data_3CJN # _entry.id 3CJN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3CJN RCSB RCSB046856 WWPDB D_1000046856 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC88806 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3CJN _pdbx_database_status.recvd_initial_deposition_date 2008-03-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chang, C.' 1 'Volkart, L.' 2 'Freeman, L.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Crystal structure of MarR family transcriptional regulator from Silicibacter pomeroyi.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chang, C.' 1 primary 'Volkart, L.' 2 primary 'Freeman, L.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 3CJN _cell.length_a 87.976 _cell.length_b 87.976 _cell.length_c 43.197 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3CJN _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional regulator, MarR family' 18475.852 1 ? ? ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 3 water nat water 18.015 142 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)AESTDQTEQLRELAEIGLEGYAPYL(MSE)NRI(MSE)GRYNANLRKE(MSE)TALGLSTAK(MSE)RALAI LSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLWPH(MSE)RASHDR (MSE)FQGITPQERQAFLATLNK(MSE)LANIRVHEI ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMAESTDQTEQLRELAEIGLEGYAPYLMNRIMGRYNANLRKEMTALGLSTAKMRALAILSAKDGLPIGTLGIFAVVEQ STLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLWPHMRASHDRMFQGITPQERQAFLATLNKMLANIRVH EI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC88806 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 ALA n 1 6 GLU n 1 7 SER n 1 8 THR n 1 9 ASP n 1 10 GLN n 1 11 THR n 1 12 GLU n 1 13 GLN n 1 14 LEU n 1 15 ARG n 1 16 GLU n 1 17 LEU n 1 18 ALA n 1 19 GLU n 1 20 ILE n 1 21 GLY n 1 22 LEU n 1 23 GLU n 1 24 GLY n 1 25 TYR n 1 26 ALA n 1 27 PRO n 1 28 TYR n 1 29 LEU n 1 30 MSE n 1 31 ASN n 1 32 ARG n 1 33 ILE n 1 34 MSE n 1 35 GLY n 1 36 ARG n 1 37 TYR n 1 38 ASN n 1 39 ALA n 1 40 ASN n 1 41 LEU n 1 42 ARG n 1 43 LYS n 1 44 GLU n 1 45 MSE n 1 46 THR n 1 47 ALA n 1 48 LEU n 1 49 GLY n 1 50 LEU n 1 51 SER n 1 52 THR n 1 53 ALA n 1 54 LYS n 1 55 MSE n 1 56 ARG n 1 57 ALA n 1 58 LEU n 1 59 ALA n 1 60 ILE n 1 61 LEU n 1 62 SER n 1 63 ALA n 1 64 LYS n 1 65 ASP n 1 66 GLY n 1 67 LEU n 1 68 PRO n 1 69 ILE n 1 70 GLY n 1 71 THR n 1 72 LEU n 1 73 GLY n 1 74 ILE n 1 75 PHE n 1 76 ALA n 1 77 VAL n 1 78 VAL n 1 79 GLU n 1 80 GLN n 1 81 SER n 1 82 THR n 1 83 LEU n 1 84 SER n 1 85 ARG n 1 86 ALA n 1 87 LEU n 1 88 ASP n 1 89 GLY n 1 90 LEU n 1 91 GLN n 1 92 ALA n 1 93 ASP n 1 94 GLY n 1 95 LEU n 1 96 VAL n 1 97 ARG n 1 98 ARG n 1 99 GLU n 1 100 VAL n 1 101 ASP n 1 102 SER n 1 103 ASP n 1 104 ASP n 1 105 GLN n 1 106 ARG n 1 107 SER n 1 108 SER n 1 109 ARG n 1 110 VAL n 1 111 TYR n 1 112 LEU n 1 113 THR n 1 114 PRO n 1 115 ALA n 1 116 GLY n 1 117 ARG n 1 118 ALA n 1 119 VAL n 1 120 TYR n 1 121 ASP n 1 122 ARG n 1 123 LEU n 1 124 TRP n 1 125 PRO n 1 126 HIS n 1 127 MSE n 1 128 ARG n 1 129 ALA n 1 130 SER n 1 131 HIS n 1 132 ASP n 1 133 ARG n 1 134 MSE n 1 135 PHE n 1 136 GLN n 1 137 GLY n 1 138 ILE n 1 139 THR n 1 140 PRO n 1 141 GLN n 1 142 GLU n 1 143 ARG n 1 144 GLN n 1 145 ALA n 1 146 PHE n 1 147 LEU n 1 148 ALA n 1 149 THR n 1 150 LEU n 1 151 ASN n 1 152 LYS n 1 153 MSE n 1 154 LEU n 1 155 ALA n 1 156 ASN n 1 157 ILE n 1 158 ARG n 1 159 VAL n 1 160 HIS n 1 161 GLU n 1 162 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Silicibacter _entity_src_gen.pdbx_gene_src_gene SPO1458 _entity_src_gen.gene_src_species 'Silicibacter pomeroyi' _entity_src_gen.gene_src_strain 'DSS-3 / DSM 15171' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Silicibacter pomeroyi DSS-3' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 246200 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 700808 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)star' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5LTF6_SILPO _struct_ref.pdbx_db_accession Q5LTF6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAESTDQTEQLRELAEIGLEGYAPYLMNRIMGRYNANLRKEMTALGLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTL SRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLWPHMRASHDRMFQGITPQERQAFLATLNKMLANIRVHEI ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3CJN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 162 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5LTF6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 159 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 159 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3CJN SER A 1 ? UNP Q5LTF6 ? ? 'EXPRESSION TAG' -2 1 1 3CJN ASN A 2 ? UNP Q5LTF6 ? ? 'EXPRESSION TAG' -1 2 1 3CJN ALA A 3 ? UNP Q5LTF6 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3CJN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_percent_sol 45.62 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 281 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '0.1 Succinic acid pH 7.0, 12 % PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 281K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-11-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97935 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97935 # _reflns.entry_id 3CJN _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 1.95 _reflns.d_resolution_low 50 _reflns.number_all 12944 _reflns.number_obs 12941 _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.094 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 77.2 _reflns.B_iso_Wilson_estimate 28.0 _reflns.pdbx_redundancy 21.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.02 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.472 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 14.5 _reflns_shell.pdbx_redundancy 21.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1263 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3CJN _refine.ls_number_reflns_obs 12819 _refine.ls_number_reflns_all 12819 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.98 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 99.20 _refine.ls_R_factor_obs 0.18119 _refine.ls_R_factor_all 0.18119 _refine.ls_R_factor_R_work 0.17912 _refine.ls_R_factor_R_free 0.22257 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 624 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.938 _refine.B_iso_mean 32.927 _refine.aniso_B[1][1] -0.75 _refine.aniso_B[2][2] -0.75 _refine.aniso_B[3][3] 1.50 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.153 _refine.pdbx_overall_ESU_R_Free 0.144 _refine.overall_SU_ML 0.092 _refine.overall_SU_B 5.913 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1133 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 142 _refine_hist.number_atoms_total 1280 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 43.98 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 1172 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.282 1.981 ? 1583 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.126 5.000 ? 148 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 22.835 21.923 ? 52 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.965 15.000 ? 209 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.392 15.000 ? 15 'X-RAY DIFFRACTION' ? r_chiral_restr 0.098 0.200 ? 178 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 880 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.210 0.200 ? 535 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.303 0.200 ? 821 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.132 0.200 ? 106 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.266 0.200 ? 64 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.176 0.200 ? 19 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.857 1.500 ? 764 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.329 2.000 ? 1169 'X-RAY DIFFRACTION' ? r_scbond_it 2.006 3.000 ? 463 'X-RAY DIFFRACTION' ? r_scangle_it 2.881 4.500 ? 414 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.950 _refine_ls_shell.d_res_low 1.997 _refine_ls_shell.number_reflns_R_work 864 _refine_ls_shell.R_factor_R_work 0.191 _refine_ls_shell.percent_reflns_obs 96.26 _refine_ls_shell.R_factor_R_free 0.293 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 36 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 900 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3CJN _struct.title 'Crystal structure of transcriptional regulator, MarR family, from Silicibacter pomeroyi' _struct.pdbx_descriptor 'Transcriptional regulator, MarR family' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3CJN _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR' _struct_keywords.text ;Transcriptional regulator, MarR family, Silicibacter pomeroyi, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, DNA-binding, Transcription regulation, TRANSCRIPTION REGULATOR ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 16 ? GLY A 21 ? GLU A 13 GLY A 18 1 ? 6 HELX_P HELX_P2 2 LEU A 22 ? GLY A 24 ? LEU A 19 GLY A 21 5 ? 3 HELX_P HELX_P3 3 TYR A 25 ? LYS A 43 ? TYR A 22 LYS A 40 1 ? 19 HELX_P HELX_P4 4 GLU A 44 ? GLY A 49 ? GLU A 41 GLY A 46 1 ? 6 HELX_P HELX_P5 5 SER A 51 ? LYS A 64 ? SER A 48 LYS A 61 1 ? 14 HELX_P HELX_P6 6 ILE A 69 ? VAL A 77 ? ILE A 66 VAL A 74 1 ? 9 HELX_P HELX_P7 7 GLU A 79 ? ASP A 93 ? GLU A 76 ASP A 90 1 ? 15 HELX_P HELX_P8 8 THR A 113 ? PHE A 135 ? THR A 110 PHE A 132 1 ? 23 HELX_P HELX_P9 9 THR A 139 ? ARG A 158 ? THR A 136 ARG A 155 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LEU 29 C ? ? ? 1_555 A MSE 30 N ? ? A LEU 26 A MSE 27 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A MSE 30 C ? ? ? 1_555 A ASN 31 N ? ? A MSE 27 A ASN 28 1_555 ? ? ? ? ? ? ? 1.339 ? covale3 covale ? ? A ILE 33 C ? ? ? 1_555 A MSE 34 N ? ? A ILE 30 A MSE 31 1_555 ? ? ? ? ? ? ? 1.339 ? covale4 covale ? ? A MSE 34 C ? ? ? 1_555 A GLY 35 N ? ? A MSE 31 A GLY 32 1_555 ? ? ? ? ? ? ? 1.327 ? covale5 covale ? ? A GLU 44 C ? ? ? 1_555 A MSE 45 N ? ? A GLU 41 A MSE 42 1_555 ? ? ? ? ? ? ? 1.339 ? covale6 covale ? ? A MSE 45 C ? ? ? 1_555 A THR 46 N ? ? A MSE 42 A THR 43 1_555 ? ? ? ? ? ? ? 1.334 ? covale7 covale ? ? A LYS 54 C ? ? ? 1_555 A MSE 55 N ? ? A LYS 51 A MSE 52 1_555 ? ? ? ? ? ? ? 1.334 ? covale8 covale ? ? A MSE 55 C ? ? ? 1_555 A ARG 56 N ? ? A MSE 52 A ARG 53 1_555 ? ? ? ? ? ? ? 1.334 ? covale9 covale ? ? A HIS 126 C ? ? ? 1_555 A MSE 127 N ? ? A HIS 123 A MSE 124 1_555 ? ? ? ? ? ? ? 1.334 ? covale10 covale ? ? A MSE 127 C ? ? ? 1_555 A ARG 128 N ? ? A MSE 124 A ARG 125 1_555 ? ? ? ? ? ? ? 1.335 ? covale11 covale ? ? A ARG 133 C ? ? ? 1_555 A MSE 134 N ? ? A ARG 130 A MSE 131 1_555 ? ? ? ? ? ? ? 1.337 ? covale12 covale ? ? A MSE 134 C ? ? ? 1_555 A PHE 135 N ? ? A MSE 131 A PHE 132 1_555 ? ? ? ? ? ? ? 1.336 ? covale13 covale ? ? A LYS 152 C ? ? ? 1_555 A MSE 153 N ? ? A LYS 149 A MSE 150 1_555 ? ? ? ? ? ? ? 1.324 ? covale14 covale ? ? A MSE 153 C ? ? ? 1_555 A LEU 154 N ? ? A MSE 150 A LEU 151 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 67 ? PRO A 68 ? LEU A 64 PRO A 65 A 2 SER A 108 ? LEU A 112 ? SER A 105 LEU A 109 A 3 VAL A 96 ? VAL A 100 ? VAL A 93 VAL A 97 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 67 ? N LEU A 64 O VAL A 110 ? O VAL A 107 A 2 3 O ARG A 109 ? O ARG A 106 N GLU A 99 ? N GLU A 96 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE PO4 A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ARG A 32 ? ARG A 29 . ? 1_555 ? 2 AC1 6 ARG A 36 ? ARG A 33 . ? 1_555 ? 3 AC1 6 ARG A 158 ? ARG A 155 . ? 7_556 ? 4 AC1 6 HIS A 160 ? HIS A 157 . ? 7_556 ? 5 AC1 6 HOH C . ? HOH A 211 . ? 1_555 ? 6 AC1 6 HOH C . ? HOH A 285 . ? 1_555 ? # _database_PDB_matrix.entry_id 3CJN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3CJN _atom_sites.fract_transf_matrix[1][1] 0.011367 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011367 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023150 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 ALA 5 2 ? ? ? A . n A 1 6 GLU 6 3 ? ? ? A . n A 1 7 SER 7 4 ? ? ? A . n A 1 8 THR 8 5 ? ? ? A . n A 1 9 ASP 9 6 ? ? ? A . n A 1 10 GLN 10 7 ? ? ? A . n A 1 11 THR 11 8 ? ? ? A . n A 1 12 GLU 12 9 ? ? ? A . n A 1 13 GLN 13 10 ? ? ? A . n A 1 14 LEU 14 11 ? ? ? A . n A 1 15 ARG 15 12 12 ARG ALA A . n A 1 16 GLU 16 13 13 GLU GLU A . n A 1 17 LEU 17 14 14 LEU LEU A . n A 1 18 ALA 18 15 15 ALA ALA A . n A 1 19 GLU 19 16 16 GLU GLU A . n A 1 20 ILE 20 17 17 ILE ILE A . n A 1 21 GLY 21 18 18 GLY GLY A . n A 1 22 LEU 22 19 19 LEU LEU A . n A 1 23 GLU 23 20 20 GLU GLU A . n A 1 24 GLY 24 21 21 GLY GLY A . n A 1 25 TYR 25 22 22 TYR TYR A . n A 1 26 ALA 26 23 23 ALA ALA A . n A 1 27 PRO 27 24 24 PRO PRO A . n A 1 28 TYR 28 25 25 TYR TYR A . n A 1 29 LEU 29 26 26 LEU LEU A . n A 1 30 MSE 30 27 27 MSE MSE A . n A 1 31 ASN 31 28 28 ASN ASN A . n A 1 32 ARG 32 29 29 ARG ARG A . n A 1 33 ILE 33 30 30 ILE ILE A . n A 1 34 MSE 34 31 31 MSE MSE A . n A 1 35 GLY 35 32 32 GLY GLY A . n A 1 36 ARG 36 33 33 ARG ARG A . n A 1 37 TYR 37 34 34 TYR TYR A . n A 1 38 ASN 38 35 35 ASN ASN A . n A 1 39 ALA 39 36 36 ALA ALA A . n A 1 40 ASN 40 37 37 ASN ASN A . n A 1 41 LEU 41 38 38 LEU LEU A . n A 1 42 ARG 42 39 39 ARG ARG A . n A 1 43 LYS 43 40 40 LYS LYS A . n A 1 44 GLU 44 41 41 GLU GLU A . n A 1 45 MSE 45 42 42 MSE MSE A . n A 1 46 THR 46 43 43 THR ALA A . n A 1 47 ALA 47 44 44 ALA ALA A . n A 1 48 LEU 48 45 45 LEU LEU A . n A 1 49 GLY 49 46 46 GLY GLY A . n A 1 50 LEU 50 47 47 LEU LEU A . n A 1 51 SER 51 48 48 SER SER A . n A 1 52 THR 52 49 49 THR THR A . n A 1 53 ALA 53 50 50 ALA ALA A . n A 1 54 LYS 54 51 51 LYS LYS A . n A 1 55 MSE 55 52 52 MSE MSE A . n A 1 56 ARG 56 53 53 ARG ARG A . n A 1 57 ALA 57 54 54 ALA ALA A . n A 1 58 LEU 58 55 55 LEU LEU A . n A 1 59 ALA 59 56 56 ALA ALA A . n A 1 60 ILE 60 57 57 ILE ILE A . n A 1 61 LEU 61 58 58 LEU LEU A . n A 1 62 SER 62 59 59 SER SER A . n A 1 63 ALA 63 60 60 ALA ALA A . n A 1 64 LYS 64 61 61 LYS LYS A . n A 1 65 ASP 65 62 62 ASP ASP A . n A 1 66 GLY 66 63 63 GLY GLY A . n A 1 67 LEU 67 64 64 LEU LEU A . n A 1 68 PRO 68 65 65 PRO PRO A . n A 1 69 ILE 69 66 66 ILE ILE A . n A 1 70 GLY 70 67 67 GLY GLY A . n A 1 71 THR 71 68 68 THR THR A . n A 1 72 LEU 72 69 69 LEU LEU A . n A 1 73 GLY 73 70 70 GLY GLY A . n A 1 74 ILE 74 71 71 ILE ILE A . n A 1 75 PHE 75 72 72 PHE PHE A . n A 1 76 ALA 76 73 73 ALA ALA A . n A 1 77 VAL 77 74 74 VAL VAL A . n A 1 78 VAL 78 75 75 VAL VAL A . n A 1 79 GLU 79 76 76 GLU GLU A . n A 1 80 GLN 80 77 77 GLN GLN A . n A 1 81 SER 81 78 78 SER SER A . n A 1 82 THR 82 79 79 THR THR A . n A 1 83 LEU 83 80 80 LEU LEU A . n A 1 84 SER 84 81 81 SER SER A . n A 1 85 ARG 85 82 82 ARG ARG A . n A 1 86 ALA 86 83 83 ALA ALA A . n A 1 87 LEU 87 84 84 LEU LEU A . n A 1 88 ASP 88 85 85 ASP ASP A . n A 1 89 GLY 89 86 86 GLY GLY A . n A 1 90 LEU 90 87 87 LEU LEU A . n A 1 91 GLN 91 88 88 GLN GLN A . n A 1 92 ALA 92 89 89 ALA ALA A . n A 1 93 ASP 93 90 90 ASP ASP A . n A 1 94 GLY 94 91 91 GLY GLY A . n A 1 95 LEU 95 92 92 LEU LEU A . n A 1 96 VAL 96 93 93 VAL VAL A . n A 1 97 ARG 97 94 94 ARG ARG A . n A 1 98 ARG 98 95 95 ARG ARG A . n A 1 99 GLU 99 96 96 GLU GLU A . n A 1 100 VAL 100 97 97 VAL VAL A . n A 1 101 ASP 101 98 98 ASP ASP A . n A 1 102 SER 102 99 ? ? ? A . n A 1 103 ASP 103 100 ? ? ? A . n A 1 104 ASP 104 101 101 ASP ALA A . n A 1 105 GLN 105 102 102 GLN ALA A . n A 1 106 ARG 106 103 103 ARG ARG A . n A 1 107 SER 107 104 104 SER SER A . n A 1 108 SER 108 105 105 SER SER A . n A 1 109 ARG 109 106 106 ARG ARG A . n A 1 110 VAL 110 107 107 VAL VAL A . n A 1 111 TYR 111 108 108 TYR TYR A . n A 1 112 LEU 112 109 109 LEU LEU A . n A 1 113 THR 113 110 110 THR THR A . n A 1 114 PRO 114 111 111 PRO PRO A . n A 1 115 ALA 115 112 112 ALA ALA A . n A 1 116 GLY 116 113 113 GLY GLY A . n A 1 117 ARG 117 114 114 ARG ARG A . n A 1 118 ALA 118 115 115 ALA ALA A . n A 1 119 VAL 119 116 116 VAL VAL A . n A 1 120 TYR 120 117 117 TYR TYR A . n A 1 121 ASP 121 118 118 ASP ASP A . n A 1 122 ARG 122 119 119 ARG ARG A . n A 1 123 LEU 123 120 120 LEU LEU A . n A 1 124 TRP 124 121 121 TRP TRP A . n A 1 125 PRO 125 122 122 PRO PRO A . n A 1 126 HIS 126 123 123 HIS HIS A . n A 1 127 MSE 127 124 124 MSE MSE A . n A 1 128 ARG 128 125 125 ARG ARG A . n A 1 129 ALA 129 126 126 ALA ALA A . n A 1 130 SER 130 127 127 SER SER A . n A 1 131 HIS 131 128 128 HIS HIS A . n A 1 132 ASP 132 129 129 ASP ASP A . n A 1 133 ARG 133 130 130 ARG ARG A . n A 1 134 MSE 134 131 131 MSE MSE A . n A 1 135 PHE 135 132 132 PHE PHE A . n A 1 136 GLN 136 133 133 GLN GLN A . n A 1 137 GLY 137 134 134 GLY GLY A . n A 1 138 ILE 138 135 135 ILE ILE A . n A 1 139 THR 139 136 136 THR THR A . n A 1 140 PRO 140 137 137 PRO PRO A . n A 1 141 GLN 141 138 138 GLN GLN A . n A 1 142 GLU 142 139 139 GLU GLU A . n A 1 143 ARG 143 140 140 ARG ARG A . n A 1 144 GLN 144 141 141 GLN GLN A . n A 1 145 ALA 145 142 142 ALA ALA A . n A 1 146 PHE 146 143 143 PHE PHE A . n A 1 147 LEU 147 144 144 LEU LEU A . n A 1 148 ALA 148 145 145 ALA ALA A . n A 1 149 THR 149 146 146 THR THR A . n A 1 150 LEU 150 147 147 LEU LEU A . n A 1 151 ASN 151 148 148 ASN ASN A . n A 1 152 LYS 152 149 149 LYS LYS A . n A 1 153 MSE 153 150 150 MSE MSE A . n A 1 154 LEU 154 151 151 LEU LEU A . n A 1 155 ALA 155 152 152 ALA ALA A . n A 1 156 ASN 156 153 153 ASN ASN A . n A 1 157 ILE 157 154 154 ILE ILE A . n A 1 158 ARG 158 155 155 ARG ARG A . n A 1 159 VAL 159 156 156 VAL VAL A . n A 1 160 HIS 160 157 157 HIS HIS A . n A 1 161 GLU 161 158 158 GLU GLU A . n A 1 162 ILE 162 159 159 ILE ILE A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 201 201 PO4 PO4 A . C 3 HOH 1 202 1 HOH HOH A . C 3 HOH 2 203 2 HOH HOH A . C 3 HOH 3 204 3 HOH HOH A . C 3 HOH 4 205 4 HOH HOH A . C 3 HOH 5 206 5 HOH HOH A . C 3 HOH 6 207 6 HOH HOH A . C 3 HOH 7 208 7 HOH HOH A . C 3 HOH 8 209 8 HOH HOH A . C 3 HOH 9 210 9 HOH HOH A . C 3 HOH 10 211 10 HOH HOH A . C 3 HOH 11 212 11 HOH HOH A . C 3 HOH 12 213 12 HOH HOH A . C 3 HOH 13 214 13 HOH HOH A . C 3 HOH 14 215 14 HOH HOH A . C 3 HOH 15 216 15 HOH HOH A . C 3 HOH 16 217 16 HOH HOH A . C 3 HOH 17 218 17 HOH HOH A . C 3 HOH 18 219 18 HOH HOH A . C 3 HOH 19 220 19 HOH HOH A . C 3 HOH 20 221 20 HOH HOH A . C 3 HOH 21 222 21 HOH HOH A . C 3 HOH 22 223 22 HOH HOH A . C 3 HOH 23 224 23 HOH HOH A . C 3 HOH 24 225 24 HOH HOH A . C 3 HOH 25 226 25 HOH HOH A . C 3 HOH 26 227 26 HOH HOH A . C 3 HOH 27 228 27 HOH HOH A . C 3 HOH 28 229 28 HOH HOH A . C 3 HOH 29 230 29 HOH HOH A . C 3 HOH 30 231 30 HOH HOH A . C 3 HOH 31 232 31 HOH HOH A . C 3 HOH 32 233 32 HOH HOH A . C 3 HOH 33 234 33 HOH HOH A . C 3 HOH 34 235 34 HOH HOH A . C 3 HOH 35 236 35 HOH HOH A . C 3 HOH 36 237 36 HOH HOH A . C 3 HOH 37 238 37 HOH HOH A . C 3 HOH 38 239 38 HOH HOH A . C 3 HOH 39 240 39 HOH HOH A . C 3 HOH 40 241 40 HOH HOH A . C 3 HOH 41 242 41 HOH HOH A . C 3 HOH 42 243 42 HOH HOH A . C 3 HOH 43 244 43 HOH HOH A . C 3 HOH 44 245 44 HOH HOH A . C 3 HOH 45 246 45 HOH HOH A . C 3 HOH 46 247 46 HOH HOH A . C 3 HOH 47 248 47 HOH HOH A . C 3 HOH 48 249 48 HOH HOH A . C 3 HOH 49 250 49 HOH HOH A . C 3 HOH 50 251 50 HOH HOH A . C 3 HOH 51 252 51 HOH HOH A . C 3 HOH 52 253 52 HOH HOH A . C 3 HOH 53 254 53 HOH HOH A . C 3 HOH 54 255 54 HOH HOH A . C 3 HOH 55 256 55 HOH HOH A . C 3 HOH 56 257 56 HOH HOH A . C 3 HOH 57 258 57 HOH HOH A . C 3 HOH 58 259 58 HOH HOH A . C 3 HOH 59 260 59 HOH HOH A . C 3 HOH 60 261 60 HOH HOH A . C 3 HOH 61 262 61 HOH HOH A . C 3 HOH 62 263 62 HOH HOH A . C 3 HOH 63 264 63 HOH HOH A . C 3 HOH 64 265 64 HOH HOH A . C 3 HOH 65 266 65 HOH HOH A . C 3 HOH 66 267 66 HOH HOH A . C 3 HOH 67 268 67 HOH HOH A . C 3 HOH 68 269 68 HOH HOH A . C 3 HOH 69 270 69 HOH HOH A . C 3 HOH 70 271 70 HOH HOH A . C 3 HOH 71 272 71 HOH HOH A . C 3 HOH 72 273 72 HOH HOH A . C 3 HOH 73 274 73 HOH HOH A . C 3 HOH 74 275 74 HOH HOH A . C 3 HOH 75 276 75 HOH HOH A . C 3 HOH 76 277 76 HOH HOH A . C 3 HOH 77 278 77 HOH HOH A . C 3 HOH 78 279 78 HOH HOH A . C 3 HOH 79 280 79 HOH HOH A . C 3 HOH 80 281 80 HOH HOH A . C 3 HOH 81 282 81 HOH HOH A . C 3 HOH 82 283 82 HOH HOH A . C 3 HOH 83 284 83 HOH HOH A . C 3 HOH 84 285 84 HOH HOH A . C 3 HOH 85 286 85 HOH HOH A . C 3 HOH 86 287 86 HOH HOH A . C 3 HOH 87 288 87 HOH HOH A . C 3 HOH 88 289 88 HOH HOH A . C 3 HOH 89 290 89 HOH HOH A . C 3 HOH 90 291 90 HOH HOH A . C 3 HOH 91 292 91 HOH HOH A . C 3 HOH 92 293 92 HOH HOH A . C 3 HOH 93 294 93 HOH HOH A . C 3 HOH 94 295 94 HOH HOH A . C 3 HOH 95 296 95 HOH HOH A . C 3 HOH 96 297 96 HOH HOH A . C 3 HOH 97 298 97 HOH HOH A . C 3 HOH 98 299 98 HOH HOH A . C 3 HOH 99 300 99 HOH HOH A . C 3 HOH 100 301 100 HOH HOH A . C 3 HOH 101 302 101 HOH HOH A . C 3 HOH 102 303 102 HOH HOH A . C 3 HOH 103 304 103 HOH HOH A . C 3 HOH 104 305 104 HOH HOH A . C 3 HOH 105 306 105 HOH HOH A . C 3 HOH 106 307 106 HOH HOH A . C 3 HOH 107 308 107 HOH HOH A . C 3 HOH 108 309 108 HOH HOH A . C 3 HOH 109 310 109 HOH HOH A . C 3 HOH 110 311 110 HOH HOH A . C 3 HOH 111 312 111 HOH HOH A . C 3 HOH 112 313 112 HOH HOH A . C 3 HOH 113 314 113 HOH HOH A . C 3 HOH 114 315 114 HOH HOH A . C 3 HOH 115 316 115 HOH HOH A . C 3 HOH 116 317 116 HOH HOH A . C 3 HOH 117 318 117 HOH HOH A . C 3 HOH 118 319 118 HOH HOH A . C 3 HOH 119 320 119 HOH HOH A . C 3 HOH 120 321 120 HOH HOH A . C 3 HOH 121 322 121 HOH HOH A . C 3 HOH 122 323 122 HOH HOH A . C 3 HOH 123 324 123 HOH HOH A . C 3 HOH 124 325 124 HOH HOH A . C 3 HOH 125 326 125 HOH HOH A . C 3 HOH 126 327 126 HOH HOH A . C 3 HOH 127 328 127 HOH HOH A . C 3 HOH 128 329 128 HOH HOH A . C 3 HOH 129 330 129 HOH HOH A . C 3 HOH 130 331 130 HOH HOH A . C 3 HOH 131 332 131 HOH HOH A . C 3 HOH 132 333 132 HOH HOH A . C 3 HOH 133 334 133 HOH HOH A . C 3 HOH 134 335 134 HOH HOH A . C 3 HOH 135 336 135 HOH HOH A . C 3 HOH 136 337 136 HOH HOH A . C 3 HOH 137 338 137 HOH HOH A . C 3 HOH 138 339 138 HOH HOH A . C 3 HOH 139 340 139 HOH HOH A . C 3 HOH 140 341 140 HOH HOH A . C 3 HOH 141 342 141 HOH HOH A . C 3 HOH 142 343 142 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 30 A MSE 27 ? MET SELENOMETHIONINE 2 A MSE 34 A MSE 31 ? MET SELENOMETHIONINE 3 A MSE 45 A MSE 42 ? MET SELENOMETHIONINE 4 A MSE 55 A MSE 52 ? MET SELENOMETHIONINE 5 A MSE 127 A MSE 124 ? MET SELENOMETHIONINE 6 A MSE 134 A MSE 131 ? MET SELENOMETHIONINE 7 A MSE 153 A MSE 150 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5900 ? 1 MORE -43.6 ? 1 'SSA (A^2)' 13690 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 43.1970000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 286 ? C HOH . 2 1 A HOH 342 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-25 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 28.7941 20.8937 22.8327 -0.0855 -0.0766 -0.0743 -0.0044 -0.0521 0.0107 5.6368 1.9477 11.1979 -0.0487 -6.4319 -0.9280 -0.1328 0.0160 0.2256 0.1154 0.1242 0.0041 -0.1113 -0.2850 0.0086 'X-RAY DIFFRACTION' 2 ? refined 6.2192 30.3322 30.0672 -0.1113 -0.0854 -0.0329 -0.0056 -0.0357 0.0271 5.1725 2.3664 3.9984 1.2373 -2.3614 0.2687 -0.0937 0.0654 0.0642 -0.1900 0.0665 0.0912 -0.1485 -0.1511 0.0272 'X-RAY DIFFRACTION' 3 ? refined 24.7760 28.5663 37.7967 0.0226 0.0206 0.0054 0.0297 -0.0666 -0.0281 17.3069 0.0608 2.8986 0.9291 -4.9080 -0.3920 -0.2421 -0.5449 0.7257 0.0799 0.3126 -0.0707 0.2059 0.1366 -0.0705 'X-RAY DIFFRACTION' 4 ? refined 27.4731 37.8468 21.0356 -0.0573 -0.1655 0.0164 -0.0096 -0.0208 0.0232 8.7764 2.0207 4.6672 -0.9485 5.0470 0.1590 0.0549 0.2712 0.3255 -0.1319 -0.0419 -0.5277 0.0336 0.2562 -0.0130 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 12 A 15 A 46 A 49 ? 'X-RAY DIFFRACTION' ? 2 2 A 47 A 50 A 112 A 115 ? 'X-RAY DIFFRACTION' ? 3 3 A 113 A 116 A 135 A 138 ? 'X-RAY DIFFRACTION' ? 4 4 A 136 A 139 A 159 A 162 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-3000 'data reduction' . ? 3 HKL-3000 'data scaling' . ? 4 HKL-3000 phasing . ? 5 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 12 ? CG ? A ARG 15 CG 2 1 Y 1 A ARG 12 ? CD ? A ARG 15 CD 3 1 Y 1 A ARG 12 ? NE ? A ARG 15 NE 4 1 Y 1 A ARG 12 ? CZ ? A ARG 15 CZ 5 1 Y 1 A ARG 12 ? NH1 ? A ARG 15 NH1 6 1 Y 1 A ARG 12 ? NH2 ? A ARG 15 NH2 7 1 Y 1 A THR 43 ? OG1 ? A THR 46 OG1 8 1 Y 1 A THR 43 ? CG2 ? A THR 46 CG2 9 1 Y 1 A ASP 101 ? CG ? A ASP 104 CG 10 1 Y 1 A ASP 101 ? OD1 ? A ASP 104 OD1 11 1 Y 1 A ASP 101 ? OD2 ? A ASP 104 OD2 12 1 Y 1 A GLN 102 ? CG ? A GLN 105 CG 13 1 Y 1 A GLN 102 ? CD ? A GLN 105 CD 14 1 Y 1 A GLN 102 ? OE1 ? A GLN 105 OE1 15 1 Y 1 A GLN 102 ? NE2 ? A GLN 105 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MSE 1 ? A MSE 4 5 1 Y 1 A ALA 2 ? A ALA 5 6 1 Y 1 A GLU 3 ? A GLU 6 7 1 Y 1 A SER 4 ? A SER 7 8 1 Y 1 A THR 5 ? A THR 8 9 1 Y 1 A ASP 6 ? A ASP 9 10 1 Y 1 A GLN 7 ? A GLN 10 11 1 Y 1 A THR 8 ? A THR 11 12 1 Y 1 A GLU 9 ? A GLU 12 13 1 Y 1 A GLN 10 ? A GLN 13 14 1 Y 1 A LEU 11 ? A LEU 14 15 1 Y 1 A SER 99 ? A SER 102 16 1 Y 1 A ASP 100 ? A ASP 103 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 water HOH #