HEADER HYDROLASE 13-MAR-08 3CJM TITLE CRYSTAL STRUCTURE OF PUTATIVE BETA-LACTAMASE (NP_815223.1) FROM TITLE 2 ENTEROCOCCUS FAECALIS V583 AT 1.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 33-313; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 226185; SOURCE 4 STRAIN: V583; SOURCE 5 ATCC: 700802; SOURCE 6 GENE: NP_815223.1, EF_1502; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_815223.1, PUTATIVE BETA-LACTAMASE, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3CJM 1 REMARK SEQADV REVDAT 5 24-JUL-19 3CJM 1 REMARK LINK REVDAT 4 25-OCT-17 3CJM 1 REMARK REVDAT 3 13-JUL-11 3CJM 1 VERSN REVDAT 2 24-FEB-09 3CJM 1 VERSN REVDAT 1 25-MAR-08 3CJM 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE BETA-LACTAMASE (NP_815223.1) JRNL TITL 2 FROM ENTEROCOCCUS FAECALIS V583 AT 1.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 48792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2470 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3311 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2012 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 352 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 14.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.059 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.870 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2218 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1475 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3032 ; 1.477 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3650 ; 1.416 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 293 ; 5.825 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;33.999 ;25.905 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 381 ;11.130 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;19.272 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 337 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2502 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 420 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1348 ; 1.414 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 533 ; 0.400 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2200 ; 2.192 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 870 ; 3.289 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 813 ; 5.036 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 313 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4371 13.6326 42.5873 REMARK 3 T TENSOR REMARK 3 T11: -0.0530 T22: -0.0108 REMARK 3 T33: -0.0296 T12: 0.0036 REMARK 3 T13: -0.0027 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.4105 L22: 0.5584 REMARK 3 L33: 0.6002 L12: 0.1044 REMARK 3 L13: 0.2098 L23: 0.2351 REMARK 3 S TENSOR REMARK 3 S11: 0.0128 S12: 0.0149 S13: -0.0166 REMARK 3 S21: -0.0383 S22: 0.0136 S23: -0.0210 REMARK 3 S31: 0.0148 S32: 0.0366 S33: -0.0263 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF REMARK 3 THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR REMARK 3 THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. NO3 AND EDO MODELED BASED ON CRYSTALLIZATION AND CRYO REMARK 3 CONDITIONS. REMARK 4 REMARK 4 3CJM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL1-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918381, 0.979051, 0.978489 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : 1M LONG RH COATED BENT REMARK 200 CYLINDRICAL MIRROR FOR REMARK 200 HORIZONTAL AND VERTICAL FOCUSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48842 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.501 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.54400 REMARK 200 R SYM FOR SHELL (I) : 0.54400 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M NH4NO3, 20.0% PEG 3350, REMARK 280 NO BUFFER PH 6.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.45250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.48750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.48750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.22625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.48750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.48750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.67875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.48750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.48750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.22625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.48750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.48750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 105.67875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.45250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 33 REMARK 465 LYS A 34 REMARK 465 GLU A 35 REMARK 465 SER A 36 REMARK 465 GLU A 37 REMARK 465 GLN A 38 REMARK 465 LYS A 39 REMARK 465 VAL A 40 REMARK 465 THR A 41 REMARK 465 ILE A 42 REMARK 465 ASP A 43 REMARK 465 SER A 44 REMARK 465 ALA A 45 REMARK 465 LYS A 46 REMARK 465 HIS A 47 REMARK 465 GLU A 48 REMARK 465 LYS A 49 REMARK 465 HIS A 50 REMARK 465 THR A 51 REMARK 465 LYS A 52 REMARK 465 ASP A 53 REMARK 465 LYS A 54 REMARK 465 GLU A 55 REMARK 465 GLU A 56 REMARK 465 ASN A 57 REMARK 465 ASN A 58 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 59 OG REMARK 470 LYS A 77 CE NZ REMARK 470 GLU A 78 CD OE1 OE2 REMARK 470 GLU A 80 CD OE1 OE2 REMARK 470 LYS A 159 CD CE NZ REMARK 470 GLU A 203 CD OE1 OE2 REMARK 470 GLU A 204 CD OE1 OE2 REMARK 470 LYS A 253 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 101 OE1 GLU A 210 1.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 96 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 107 -146.06 46.02 REMARK 500 GLU A 143 -150.65 -90.15 REMARK 500 ASN A 151 63.99 -161.69 REMARK 500 ARG A 244 -113.64 60.86 REMARK 500 TYR A 261 112.97 -161.39 REMARK 500 ASP A 262 -119.41 52.64 REMARK 500 ASP A 262 -116.71 48.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 389964 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. REMARK 999 THE CONSTRUCT CONTAINS RESIDUES 33-313 REMARK 999 OF THE TARGET SEQUENCE. DBREF 3CJM A 33 313 UNP Q834X5 Q834X5_ENTFA 33 313 SEQADV 3CJM GLY A 0 UNP Q834X5 EXPRESSION TAG SEQRES 1 A 282 GLY ALA LYS GLU SER GLU GLN LYS VAL THR ILE ASP SER SEQRES 2 A 282 ALA LYS HIS GLU LYS HIS THR LYS ASP LYS GLU GLU ASN SEQRES 3 A 282 ASN SER ALA ASN THR VAL PHE PHE ASP LYS ILE ASN ASP SEQRES 4 A 282 LEU LEU VAL ALA SER VAL LYS GLU PHE GLU GLY THR VAL SEQRES 5 A 282 GLY ILE SER TYR LEU ASP LEU GLU THR GLY GLU GLN ARG SEQRES 6 A 282 SER VAL ASN GLY GLN HIS GLU PHE TYR THR ALA SER THR SEQRES 7 A 282 ILE LYS VAL PRO LEU THR MSE LEU VAL ALA ASP THR VAL SEQRES 8 A 282 ALA SER GLY GLN LYS LYS TRP THR ASP LEU ILE PRO TYR SEQRES 9 A 282 ASN ALA GLU GLU ASP TYR GLU GLU GLY THR GLY ILE ILE SEQRES 10 A 282 ALA TYR ASN ILE GLN PRO GLU TYR PRO LEU LYS THR LEU SEQRES 11 A 282 GLN GLU TYR ALA ILE THR TYR SER ASP ASN ILE ALA LYS SEQRES 12 A 282 ASN MSE LEU TYR ASP THR LEU GLY GLY ASP ALA LYS ALA SEQRES 13 A 282 LYS ARG GLU MSE TYR GLN ARG TYR LEU HIS LYS THR PRO SEQRES 14 A 282 SER ILE GLU GLU PRO GLN PHE SER SER GLU ASP ALA LEU SEQRES 15 A 282 VAL ILE LEU GLN LYS LEU TYR THR GLU LYS ALA THR LYS SEQRES 16 A 282 PRO ASP TYR GLN ALA ILE TYR ASP SER MSE LYS GLN SER SEQRES 17 A 282 VAL PHE HIS GLU ARG MSE GLU THR PRO THR THR GLN GLY SEQRES 18 A 282 LYS VAL ALA HIS LYS ILE GLY SER TYR ASP GLU PHE ILE SEQRES 19 A 282 HIS ASP MSE GLY ILE LEU GLU THR PRO HIS PRO PHE ALA SEQRES 20 A 282 LEU ALA ILE PHE THR LYS GLY PRO ASP ASN ALA LYS SER SEQRES 21 A 282 ALA ALA PHE ILE ALA SER VAL THR ASP LYS LEU TRP GLN SEQRES 22 A 282 LEU GLN VAL SER GLU TYR PRO ASN GLN MODRES 3CJM MSE A 116 MET SELENOMETHIONINE MODRES 3CJM MSE A 176 MET SELENOMETHIONINE MODRES 3CJM MSE A 191 MET SELENOMETHIONINE MODRES 3CJM MSE A 236 MET SELENOMETHIONINE MODRES 3CJM MSE A 245 MET SELENOMETHIONINE MODRES 3CJM MSE A 268 MET SELENOMETHIONINE HET MSE A 116 8 HET MSE A 176 8 HET MSE A 191 8 HET MSE A 236 8 HET MSE A 245 13 HET MSE A 268 8 HET NO3 A 1 4 HET NO3 A 2 4 HET EDO A 3 4 HET EDO A 4 4 HET EDO A 5 4 HET EDO A 6 4 HET EDO A 7 4 HET EDO A 8 4 HETNAM MSE SELENOMETHIONINE HETNAM NO3 NITRATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 NO3 2(N O3 1-) FORMUL 4 EDO 6(C2 H6 O2) FORMUL 10 HOH *352(H2 O) HELIX 1 1 SER A 59 PHE A 79 1 21 HELIX 2 2 ALA A 107 THR A 109 5 3 HELIX 3 3 ILE A 110 SER A 124 1 15 HELIX 4 4 ASN A 136 TYR A 141 1 6 HELIX 5 5 ILE A 147 ASN A 151 5 5 HELIX 6 6 LEU A 158 TYR A 168 1 11 HELIX 7 7 ASP A 170 LEU A 181 1 12 HELIX 8 8 GLY A 183 LEU A 196 1 14 HELIX 9 9 SER A 208 LYS A 223 1 16 HELIX 10 10 LYS A 226 GLN A 238 1 13 HELIX 11 11 ASP A 287 GLU A 309 1 23 SHEET 1 A 5 GLN A 95 VAL A 98 0 SHEET 2 A 5 THR A 82 ASP A 89 -1 N TYR A 87 O ARG A 96 SHEET 3 A 5 PHE A 277 LYS A 284 -1 O LYS A 284 N THR A 82 SHEET 4 A 5 PHE A 264 LEU A 271 -1 N LEU A 271 O PHE A 277 SHEET 5 A 5 VAL A 254 TYR A 261 -1 N GLY A 259 O HIS A 266 SHEET 1 B 2 PHE A 104 TYR A 105 0 SHEET 2 B 2 GLN A 206 PHE A 207 -1 O PHE A 207 N PHE A 104 SHEET 1 C 2 LEU A 132 PRO A 134 0 SHEET 2 C 2 GLU A 155 PRO A 157 -1 O TYR A 156 N ILE A 133 LINK C THR A 115 N MSE A 116 1555 1555 1.32 LINK C MSE A 116 N LEU A 117 1555 1555 1.33 LINK C ASN A 175 N MSE A 176 1555 1555 1.33 LINK C MSE A 176 N LEU A 177 1555 1555 1.33 LINK C GLU A 190 N MSE A 191 1555 1555 1.32 LINK C MSE A 191 N TYR A 192 1555 1555 1.33 LINK C SER A 235 N MSE A 236 1555 1555 1.34 LINK C MSE A 236 N LYS A 237 1555 1555 1.32 LINK C ARG A 244 N MSE A 245 1555 1555 1.33 LINK C MSE A 245 N GLU A 246 1555 1555 1.34 LINK C ASP A 267 N MSE A 268 1555 1555 1.31 LINK C MSE A 268 N GLY A 269 1555 1555 1.31 SITE 1 AC1 7 TYR A 105 ALA A 107 SER A 108 ILE A 110 SITE 2 AC1 7 LYS A 111 LYS A 174 HOH A 611 SITE 1 AC2 6 THR A 145 ARG A 189 GLN A 193 HOH A 391 SITE 2 AC2 6 HOH A 530 HOH A 590 SITE 1 AC3 2 LYS A 77 HOH A 339 SITE 1 AC4 5 THR A 145 GLY A 146 GLN A 193 HOH A 584 SITE 2 AC4 5 HOH A 659 SITE 1 AC5 4 GLU A 246 THR A 247 PRO A 248 GLN A 251 SITE 1 AC6 5 GLU A 243 ARG A 244 ASN A 288 ALA A 292 SITE 2 AC6 5 HOH A 571 SITE 1 AC7 4 LYS A 186 GLU A 243 ARG A 244 HOH A 545 SITE 1 AC8 8 ALA A 185 ARG A 189 PHE A 241 HIS A 242 SITE 2 AC8 8 GLU A 243 HOH A 391 HOH A 523 HOH A 663 CRYST1 64.975 64.975 140.905 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015391 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015391 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007097 0.00000