1 73 GLU 73 94 94 GLU GLU A . n A 1 74 GLY 74 95 95 GLY GLY A . n A 1 75 ILE 75 96 96 ILE ILE A . n A 1 76 PHE 76 97 97 PHE PHE A . n A 1 77 ARG 77 98 98 ARG ARG A . n A 1 78 CYS 78 99 99 CYS CYS A . n A 1 79 GLN 79 100 100 GLN GLN A . n A 1 80 ALA 80 101 101 ALA ALA A . n A 1 81 MET 81 102 102 MET MET A . n A 1 82 ASN 82 103 103 ASN ASN A . n A 1 83 ARG 83 104 104 ARG ARG A . n A 1 84 ASN 84 105 105 ASN ASN A . n A 1 85 GLY 85 106 106 GLY GLY A . n A 1 86 LYS 86 107 107 LYS LYS A . n A 1 87 GLU 87 108 108 GLU GLU A . n A 1 88 THR 88 109 109 THR THR A . n A 1 89 LYS 89 110 110 LYS LYS A . n A 1 90 SER 90 111 111 SER SER A . n A 1 91 ASN 91 112 112 ASN ASN A . n A 1 92 TYR 92 113 113 TYR TYR A . n A 1 93 ARG 93 114 114 ARG ARG A . n A 1 94 VAL 94 115 115 VAL VAL A . n A 1 95 ARG 95 116 116 ARG ARG A . n A 1 96 VAL 96 117 117 VAL VAL A . n A 1 97 TYR 97 118 118 TYR TYR A . n A 1 98 GLN 98 119 119 GLN GLN A . n A 1 99 ILE 99 120 120 ILE ILE A . n A 1 100 PRO 100 121 121 PRO PRO A . n A 1 101 GLY 101 122 122 GLY GLY A . n A 1 102 LYS 102 123 123 LYS LYS A . n A 1 103 PRO 103 124 124 PRO PRO A . n A 1 104 GLU 104 125 125 GLU GLU A . n A 1 105 ILE 105 126 126 ILE ILE A . n A 1 106 VAL 106 127 127 VAL VAL A . n A 1 107 ASP 107 128 128 ASP ASP A . n A 1 108 SER 108 129 129 SER SER A . n A 1 109 ALA 109 130 130 ALA ALA A . n A 1 110 SER 110 131 131 SER SER A . n A 1 111 GLU 111 132 132 GLU GLU A . n A 1 112 LEU 112 133 133 LEU LEU A . n A 1 113 THR 113 134 134 THR THR A . n A 1 114 ALA 114 135 135 ALA ALA A . n A 1 115 GLY 115 136 136 GLY GLY A . n A 1 116 VAL 116 137 137 VAL VAL A . n A 1 117 PRO 117 138 138 PRO PRO A . n A 1 118 ASN 118 139 139 ASN ASN A . n A 1 119 LYS 119 140 140 LYS LYS A . n A 1 120 VAL 120 141 141 VAL VAL A . n A 1 121 GLY 121 142 142 GLY GLY A . n A 1 122 THR 122 143 143 THR THR A . n A 1 123 CYS 123 144 144 CYS CYS A . n A 1 124 VAL 124 145 145 VAL VAL A . n A 1 125 SER 125 146 146 SER SER A . n A 1 126 GLU 126 147 147 GLU GLU A . n A 1 127 GLY 127 148 148 GLY GLY A . n A 1 128 SER 128 149 149 SER SER A . n A 1 129 TYR 129 150 150 TYR TYR A . n A 1 130 PRO 130 151 151 PRO PRO A . n A 1 131 ALA 131 152 152 ALA ALA A . n A 1 132 GLY 132 153 153 GLY GLY A . n A 1 133 THR 133 154 154 THR THR A . n A 1 134 LEU 134 155 155 LEU LEU A . n A 1 135 SER 135 156 156 SER SER A . n A 1 136 TRP 136 157 157 TRP TRP A . n A 1 137 HIS 137 158 158 HIS HIS A . n A 1 138 LEU 138 159 159 LEU LEU A . n A 1 139 ASP 139 160 160 ASP ASP A . n A 1 140 GLY 140 161 161 GLY GLY A . n A 1 141 LYS 141 162 162 LYS LYS A . n A 1 142 PRO 142 163 163 PRO PRO A . n A 1 143 LEU 143 164 164 LEU LEU A . n A 1 144 VAL 144 165 165 VAL VAL A . n A 1 145 PRO 145 166 166 PRO PRO A . n A 1 146 ASN 146 167 167 ASN ASN A . n A 1 147 GLU 147 168 168 GLU GLU A . n A 1 148 LYS 148 169 169 LYS LYS A . n A 1 149 GLY 149 170 170 GLY GLY A . n A 1 150 VAL 150 171 171 VAL VAL A . n A 1 151 SER 151 172 172 SER SER A . n A 1 152 VAL 152 173 173 VAL VAL A . n A 1 153 LYS 153 174 174 LYS LYS A . n A 1 154 GLU 154 175 175 GLU GLU A . n A 1 155 GLN 155 176 176 GLN GLN A . n A 1 156 THR 156 177 177 THR THR A . n A 1 157 ARG 157 178 178 ARG ARG A . n A 1 158 ARG 158 179 179 ARG ARG A . n A 1 159 HIS 159 180 180 HIS HIS A . n A 1 160 PRO 160 181 181 PRO PRO A . n A 1 161 GLU 161 182 182 GLU GLU A . n A 1 162 THR 162 183 183 THR THR A . n A 1 163 GLY 163 184 184 GLY GLY A . n A 1 164 LEU 164 185 185 LEU LEU A . n A 1 165 PHE 165 186 186 PHE PHE A . n A 1 166 THR 166 187 187 THR THR A . n A 1 167 LEU 167 188 188 LEU LEU A . n A 1 168 GLN 168 189 189 GLN GLN A . n A 1 169 SER 169 190 190 SER SER A . n A 1 170 GLU 170 191 191 GLU GLU A . n A 1 171 LEU 171 192 192 LEU LEU A . n A 1 172 MET 172 193 193 MET MET A . n A 1 173 VAL 173 194 194 VAL VAL A . n A 1 174 THR 174 195 195 THR THR A . n A 1 175 PRO 175 196 196 PRO PRO A . n A 1 176 ALA 176 197 197 ALA ALA A . n A 1 177 ARG 177 198 198 ARG ARG A . n A 1 178 GLY 178 199 199 GLY GLY A . n A 1 179 GLY 179 200 200 GLY GLY A . n A 1 180 ASP 180 201 201 ASP ASP A . n A 1 181 PRO 181 202 202 PRO PRO A . n A 1 182 ARG 182 203 203 ARG ARG A . n A 1 183 PRO 183 204 204 PRO PRO A . n A 1 184 THR 184 205 205 THR THR A . n A 1 185 PHE 185 206 206 PHE PHE A . n A 1 186 SER 186 207 207 SER SER A . n A 1 187 CYS 187 208 208 CYS CYS A . n A 1 188 SER 188 209 209 SER SER A . n A 1 189 PHE 189 210 210 PHE PHE A . n A 1 190 SER 190 211 211 SER SER A . n A 1 191 PRO 191 212 212 PRO PRO A . n A 1 192 GLY 192 213 213 GLY GLY A . n A 1 193 LEU 193 214 214 LEU LEU A . n A 1 194 PRO 194 215 215 PRO PRO A . n A 1 195 ARG 195 216 216 ARG ARG A . n A 1 196 HIS 196 217 217 HIS HIS A . n A 1 197 ARG 197 218 218 ARG ARG A . n A 1 198 ALA 198 219 219 ALA ALA A . n A 1 199 LEU 199 220 220 LEU LEU A . n A 1 200 ARG 200 221 221 ARG ARG A . n A 1 201 THR 201 222 222 THR THR A . n A 1 202 ALA 202 223 223 ALA ALA A . n A 1 203 PRO 203 224 224 PRO PRO A . n A 1 204 ILE 204 225 225 ILE ILE A . n A 1 205 GLN 205 226 226 GLN GLN A . n A 1 206 PRO 206 227 227 PRO PRO A . n A 1 207 ARG 207 228 228 ARG ARG A . n A 1 208 VAL 208 229 229 VAL VAL A . n A 1 209 TRP 209 230 230 TRP TRP A . n A 1 210 GLU 210 231 231 GLU GLU A . n A 1 211 PRO 211 232 232 PRO PRO A . n A 1 212 VAL 212 233 233 VAL VAL A . n A 1 213 PRO 213 234 234 PRO PRO A . n A 1 214 LEU 214 235 235 LEU LEU A . n A 1 215 GLU 215 236 236 GLU GLU A . n A 1 216 GLU 216 237 237 GLU GLU A . n A 1 217 VAL 217 238 238 VAL VAL A . n A 1 218 GLN 218 239 239 GLN GLN A . n A 1 219 LEU 219 240 240 LEU LEU A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 137 ? A HIS 158 ? 1_555 ZN ? C ZN . ? A ZN 2 ? 1_555 O ? B ACT . ? A ACT 1 ? 1_555 97.9 ? 2 NE2 ? A HIS 196 ? A HIS 217 ? 1_555 ZN ? D ZN . ? A ZN 3 ? 1_555 O ? G HOH . ? A HOH 394 ? 1_555 100.3 ? 3 NE2 ? A HIS 196 ? A HIS 217 ? 1_555 ZN ? D ZN . ? A ZN 3 ? 1_555 O ? G HOH . ? A HOH 454 ? 1_555 101.9 ? 4 O ? G HOH . ? A HOH 394 ? 1_555 ZN ? D ZN . ? A ZN 3 ? 1_555 O ? G HOH . ? A HOH 454 ? 1_555 110.5 ? 5 O ? G HOH . ? A HOH 470 ? 1_555 ZN ? F ZN . ? A ZN 5 ? 1_555 O ? G HOH . ? A HOH 444 ? 1_555 143.4 ? 6 O ? G HOH . ? A HOH 470 ? 1_555 ZN ? F ZN . ? A ZN 5 ? 1_555 OD1 ? A ASP 107 ? A ASP 128 ? 1_555 80.6 ? 7 O ? G HOH . ? A HOH 444 ? 1_555 ZN ? F ZN . ? A ZN 5 ? 1_555 OD1 ? A ASP 107 ? A ASP 128 ? 1_555 102.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-03-24 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-12-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.000 _diffrn_reflns.pdbx_d_res_low ? _diffrn_reflns.pdbx_number_obs 33893 _diffrn_reflns.pdbx_Rmerge_I_obs 0.073 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI 10.50 _diffrn_reflns.pdbx_redundancy ? _diffrn_reflns.pdbx_percent_possible_obs 99.70 _diffrn_reflns.number 127070 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 10.00 35.180 209 ? 0.032 ? ? ? 78.00 1 6.00 10.00 985 ? 0.040 ? ? ? 99.20 1 5.00 6.00 912 ? 0.045 ? ? ? 100.00 1 4.00 5.00 2066 ? 0.052 ? ? ? 99.90 1 3.00 4.00 5820 ? 0.065 ? ? ? 99.80 1 2.70 3.00 3742 ? 0.084 ? ? ? 99.90 1 2.20 2.70 11688 ? 0.145 ? ? ? 100.00 1 2.00 2.20 8471 ? 0.276 ? ? ? 100.00 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 48.0470 2.8250 12.2390 0.1136 0.0671 0.0448 -0.0058 -0.0174 0.0276 2.9504 4.0614 0.9267 -0.2360 0.2978 -1.1947 0.1025 -0.1556 0.0531 -0.1309 -0.4383 -0.3221 -0.0310 0.0446 0.0187 'X-RAY DIFFRACTION' 2 ? refined 34.6950 38.9630 -5.6250 0.0978 0.0575 -0.0030 0.0317 -0.0132 0.0517 2.3318 2.9834 2.5100 -1.9635 1.8111 -2.3890 -0.0343 -0.1555 0.1898 0.1695 0.3365 -0.1816 0.1198 -0.1391 0.1083 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A A 123 ? 22 A 1 A 102 'X-RAY DIFFRACTION' ? 2 2 A A 240 ? 124 A 103 A 219 'X-RAY DIFFRACTION' ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 1 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 2 RESOLVE . ? package 'Terwilliger, T. C' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 SHELXD . ? ? ? ? phasing ? ? ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 ZN A ZN 3 ? ? O A HOH 397 ? ? 1.64 2 1 O A HOH 316 ? ? O A HOH 334 ? ? 2.06 3 1 OD1 A ASN 25 ? ? NH2 A ARG 116 ? ? 2.19 4 1 O A LYS 174 ? ? O A HOH 316 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A GLN 239 ? ? CD A GLN 239 ? ? 1.680 1.506 0.174 0.023 N 2 1 CD A GLN 239 ? ? OE1 A GLN 239 ? ? 1.368 1.235 0.133 0.022 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLY _pdbx_validate_rmsd_angle.auth_seq_id_1 70 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 71 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 71 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 141.52 _pdbx_validate_rmsd_angle.angle_target_value 127.00 _pdbx_validate_rmsd_angle.angle_deviation 14.52 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.40 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 67 ? ? 160.69 -61.12 2 1 GLN A 67 ? ? 159.80 -59.16 3 1 PRO A 71 ? ? -52.37 -143.93 4 1 SER A 74 ? ? 145.67 147.81 5 1 VAL A 75 ? ? -115.46 -133.93 6 1 ALA A 88 ? ? -160.13 109.67 7 1 ARG A 104 ? ? -110.93 64.16 8 1 PRO A 151 ? ? -69.21 -168.30 9 1 PRO A 166 ? ? -62.01 0.96 10 1 ARG A 216 ? ? -66.89 90.79 11 1 ARG A 218 ? ? -34.61 138.34 12 1 LEU A 235 ? ? -151.75 61.01 13 1 GLU A 236 ? ? -144.89 52.59 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 'ZINC ION' ZN 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT 1 1 1 ACT ACT A . C 3 ZN 1 2 1 ZN ZN A . D 3 ZN 1 3 2 ZN ZN A . E 3 ZN 1 4 3 ZN ZN A . F 3 ZN 1 5 4 ZN ZN A . G 4 HOH 1 242 1 HOH HOH A . G 4 HOH 2 243 2 HOH HOH A . G 4 HOH 3 244 3 HOH HOH A . G 4 HOH 4 245 4 HOH HOH A . G 4 HOH 5 246 5 HOH HOH A . G 4 HOH 6 247 6 HOH HOH A . G 4 HOH 7 248 7 HOH HOH A . G 4 HOH 8 249 8 HOH HOH A . G 4 HOH 9 250 9 HOH HOH A . G 4 HOH 10 251 10 HOH HOH A . G 4 HOH 11 252 11 HOH HOH A . G 4 HOH 12 253 12 HOH HOH A . G 4 HOH 13 254 13 HOH HOH A . G 4 HOH 14 255 14 HOH HOH A . G 4 HOH 15 256 15 HOH HOH A . G 4 HOH 16 257 16 HOH HOH A . G 4 HOH 17 258 17 HOH HOH A . G 4 HOH 18 259 18 HOH HOH A . G 4 HOH 19 260 19 HOH HOH A . G 4 HOH 20 261 20 HOH HOH A . G 4 HOH 21 262 21 HOH HOH A . G 4 HOH 22 263 23 HOH HOH A . G 4 HOH 23 264 24 HOH HOH A . G 4 HOH 24 265 25 HOH HOH A . G 4 HOH 25 266 26 HOH HOH A . G 4 HOH 26 267 27 HOH HOH A . G 4 HOH 27 268 28 HOH HOH A . G 4 HOH 28 269 29 HOH HOH A . G 4 HOH 29 270 30 HOH HOH A . G 4 HOH 30 271 31 HOH HOH A . G 4 HOH 31 272 32 HOH HOH A . G 4 HOH 32 273 33 HOH HOH A . G 4 HOH 33 274 34 HOH HOH A . G 4 HOH 34 275 35 HOH HOH A . G 4 HOH 35 276 36 HOH HOH A . G 4 HOH 36 277 37 HOH HOH A . G 4 HOH 37 278 38 HOH HOH A . G 4 HOH 38 279 39 HOH HOH A . G 4 HOH 39 280 40 HOH HOH A . G 4 HOH 40 281 41 HOH HOH A . G 4 HOH 41 282 42 HOH HOH A . G 4 HOH 42 283 43 HOH HOH A . G 4 HOH 43 284 44 HOH HOH A . G 4 HOH 44 285 45 HOH HOH A . G 4 HOH 45 286 46 HOH HOH A . G 4 HOH 46 287 47 HOH HOH A . G 4 HOH 47 288 48 HOH HOH A . G 4 HOH 48 289 49 HOH HOH A . G 4 HOH 49 290 50 HOH HOH A . G 4 HOH 50 291 51 HOH HOH A . G 4 HOH 51 292 52 HOH HOH A . G 4 HOH 52 293 53 HOH HOH A . G 4 HOH 53 294 54 HOH HOH A . G 4 HOH 54 295 55 HOH HOH A . G 4 HOH 55 296 56 HOH HOH A . G 4 HOH 56 297 57 HOH HOH A . G 4 HOH 57 298 58 HOH HOH A . G 4 HOH 58 299 59 HOH HOH A . G 4 HOH 59 300 60 HOH HOH A . G 4 HOH 60 301 61 HOH HOH A . G 4 HOH 61 302 62 HOH HOH A . G 4 HOH 62 303 63 HOH HOH A . G 4 HOH 63 304 64 HOH HOH A . G 4 HOH 64 305 65 HOH HOH A . G 4 HOH 65 306 67 HOH HOH A . G 4 HOH 66 307 68 HOH HOH A . G 4 HOH 67 308 69 HOH HOH A . G 4 HOH 68 309 70 HOH HOH A . G 4 HOH 69 310 71 HOH HOH A . G 4 HOH 70 311 72 HOH HOH A . G 4 HOH 71 312 73 HOH HOH A . G 4 HOH 72 313 74 HOH HOH A . G 4 HOH 73 314 76 HOH HOH A . G 4 HOH 74 315 77 HOH HOH A . G 4 HOH 75 316 78 HOH HOH A . G 4 HOH 76 317 79 HOH HOH A . G 4 HOH 77 318 80 HOH HOH A . G 4 HOH 78 319 81 HOH HOH A . G 4 HOH 79 320 83 HOH HOH A . G 4 HOH 80 321 84 HOH HOH A . G 4 HOH 81 322 85 HOH HOH A . G 4 HOH 82 323 86 HOH HOH A . G 4 HOH 83 324 87 HOH HOH A . G 4 HOH 84 325 88 HOH HOH A . G 4 HOH 85 326 89 HOH HOH A . G 4 HOH 86 327 91 HOH HOH A . G 4 HOH 87 328 92 HOH HOH A . G 4 HOH 88 329 93 HOH HOH A . G 4 HOH 89 330 95 HOH HOH A . G 4 HOH 90 331 96 HOH HOH A . G 4 HOH 91 332 97 HOH HOH A . G 4 HOH 92 333 98 HOH HOH A . G 4 HOH 93 334 99 HOH HOH A . G 4 HOH 94 335 100 HOH HOH A . G 4 HOH 95 336 101 HOH HOH A . G 4 HOH 96 337 102 HOH HOH A . G 4 HOH 97 338 103 HOH HOH A . G 4 HOH 98 339 104 HOH HOH A . G 4 HOH 99 340 105 HOH HOH A . G 4 HOH 100 341 107 HOH HOH A . G 4 HOH 101 342 108 HOH HOH A . G 4 HOH 102 343 109 HOH HOH A . G 4 HOH 103 344 110 HOH HOH A . G 4 HOH 104 345 111 HOH HOH A . G 4 HOH 105 346 112 HOH HOH A . G 4 HOH 106 347 113 HOH HOH A . G 4 HOH 107 348 114 HOH HOH A . G 4 HOH 108 349 115 HOH HOH A . G 4 HOH 109 350 116 HOH HOH A . G 4 HOH 110 351 117 HOH HOH A . G 4 HOH 111 352 118 HOH HOH A . G 4 HOH 112 353 120 HOH HOH A . G 4 HOH 113 354 121 HOH HOH A . G 4 HOH 114 355 122 HOH HOH A . G 4 HOH 115 356 123 HOH HOH A . G 4 HOH 116 357 124 HOH HOH A . G 4 HOH 117 358 125 HOH HOH A . G 4 HOH 118 359 127 HOH HOH A . G 4 HOH 119 360 128 HOH HOH A . G 4 HOH 120 361 129 HOH HOH A . G 4 HOH 121 362 130 HOH HOH A . G 4 HOH 122 363 131 HOH HOH A . G 4 HOH 123 364 132 HOH HOH A . G 4 HOH 124 365 133 HOH HOH A . G 4 HOH 125 366 134 HOH HOH A . G 4 HOH 126 367 136 HOH HOH A . G 4 HOH 127 368 137 HOH HOH A . G 4 HOH 128 369 138 HOH HOH A . G 4 HOH 129 370 139 HOH HOH A . G 4 HOH 130 371 140 HOH HOH A . G 4 HOH 131 372 143 HOH HOH A . G 4 HOH 132 373 144 HOH HOH A . G 4 HOH 133 374 147 HOH HOH A . G 4 HOH 134 375 148 HOH HOH A . G 4 HOH 135 376 149 HOH HOH A . G 4 HOH 136 377 150 HOH HOH A . G 4 HOH 137 378 151 HOH HOH A . G 4 HOH 138 379 152 HOH HOH A . G 4 HOH 139 380 153 HOH HOH A . G 4 HOH 140 381 154 HOH HOH A . G 4 HOH 141 382 156 HOH HOH A . G 4 HOH 142 383 157 HOH HOH A . G 4 HOH 143 384 158 HOH HOH A . G 4 HOH 144 385 161 HOH HOH A . G 4 HOH 145 386 162 HOH HOH A . G 4 HOH 146 387 165 HOH HOH A . G 4 HOH 147 388 166 HOH HOH A . G 4 HOH 148 389 167 HOH HOH A . G 4 HOH 149 390 168 HOH HOH A . G 4 HOH 150 391 170 HOH HOH A . G 4 HOH 151 392 172 HOH HOH A . G 4 HOH 152 393 173 HOH HOH A . G 4 HOH 153 394 177 HOH HOH A . G 4 HOH 154 395 178 HOH HOH A . G 4 HOH 155 396 179 HOH HOH A . G 4 HOH 156 397 180 HOH HOH A . G 4 HOH 157 398 183 HOH HOH A . G 4 HOH 158 399 185 HOH HOH A . G 4 HOH 159 400 186 HOH HOH A . G 4 HOH 160 401 187 HOH HOH A . G 4 HOH 161 402 188 HOH HOH A . G 4 HOH 162 403 189 HOH HOH A . G 4 HOH 163 404 190 HOH HOH A . G 4 HOH 164 405 191 HOH HOH A . G 4 HOH 165 406 192 HOH HOH A . G 4 HOH 166 407 193 HOH HOH A . G 4 HOH 167 408 194 HOH HOH A . G 4 HOH 168 409 195 HOH HOH A . G 4 HOH 169 410 197 HOH HOH A . G 4 HOH 170 411 199 HOH HOH A . G 4 HOH 171 412 200 HOH HOH A . G 4 HOH 172 413 201 HOH HOH A . G 4 HOH 173 414 203 HOH HOH A . G 4 HOH 174 415 204 HOH HOH A . G 4 HOH 175 416 205 HOH HOH A . G 4 HOH 176 417 207 HOH HOH A . G 4 HOH 177 418 209 HOH HOH A . G 4 HOH 178 419 211 HOH HOH A . G 4 HOH 179 420 212 HOH HOH A . G 4 HOH 180 421 214 HOH HOH A . G 4 HOH 181 422 217 HOH HOH A . G 4 HOH 182 423 218 HOH HOH A . G 4 HOH 183 424 220 HOH HOH A . G 4 HOH 184 425 221 HOH HOH A . G 4 HOH 185 426 223 HOH HOH A . G 4 HOH 186 427 224 HOH HOH A . G 4 HOH 187 428 225 HOH HOH A . G 4 HOH 188 429 226 HOH HOH A . G 4 HOH 189 430 227 HOH HOH A . G 4 HOH 190 431 230 HOH HOH A . G 4 HOH 191 432 231 HOH HOH A . G 4 HOH 192 433 232 HOH HOH A . G 4 HOH 193 434 233 HOH HOH A . G 4 HOH 194 435 234 HOH HOH A . G 4 HOH 195 436 236 HOH HOH A . G 4 HOH 196 437 237 HOH HOH A . G 4 HOH 197 438 238 HOH HOH A . G 4 HOH 198 439 240 HOH HOH A . G 4 HOH 199 440 241 HOH HOH A . G 4 HOH 200 441 242 HOH HOH A . G 4 HOH 201 442 243 HOH HOH A . G 4 HOH 202 443 244 HOH HOH A . G 4 HOH 203 444 246 HOH HOH A . G 4 HOH 204 445 249 HOH HOH A . G 4 HOH 205 446 250 HOH HOH A . G 4 HOH 206 447 251 HOH HOH A . G 4 HOH 207 448 253 HOH HOH A . G 4 HOH 208 449 261 HOH HOH A . G 4 HOH 209 450 266 HOH HOH A . G 4 HOH 210 451 270 HOH HOH A . G 4 HOH 211 452 272 HOH HOH A . G 4 HOH 212 453 275 HOH HOH A . G 4 HOH 213 454 276 HOH HOH A . G 4 HOH 214 455 277 HOH HOH A . G 4 HOH 215 456 278 HOH HOH A . G 4 HOH 216 457 279 HOH HOH A . G 4 HOH 217 458 281 HOH HOH A . G 4 HOH 218 459 282 HOH HOH A . G 4 HOH 219 460 285 HOH HOH A . G 4 HOH 220 461 286 HOH HOH A . G 4 HOH 221 462 287 HOH HOH A . G 4 HOH 222 463 288 HOH HOH A . G 4 HOH 223 464 289 HOH HOH A . G 4 HOH 224 465 290 HOH HOH A . G 4 HOH 225 466 291 HOH HOH A . G 4 HOH 226 467 292 HOH HOH A . G 4 HOH 227 468 293 HOH HOH A . G 4 HOH 228 469 294 HOH HOH A . G 4 HOH 229 470 295 HOH HOH A . #