HEADER HYDROLASE 14-MAR-08 3CK1 TITLE CRYSTAL STRUCTURE OF A PUTATIVE THIOESTERASE (REUT_A2179) FROM TITLE 2 RALSTONIA EUTROPHA JMP134 AT 1.74 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE THIOESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA EUTROPHA; SOURCE 3 ORGANISM_TAXID: 264198; SOURCE 4 STRAIN: JMP134; SOURCE 5 GENE: YP_296387.1, REUT_A2179; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE THIOESTERASE, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3CK1 1 REMARK SEQADV REVDAT 6 24-JUL-19 3CK1 1 REMARK LINK REVDAT 5 25-OCT-17 3CK1 1 REMARK REVDAT 4 13-JUL-11 3CK1 1 VERSN REVDAT 3 28-JUL-10 3CK1 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3CK1 1 VERSN REVDAT 1 25-MAR-08 3CK1 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE THIOESTERASE (YP_296387.1) JRNL TITL 2 FROM RALSTONIA EUTROPHA JMP134 AT 1.74 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 44869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2264 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3071 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2233 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 291 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -0.77000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.367 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2596 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1756 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3559 ; 1.676 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4252 ; 1.182 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 340 ; 6.581 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;38.250 ;22.623 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 398 ;12.006 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;20.815 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 389 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3033 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 586 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1611 ; 1.973 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 635 ; 0.580 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2632 ; 3.126 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 985 ; 4.797 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 927 ; 6.591 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 142 6 REMARK 3 1 B 1 B 142 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1873 ; 0.490 ; 5.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 1873 ; 2.350 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2780 43.4136 7.0606 REMARK 3 T TENSOR REMARK 3 T11: -0.0602 T22: -0.0161 REMARK 3 T33: -0.0489 T12: 0.0120 REMARK 3 T13: 0.0150 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.9983 L22: 0.8873 REMARK 3 L33: 1.1581 L12: -0.3507 REMARK 3 L13: 0.1567 L23: 0.0327 REMARK 3 S TENSOR REMARK 3 S11: 0.0504 S12: 0.1319 S13: 0.0684 REMARK 3 S21: -0.0368 S22: -0.0562 S23: 0.0008 REMARK 3 S31: -0.1294 S32: -0.0211 S33: 0.0059 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 142 REMARK 3 ORIGIN FOR THE GROUP (A): -25.2817 25.3289 6.6804 REMARK 3 T TENSOR REMARK 3 T11: -0.0754 T22: -0.0134 REMARK 3 T33: -0.0270 T12: 0.0098 REMARK 3 T13: -0.0120 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 0.8691 L22: 0.8007 REMARK 3 L33: 1.3164 L12: -0.2498 REMARK 3 L13: -0.0287 L23: 0.0166 REMARK 3 S TENSOR REMARK 3 S11: 0.0564 S12: 0.0994 S13: -0.0964 REMARK 3 S21: -0.0155 S22: -0.0919 S23: 0.0526 REMARK 3 S31: 0.1137 S32: 0.0230 S33: 0.0355 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. CL IONS FROM CRYSTALLIZATION CONDITION AND GLYCEROL (GOL) REMARK 3 MOLECULES FROM CRYO SOLUTION ARE MODELED. REMARK 3 5. RESIDUES 0-5, 17-21 AND 117-121 IN SUBUNITS A AND B REMARK 3 ARE DISORDERED AND THE MODEL GEOMETRY IS POOR IN THESE REGIONS. REMARK 4 REMARK 4 3CK1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046869. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97916, 0.97959, 0.91837 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45201 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 29.298 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 4.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.81200 REMARK 200 R SYM FOR SHELL (I) : 0.81200 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 4.3M NACL, 0.1M HEPES PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.95300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 161.90600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 121.42950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 202.38250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.47650 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.95300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 161.90600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 202.38250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 121.42950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.47650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A REMARK 300 TETRAMER AS A SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -38.53350 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 66.74198 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 40.47650 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 221 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 299 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 143 REMARK 465 THR A 144 REMARK 465 GLY A 145 REMARK 465 SER A 146 REMARK 465 PRO A 147 REMARK 465 GLY A 148 REMARK 465 LEU A 149 REMARK 465 ALA B 143 REMARK 465 THR B 144 REMARK 465 GLY B 145 REMARK 465 SER B 146 REMARK 465 PRO B 147 REMARK 465 GLY B 148 REMARK 465 LEU B 149 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 CG SE CE REMARK 470 LYS A 85 CE NZ REMARK 470 ASP A 118 CG OD1 OD2 REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 GLU A 139 CD OE1 OE2 REMARK 470 MSE B 1 CG SE CE REMARK 470 ASP B 118 CG OD1 OD2 REMARK 470 LYS B 119 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 0 N GLY A 0 CA 0.154 REMARK 500 MSE A 1 N MSE A 1 CA 0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 1 CB - CA - C ANGL. DEV. = -16.1 DEGREES REMARK 500 ASP A 48 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 130 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 17 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 2 158.26 -49.24 REMARK 500 ALA A 121 130.12 -177.67 REMARK 500 ILE B 120 125.46 -38.34 REMARK 500 ALA B 121 132.14 -177.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 156 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 158 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 379793 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3CK1 A 1 149 UNP Q46Z90 Q46Z90_RALEJ 1 149 DBREF 3CK1 B 1 149 UNP Q46Z90 Q46Z90_RALEJ 1 149 SEQADV 3CK1 GLY A 0 UNP Q46Z90 EXPRESSION TAG SEQADV 3CK1 GLY B 0 UNP Q46Z90 EXPRESSION TAG SEQRES 1 A 150 GLY MSE THR ALA VAL PHE ARG ASN THR VAL LEU VAL ARG SEQRES 2 A 150 PHE LYS HIS CYS ASP ALA ALA GLY ILE VAL PHE TYR PRO SEQRES 3 A 150 ARG TYR PHE GLU MSE LEU ASN ASP PHE ILE GLU ASP TRP SEQRES 4 A 150 PHE ALA GLN ALA LEU ASP TRP PRO PHE ASP ALA MSE HIS SEQRES 5 A 150 GLY ALA GLY GLN ALA GLY VAL PRO THR ALA ASP LEU HIS SEQRES 6 A 150 CYS ARG PHE VAL ALA PRO SER ARG LEU GLY GLU THR LEU SEQRES 7 A 150 THR ARG GLU LEU ARG VAL VAL LYS LEU GLY GLN SER SER SEQRES 8 A 150 PHE THR VAL GLN VAL ARG PHE MSE GLY PRO ASP SER GLY SEQRES 9 A 150 LEU ARG LEU GLU VAL THR GLN ARG LEU VAL CYS VAL ASP SEQRES 10 A 150 THR ASP LYS ILE ALA PRO ARG PRO LEU PRO ASP PRO VAL SEQRES 11 A 150 ARG GLN ALA MSE ALA THR TYR VAL ASP GLU THR LEU ALA SEQRES 12 A 150 ALA THR GLY SER PRO GLY LEU SEQRES 1 B 150 GLY MSE THR ALA VAL PHE ARG ASN THR VAL LEU VAL ARG SEQRES 2 B 150 PHE LYS HIS CYS ASP ALA ALA GLY ILE VAL PHE TYR PRO SEQRES 3 B 150 ARG TYR PHE GLU MSE LEU ASN ASP PHE ILE GLU ASP TRP SEQRES 4 B 150 PHE ALA GLN ALA LEU ASP TRP PRO PHE ASP ALA MSE HIS SEQRES 5 B 150 GLY ALA GLY GLN ALA GLY VAL PRO THR ALA ASP LEU HIS SEQRES 6 B 150 CYS ARG PHE VAL ALA PRO SER ARG LEU GLY GLU THR LEU SEQRES 7 B 150 THR ARG GLU LEU ARG VAL VAL LYS LEU GLY GLN SER SER SEQRES 8 B 150 PHE THR VAL GLN VAL ARG PHE MSE GLY PRO ASP SER GLY SEQRES 9 B 150 LEU ARG LEU GLU VAL THR GLN ARG LEU VAL CYS VAL ASP SEQRES 10 B 150 THR ASP LYS ILE ALA PRO ARG PRO LEU PRO ASP PRO VAL SEQRES 11 B 150 ARG GLN ALA MSE ALA THR TYR VAL ASP GLU THR LEU ALA SEQRES 12 B 150 ALA THR GLY SER PRO GLY LEU MODRES 3CK1 MSE A 1 MET SELENOMETHIONINE MODRES 3CK1 MSE A 30 MET SELENOMETHIONINE MODRES 3CK1 MSE A 50 MET SELENOMETHIONINE MODRES 3CK1 MSE A 98 MET SELENOMETHIONINE MODRES 3CK1 MSE A 133 MET SELENOMETHIONINE MODRES 3CK1 MSE B 1 MET SELENOMETHIONINE MODRES 3CK1 MSE B 30 MET SELENOMETHIONINE MODRES 3CK1 MSE B 50 MET SELENOMETHIONINE MODRES 3CK1 MSE B 98 MET SELENOMETHIONINE MODRES 3CK1 MSE B 133 MET SELENOMETHIONINE HET MSE A 1 5 HET MSE A 30 8 HET MSE A 50 8 HET MSE A 98 16 HET MSE A 133 8 HET MSE B 1 5 HET MSE B 30 16 HET MSE B 50 8 HET MSE B 98 16 HET MSE B 133 16 HET CL A 150 1 HET CL A 151 1 HET CL A 152 1 HET CL A 153 1 HET GOL A 154 6 HET GOL A 155 6 HET GOL A 156 6 HET CL B 150 1 HET CL B 151 1 HET CL B 152 2 HET CL B 153 2 HET CL B 154 1 HET CL B 155 2 HET GOL B 156 6 HET GOL B 157 6 HET GOL B 158 6 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 CL 10(CL 1-) FORMUL 7 GOL 6(C3 H8 O3) FORMUL 19 HOH *291(H2 O) HELIX 1 1 ARG A 12 CYS A 16 5 5 HELIX 2 2 PHE A 23 ALA A 42 1 20 HELIX 3 3 PRO A 46 GLY A 52 1 7 HELIX 4 4 PRO A 126 THR A 135 1 10 HELIX 5 5 ARG B 12 CYS B 16 5 5 HELIX 6 6 PHE B 23 ALA B 42 1 20 HELIX 7 7 PRO B 46 GLY B 52 1 7 HELIX 8 8 PRO B 126 THR B 135 1 10 HELIX 9 9 TYR B 136 VAL B 137 5 2 HELIX 10 10 ASP B 138 ALA B 142 5 5 SHEET 1 A10 PHE A 5 LEU A 10 0 SHEET 2 A10 THR A 76 LEU A 86 -1 O ARG A 79 N ASN A 7 SHEET 3 A10 SER A 90 MSE A 98 -1 O MSE A 98 N THR A 78 SHEET 4 A10 LEU A 104 VAL A 113 -1 O ARG A 105 N PHE A 97 SHEET 5 A10 THR A 60 PHE A 67 -1 N ALA A 61 O ARG A 111 SHEET 6 A10 THR B 60 PHE B 67 -1 O CYS B 65 N LEU A 63 SHEET 7 A10 LEU B 104 VAL B 113 -1 O ARG B 111 N ALA B 61 SHEET 8 A10 SER B 90 MSE B 98 -1 N PHE B 97 O ARG B 105 SHEET 9 A10 THR B 76 LEU B 86 -1 N THR B 78 O MSE B 98 SHEET 10 A10 PHE B 5 LEU B 10 -1 N VAL B 9 O LEU B 77 SHEET 1 B 3 ALA A 56 GLY A 57 0 SHEET 2 B 3 VAL A 115 ASP A 116 -1 O VAL A 115 N GLY A 57 SHEET 3 B 3 ALA A 121 PRO A 122 -1 O ALA A 121 N ASP A 116 SHEET 1 C 3 ALA B 56 GLY B 57 0 SHEET 2 C 3 VAL B 115 ASP B 116 -1 O VAL B 115 N GLY B 57 SHEET 3 C 3 ALA B 121 PRO B 122 -1 O ALA B 121 N ASP B 116 LINK C GLY A 0 N MSE A 1 1555 1555 1.38 LINK C MSE A 1 N THR A 2 1555 1555 1.30 LINK C AGLU A 29 N MSE A 30 1555 1555 1.33 LINK C BGLU A 29 N MSE A 30 1555 1555 1.32 LINK C MSE A 30 N LEU A 31 1555 1555 1.32 LINK C ALA A 49 N MSE A 50 1555 1555 1.33 LINK C MSE A 50 N HIS A 51 1555 1555 1.33 LINK C PHE A 97 N AMSE A 98 1555 1555 1.34 LINK C PHE A 97 N BMSE A 98 1555 1555 1.33 LINK C AMSE A 98 N GLY A 99 1555 1555 1.32 LINK C BMSE A 98 N GLY A 99 1555 1555 1.31 LINK C ALA A 132 N MSE A 133 1555 1555 1.33 LINK C MSE A 133 N ALA A 134 1555 1555 1.32 LINK C GLY B 0 N MSE B 1 1555 1555 1.35 LINK C MSE B 1 N THR B 2 1555 1555 1.32 LINK C AGLU B 29 N AMSE B 30 1555 1555 1.34 LINK C BGLU B 29 N BMSE B 30 1555 1555 1.33 LINK C AMSE B 30 N LEU B 31 1555 1555 1.33 LINK C BMSE B 30 N LEU B 31 1555 1555 1.33 LINK C ALA B 49 N MSE B 50 1555 1555 1.32 LINK C MSE B 50 N HIS B 51 1555 1555 1.32 LINK C PHE B 97 N AMSE B 98 1555 1555 1.33 LINK C PHE B 97 N BMSE B 98 1555 1555 1.33 LINK C AMSE B 98 N GLY B 99 1555 1555 1.33 LINK C BMSE B 98 N GLY B 99 1555 1555 1.33 LINK C ALA B 132 N AMSE B 133 1555 1555 1.33 LINK C ALA B 132 N BMSE B 133 1555 1555 1.33 LINK C AMSE B 133 N ALA B 134 1555 1555 1.33 LINK C BMSE B 133 N ALA B 134 1555 1555 1.32 CISPEP 1 ASP A 118 LYS A 119 0 -15.57 CISPEP 2 ASP B 118 LYS B 119 0 -4.85 SITE 1 AC1 3 SER B 90 PHE B 91 THR B 92 SITE 1 AC2 1 GLN A 41 SITE 1 AC3 3 ARG A 6 THR B 2 GLU B 139 SITE 1 AC4 2 THR A 76 PRO A 100 SITE 1 AC5 5 GLY A 99 ASP A 101 SER A 102 GLY A 103 SITE 2 AC5 5 ARG A 105 SITE 1 AC6 3 GLN A 88 SER A 89 SER A 90 SITE 1 AC7 3 SER A 90 PHE A 91 THR A 92 SITE 1 AC8 6 GLY B 99 PRO B 100 ASP B 101 SER B 102 SITE 2 AC8 6 GLY B 103 ARG B 105 SITE 1 AC9 4 GLY B 87 GLN B 88 SER B 89 SER B 90 SITE 1 BC1 6 TYR A 24 PHE B 13 ASN B 32 HIS B 51 SITE 2 BC1 6 GLY B 57 PRO B 59 SITE 1 BC2 6 ASP A 17 ILE A 21 PHE A 23 TYR A 24 SITE 2 BC2 6 PRO B 59 THR B 60 SITE 1 BC3 7 PHE A 13 ASN A 32 PHE A 47 HIS A 51 SITE 2 BC3 7 GLY A 57 PRO A 59 TYR B 24 SITE 1 BC4 2 ASP B 44 PRO B 126 SITE 1 BC5 4 PHE A 67 ALA A 69 PRO A 70 THR B 60 SITE 1 BC6 5 PRO A 59 THR A 60 PHE B 67 ALA B 69 SITE 2 BC6 5 PRO B 70 CRYST1 77.067 77.067 242.859 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012976 0.007492 0.000000 0.00000 SCALE2 0.000000 0.014983 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004118 0.00000