HEADER BIOSYNTHETIC PROTEIN 16-MAR-08 3CKM TITLE LPOA (YRAM) C-DOMAIN FROM HAEMOPHILUS INFLUENZAE, A REGULATOR OF PBP1A COMPND MOL_ID: 1; COMPND 2 MOLECULE: YRAM (HI1655); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, UNP RESIDUES 256-573; COMPND 5 SYNONYM: LPOA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 71421; SOURCE 4 STRAIN: RD KW20; SOURCE 5 GENE: YRAM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI (DE3) PLACI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETBLUE-2 KEYWDS YRAM, PERIPLASMIC-BINDING PROTEIN, LIPOPROTEIN, UNLIGANDED, KEYWDS 2 BIOSYNTHETIC PROTEIN, PBP1A, TRANSPEPTIDASE, PEPTIDOGLYCAN EXPDTA X-RAY DIFFRACTION AUTHOR J.VIJAYALAKSHMI,M.A.SAPER REVDAT 6 08-NOV-17 3CKM 1 TITLE KEYWDS JRNL REMARK REVDAT 5 13-JUL-11 3CKM 1 VERSN REVDAT 4 13-APR-11 3CKM 1 HEADER TITLE REVDAT 3 24-FEB-09 3CKM 1 VERSN REVDAT 2 09-SEP-08 3CKM 1 JRNL REVDAT 1 13-MAY-08 3CKM 0 SPRSDE 13-MAY-08 3CKM 2H4A JRNL AUTH J.VIJAYALAKSHMI,B.J.AKERLEY,M.A.SAPER JRNL TITL STRUCTURE OF YRAM, A PROTEIN ESSENTIAL FOR GROWTH OF JRNL TITL 2 HAEMOPHILUS INFLUENZAE. JRNL REF PROTEINS V. 73 204 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18412262 JRNL DOI 10.1002/PROT.22033 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.SATHIYAMOORTHY,J.VIJAYALAKSHMI,B.TIRUPATI,L.FAN,M.A.SAPER REMARK 1 TITL STRUCTURAL ANALYSES OF THE HAEMOPHILUS INFLUENZAE REMARK 1 TITL 2 PEPTIDOGLYCAN SYNTHASE ACTIVATOR LPOA SUGGEST MULTIPLE REMARK 1 TITL 3 CONFORMATIONS IN SOLUTION. REMARK 1 REF J. BIOL. CHEM. V. 292 17626 2017 REMARK 1 REFN ESSN 1083-351X REMARK 1 PMID 28887305 REMARK 1 DOI 10.1074/JBC.M117.804997 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.4.0034 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 73215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 7201 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4815 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 513 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2433 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 353 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.766 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2503 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1609 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3421 ; 1.563 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3960 ; 1.636 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 5.310 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;36.779 ;26.050 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 400 ;11.622 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.455 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 386 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2866 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 468 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1590 ; 1.616 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 645 ; 0.898 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2564 ; 2.456 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 913 ; 3.530 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 853 ; 5.018 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4112 ; 1.598 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 354 ; 7.731 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4061 ; 5.238 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. FRIEDEL PAIRS WERE AVERAGED FOR REFINEMENT. RESIDUES REMARK 3 346-359, 428 (SIDE CHAIN), 429, 430 HAVE NO INTERPRETABLE REMARK 3 ELECTRON DENSITY. COORDINATES REPRESENT A HYPOTHETICAL MODEL. REMARK 4 REMARK 4 3CKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 165 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857,0.97843,0.96321 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : SI(111)MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.3D REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 143557 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 47.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.140 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.42800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE 2.06 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M LI SULFATE MONOHYDRATE, 2% W/V REMARK 280 PEG 8000 AND 0.05% BME, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.95350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.32200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.95350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.32200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 917 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 THE CHEMICAL IDENTITY OF BME A 583 IS UNKNOWN BUT MODELED AS BETA- REMARK 400 MERCAPTOETHANOL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 255 REMARK 465 VAL A 256 REMARK 465 ASP A 575 REMARK 465 HIS A 576 REMARK 465 HIS A 577 REMARK 465 HIS A 578 REMARK 465 HIS A 579 REMARK 465 HIS A 580 REMARK 465 HIS A 581 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 THR A 346 REMARK 475 PRO A 347 REMARK 475 ASN A 348 REMARK 475 SER A 349 REMARK 475 ASN A 429 REMARK 475 SER A 430 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 322 CD CE NZ REMARK 480 ALA A 351 CB REMARK 480 ASN A 428 CG OD1 ND2 REMARK 480 ARG A 540 NE CZ NH1 NH2 REMARK 480 VAL A 574 CG1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 349 CB - CA - C ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 354 14.49 59.24 REMARK 500 ASN A 429 -178.69 -56.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 582 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 583 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KCN RELATED DB: PDB REMARK 900 RELATED ID: 5VAT RELATED DB: PDB REMARK 900 RELATED ID: 5VBG RELATED DB: PDB DBREF 3CKM A 256 573 UNP P45299 Y1655_HAEIN 256 573 SEQADV 3CKM MET A 255 UNP P45299 EXPRESSION TAG SEQADV 3CKM VAL A 574 UNP P45299 EXPRESSION TAG SEQADV 3CKM ASP A 575 UNP P45299 EXPRESSION TAG SEQADV 3CKM HIS A 576 UNP P45299 EXPRESSION TAG SEQADV 3CKM HIS A 577 UNP P45299 EXPRESSION TAG SEQADV 3CKM HIS A 578 UNP P45299 EXPRESSION TAG SEQADV 3CKM HIS A 579 UNP P45299 EXPRESSION TAG SEQADV 3CKM HIS A 580 UNP P45299 EXPRESSION TAG SEQADV 3CKM HIS A 581 UNP P45299 EXPRESSION TAG SEQRES 1 A 327 MET VAL SER GLN ILE GLY LEU LEU LEU PRO LEU SER GLY SEQRES 2 A 327 ASP GLY GLN ILE LEU GLY THR THR ILE GLN SER GLY PHE SEQRES 3 A 327 ASN ASP ALA LYS GLY ASN SER THR ILE PRO VAL GLN VAL SEQRES 4 A 327 PHE ASP THR SER MSE ASN SER VAL GLN ASP ILE ILE ALA SEQRES 5 A 327 GLN ALA LYS GLN ALA GLY ILE LYS THR LEU VAL GLY PRO SEQRES 6 A 327 LEU LEU LYS GLN ASN LEU ASP VAL ILE LEU ALA ASP PRO SEQRES 7 A 327 ALA GLN ILE GLN GLY MSE ASP VAL LEU ALA LEU ASN ALA SEQRES 8 A 327 THR PRO ASN SER ARG ALA ILE PRO GLN LEU CYS TYR TYR SEQRES 9 A 327 GLY LEU SER PRO GLU ASP GLU ALA GLU SER ALA ALA ASN SEQRES 10 A 327 LYS MSE TRP ASN ASP GLY VAL ARG ASN PRO LEU VAL ALA SEQRES 11 A 327 MSE PRO GLN ASN ASP LEU GLY GLN ARG VAL GLY ASN ALA SEQRES 12 A 327 PHE ASN VAL ARG TRP GLN GLN LEU ALA GLY THR ASP ALA SEQRES 13 A 327 ASN ILE ARG TYR TYR ASN LEU PRO ALA ASP VAL THR TYR SEQRES 14 A 327 PHE VAL GLN GLU ASN ASN SER ASN THR THR ALA LEU TYR SEQRES 15 A 327 ALA VAL ALA SER PRO THR GLU LEU ALA GLU MSE LYS GLY SEQRES 16 A 327 TYR LEU THR ASN ILE VAL PRO ASN LEU ALA ILE TYR ALA SEQRES 17 A 327 SER SER ARG ALA SER ALA SER ALA THR ASN THR ASN THR SEQRES 18 A 327 ASP PHE ILE ALA GLN MSE ASN GLY VAL GLN PHE SER ASP SEQRES 19 A 327 ILE PRO PHE PHE LYS ASP THR ASN SER PRO GLN TYR GLN SEQRES 20 A 327 LYS LEU ALA LYS SER THR GLY GLY GLU TYR GLN LEU MSE SEQRES 21 A 327 ARG LEU TYR ALA MSE GLY ALA ASP ALA TRP LEU LEU ILE SEQRES 22 A 327 ASN GLN PHE ASN GLU LEU ARG GLN VAL PRO GLY TYR ARG SEQRES 23 A 327 LEU SER GLY LEU THR GLY ILE LEU SER ALA ASP THR ASN SEQRES 24 A 327 CYS ASN VAL GLU ARG ASP MSE THR TRP TYR GLN TYR GLN SEQRES 25 A 327 ASP GLY ALA ILE VAL PRO VAL VAL ASP HIS HIS HIS HIS SEQRES 26 A 327 HIS HIS MODRES 3CKM MSE A 298 MET SELENOMETHIONINE MODRES 3CKM MSE A 338 MET SELENOMETHIONINE MODRES 3CKM MSE A 373 MET SELENOMETHIONINE MODRES 3CKM MSE A 385 MET SELENOMETHIONINE MODRES 3CKM MSE A 447 MET SELENOMETHIONINE MODRES 3CKM MSE A 481 MET SELENOMETHIONINE MODRES 3CKM MSE A 514 MET SELENOMETHIONINE MODRES 3CKM MSE A 519 MET SELENOMETHIONINE MODRES 3CKM MSE A 560 MET SELENOMETHIONINE HET MSE A 298 8 HET MSE A 338 8 HET MSE A 373 8 HET MSE A 385 8 HET MSE A 447 8 HET MSE A 481 8 HET MSE A 514 8 HET MSE A 519 8 HET MSE A 560 8 HET SO4 A 582 5 HET BME A 583 4 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM BME BETA-MERCAPTOETHANOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 SO4 O4 S 2- FORMUL 3 BME C2 H6 O S FORMUL 4 HOH *353(H2 O) HELIX 1 1 GLY A 269 GLY A 285 1 17 HELIX 2 2 SER A 300 ALA A 311 1 12 HELIX 3 3 LEU A 321 ASP A 331 1 11 HELIX 4 4 PRO A 332 GLN A 336 5 5 HELIX 5 5 SER A 361 ASP A 376 1 16 HELIX 6 6 ASN A 388 GLY A 407 1 20 HELIX 7 7 ALA A 419 ASN A 428 1 10 HELIX 8 8 SER A 440 THR A 452 1 13 HELIX 9 9 SER A 464 SER A 467 5 4 HELIX 10 10 ALA A 468 THR A 473 1 6 HELIX 11 11 ASN A 474 MSE A 481 1 8 HELIX 12 12 ILE A 489 ASP A 494 5 6 HELIX 13 13 SER A 497 THR A 507 1 11 HELIX 14 14 GLU A 510 GLN A 529 1 20 HELIX 15 15 GLN A 529 VAL A 536 1 8 SHEET 1 A 5 VAL A 291 ASP A 295 0 SHEET 2 A 5 ILE A 259 LEU A 263 1 N LEU A 261 O PHE A 294 SHEET 3 A 5 THR A 315 VAL A 317 1 O VAL A 317 N LEU A 262 SHEET 4 A 5 ASP A 339 ALA A 342 1 O ASP A 339 N LEU A 316 SHEET 5 A 5 LEU A 355 TYR A 357 1 O CYS A 356 N VAL A 340 SHEET 1 B 7 ASN A 411 TYR A 415 0 SHEET 2 B 7 LEU A 382 PRO A 386 1 N VAL A 383 O ARG A 413 SHEET 3 B 7 ALA A 434 ALA A 437 1 O TYR A 436 N ALA A 384 SHEET 4 B 7 ALA A 459 ALA A 462 1 O TYR A 461 N LEU A 435 SHEET 5 B 7 GLN A 485 ASP A 488 1 O GLN A 485 N ILE A 460 SHEET 6 B 7 THR A 561 GLN A 566 -1 O TYR A 563 N PHE A 486 SHEET 7 B 7 ALA A 569 PRO A 572 -1 O ALA A 569 N GLN A 566 SHEET 1 C 3 LEU A 541 GLY A 543 0 SHEET 2 C 3 GLY A 546 ALA A 550 -1 O LEU A 548 N LEU A 541 SHEET 3 C 3 VAL A 556 ASP A 559 -1 O GLU A 557 N SER A 549 SSBOND 1 CYS A 356 CYS A 554 1555 1555 2.05 LINK C SER A 297 N MSE A 298 1555 1555 1.33 LINK C MSE A 298 N ASN A 299 1555 1555 1.32 LINK C GLY A 337 N MSE A 338 1555 1555 1.33 LINK C MSE A 338 N ASP A 339 1555 1555 1.33 LINK C LYS A 372 N MSE A 373 1555 1555 1.34 LINK C MSE A 373 N TRP A 374 1555 1555 1.32 LINK C ALA A 384 N MSE A 385 1555 1555 1.33 LINK C MSE A 385 N PRO A 386 1555 1555 1.34 LINK C GLU A 446 N MSE A 447 1555 1555 1.33 LINK C MSE A 447 N LYS A 448 1555 1555 1.32 LINK C GLN A 480 N MSE A 481 1555 1555 1.33 LINK C MSE A 481 N ASN A 482 1555 1555 1.33 LINK C LEU A 513 N MSE A 514 1555 1555 1.32 LINK C MSE A 514 N ARG A 515 1555 1555 1.34 LINK C ALA A 518 N MSE A 519 1555 1555 1.32 LINK C MSE A 519 N GLY A 520 1555 1555 1.33 LINK C AASP A 559 N MSE A 560 1555 1555 1.33 LINK C BASP A 559 N MSE A 560 1555 1555 1.32 LINK C MSE A 560 N THR A 561 1555 1555 1.32 CISPEP 1 GLY A 318 PRO A 319 0 2.52 SITE 1 AC1 10 ALA A 468 SER A 469 GLU A 510 TYR A 511 SITE 2 AC1 10 GLN A 512 HOH A 606 HOH A 614 HOH A 623 SITE 3 AC1 10 HOH A 666 HOH A 749 SITE 1 AC2 4 SER A 467 PHE A 486 ASP A 488 PHE A 492 CRYST1 109.907 50.644 63.676 90.00 106.73 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009099 0.000000 0.002735 0.00000 SCALE2 0.000000 0.019746 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016399 0.00000