HEADER UNKNOWN FUNCTION 16-MAR-08 3CKN TITLE CRYSTAL STRUCTURE OF A MYCOBACTERIAL PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM PARATUBERCULOSIS; SOURCE 3 STRAIN: K-10 KEYWDS MYCOBACTERIA, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Z.MARLAND,J.ROSSJOHN REVDAT 6 21-FEB-24 3CKN 1 REMARK LINK REVDAT 5 13-JUL-11 3CKN 1 VERSN REVDAT 4 24-FEB-09 3CKN 1 VERSN REVDAT 3 18-NOV-08 3CKN 1 JRNL REVDAT 2 05-AUG-08 3CKN 1 REMARK REVDAT 1 29-JUL-08 3CKN 0 JRNL AUTH Z.FULTON,A.MCALISTER,M.C.WILCE,R.BRAMMANANTH, JRNL AUTH 2 L.ZAKER-TABRIZI,M.A.PERUGINI,S.P.BOTTOMLEY,R.L.COPPEL, JRNL AUTH 3 P.K.CRELLIN,J.ROSSJOHN,T.BEDDOE JRNL TITL CRYSTAL STRUCTURE OF A UDP-GLUCOSE-SPECIFIC JRNL TITL 2 GLYCOSYLTRANSFERASE FROM A MYCOBACTERIUM SPECIES. JRNL REF J.BIOL.CHEM. V. 283 27881 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18667419 JRNL DOI 10.1074/JBC.M801853200 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 19867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 667 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1445 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2231 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.211 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2339 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3218 ; 1.158 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 310 ; 5.217 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;31.961 ;22.874 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 350 ;15.321 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;11.251 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 381 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1772 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1005 ; 0.186 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1564 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 94 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.187 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1544 ; 0.459 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2440 ; 0.767 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 892 ; 1.115 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 772 ; 1.843 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 27 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6767 7.3714 22.6807 REMARK 3 T TENSOR REMARK 3 T11: 1.4838 T22: 0.0016 REMARK 3 T33: 0.6307 T12: 0.6154 REMARK 3 T13: 0.1685 T23: 0.4476 REMARK 3 L TENSOR REMARK 3 L11: 3.2726 L22: 5.1588 REMARK 3 L33: 11.2647 L12: 4.1089 REMARK 3 L13: 6.0717 L23: 7.6232 REMARK 3 S TENSOR REMARK 3 S11: -1.0693 S12: 0.0272 S13: -0.3562 REMARK 3 S21: 2.2389 S22: 1.7072 S23: -0.9217 REMARK 3 S31: 1.9830 S32: 2.5803 S33: -0.6379 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 48 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4874 14.1886 34.8279 REMARK 3 T TENSOR REMARK 3 T11: 1.5868 T22: 0.5623 REMARK 3 T33: 0.4074 T12: 0.3994 REMARK 3 T13: 0.3167 T23: 0.3111 REMARK 3 L TENSOR REMARK 3 L11: 1.7646 L22: 3.4537 REMARK 3 L33: 4.6546 L12: -2.4687 REMARK 3 L13: 2.8659 L23: -4.0094 REMARK 3 S TENSOR REMARK 3 S11: -0.7506 S12: -2.2656 S13: -0.4942 REMARK 3 S21: 2.1393 S22: 1.5726 S23: -0.8375 REMARK 3 S31: 1.4751 S32: 2.1726 S33: -0.8221 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 154 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0816 26.6604 25.1732 REMARK 3 T TENSOR REMARK 3 T11: 0.6203 T22: 0.1764 REMARK 3 T33: 0.5025 T12: -0.0530 REMARK 3 T13: 0.4261 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.9676 L22: 5.0426 REMARK 3 L33: 3.7717 L12: -1.3530 REMARK 3 L13: -1.2864 L23: 0.5362 REMARK 3 S TENSOR REMARK 3 S11: -0.4398 S12: -0.4850 S13: -0.2947 REMARK 3 S21: 1.3704 S22: 0.1386 S23: 1.3522 REMARK 3 S31: 0.5944 S32: -0.5206 S33: 0.3012 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 155 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): 21.3758 16.5832 20.2926 REMARK 3 T TENSOR REMARK 3 T11: 0.7778 T22: 0.1846 REMARK 3 T33: 0.3592 T12: 0.1716 REMARK 3 T13: 0.1320 T23: 0.1087 REMARK 3 L TENSOR REMARK 3 L11: 2.4290 L22: 4.5991 REMARK 3 L33: 7.2972 L12: -0.7652 REMARK 3 L13: -1.8254 L23: -0.3990 REMARK 3 S TENSOR REMARK 3 S11: -0.4089 S12: -0.5716 S13: -0.5388 REMARK 3 S21: 1.3705 S22: 0.2768 S23: 0.3554 REMARK 3 S31: 1.3120 S32: 0.5152 S33: 0.1321 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 245 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4370 25.0310 14.7774 REMARK 3 T TENSOR REMARK 3 T11: 0.3614 T22: 0.1265 REMARK 3 T33: 0.2357 T12: 0.0404 REMARK 3 T13: -0.0129 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 2.1772 L22: 3.5768 REMARK 3 L33: 4.2101 L12: -0.9736 REMARK 3 L13: -1.2097 L23: 1.4513 REMARK 3 S TENSOR REMARK 3 S11: -0.2529 S12: -0.4434 S13: -0.0854 REMARK 3 S21: 0.7830 S22: 0.1904 S23: 0.1110 REMARK 3 S31: 0.4900 S32: 0.4311 S33: 0.0624 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 246 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): 28.1132 21.0031 21.3164 REMARK 3 T TENSOR REMARK 3 T11: 0.6970 T22: 0.2728 REMARK 3 T33: 0.1723 T12: 0.2668 REMARK 3 T13: -0.1037 T23: 0.0645 REMARK 3 L TENSOR REMARK 3 L11: 10.0203 L22: 8.0970 REMARK 3 L33: 5.4768 L12: 4.1263 REMARK 3 L13: -3.3336 L23: -0.7586 REMARK 3 S TENSOR REMARK 3 S11: -0.4111 S12: -0.7592 S13: -0.2336 REMARK 3 S21: 1.4474 S22: 0.3418 S23: -0.2714 REMARK 3 S31: 0.7321 S32: 1.2713 S33: 0.0693 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 259 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2528 14.9474 11.0828 REMARK 3 T TENSOR REMARK 3 T11: 0.6594 T22: 0.1885 REMARK 3 T33: 0.9087 T12: -0.3157 REMARK 3 T13: 0.2242 T23: 0.1076 REMARK 3 L TENSOR REMARK 3 L11: 4.8806 L22: 6.8788 REMARK 3 L33: 59.7856 L12: -5.7942 REMARK 3 L13: 17.0818 L23: -20.2794 REMARK 3 S TENSOR REMARK 3 S11: 0.2667 S12: 0.5686 S13: -1.2682 REMARK 3 S21: 0.5387 S22: 0.1468 S23: 1.8806 REMARK 3 S31: 1.5090 S32: -1.0818 S33: -0.4135 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 270 A 307 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0947 27.6213 -1.7761 REMARK 3 T TENSOR REMARK 3 T11: 0.1695 T22: 0.1506 REMARK 3 T33: 0.3290 T12: 0.0043 REMARK 3 T13: -0.0350 T23: -0.0446 REMARK 3 L TENSOR REMARK 3 L11: 4.2271 L22: 3.6730 REMARK 3 L33: 5.4278 L12: -0.6117 REMARK 3 L13: 0.9444 L23: 1.0486 REMARK 3 S TENSOR REMARK 3 S11: 0.1154 S12: 0.2784 S13: -0.2385 REMARK 3 S21: -0.0624 S22: -0.1721 S23: 0.4450 REMARK 3 S31: 0.0826 S32: -0.3489 S33: 0.0568 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 308 A 317 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8736 30.6916 -3.8491 REMARK 3 T TENSOR REMARK 3 T11: 0.1723 T22: 0.2767 REMARK 3 T33: 0.4269 T12: 0.0365 REMARK 3 T13: -0.1030 T23: -0.0812 REMARK 3 L TENSOR REMARK 3 L11: 6.6031 L22: 5.5132 REMARK 3 L33: 9.3635 L12: 3.9078 REMARK 3 L13: 6.4325 L23: 5.8294 REMARK 3 S TENSOR REMARK 3 S11: 0.1512 S12: 0.2663 S13: 0.0188 REMARK 3 S21: -0.1112 S22: -0.3102 S23: 0.6745 REMARK 3 S31: -0.3618 S32: -0.5749 S33: 0.1590 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 318 A 329 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9761 41.2228 21.7786 REMARK 3 T TENSOR REMARK 3 T11: 0.5268 T22: 0.1749 REMARK 3 T33: 0.3612 T12: -0.0298 REMARK 3 T13: 0.0411 T23: -0.1156 REMARK 3 L TENSOR REMARK 3 L11: 7.4419 L22: 8.3229 REMARK 3 L33: 9.6637 L12: -1.2148 REMARK 3 L13: -0.2393 L23: 1.3737 REMARK 3 S TENSOR REMARK 3 S11: -0.1065 S12: -0.9705 S13: 0.4060 REMARK 3 S21: 1.2699 S22: 0.2274 S23: 0.0089 REMARK 3 S31: -0.3892 S32: 0.4691 S33: -0.1209 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CKN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046891. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0053 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19867 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.55400 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY REFINEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M AMMONIUM SULPHATE, 0.1 M HEPES PH REMARK 280 7.0, 20 MM MANGANESE CHLORIDE, 1 MM SODIUM THIOSULPHATE, 100 MM REMARK 280 URIDINE-5 -DIPHOSPHATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.12150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.43100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.43100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.06075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.43100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.43100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.18225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.43100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.43100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.06075 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.43100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.43100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 78.18225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.12150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 ASP A 5 REMARK 465 LEU A 6 REMARK 465 VAL A 7 REMARK 465 ALA A 8 REMARK 465 GLY A 9 REMARK 465 GLU A 10 REMARK 465 LEU A 11 REMARK 465 ALA A 12 REMARK 465 GLY A 13 REMARK 465 ASP A 14 REMARK 465 LEU A 174 REMARK 465 ASN A 175 REMARK 465 VAL A 176 REMARK 465 GLY A 177 REMARK 465 ASP A 178 REMARK 465 ALA A 179 REMARK 465 GLY A 180 REMARK 465 GLY A 181 REMARK 465 GLY A 182 REMARK 465 ALA A 183 REMARK 465 GLY A 184 REMARK 465 ALA A 185 REMARK 465 THR A 186 REMARK 465 GLY A 187 REMARK 465 GLY A 188 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 20 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 29 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 ARG A 264 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 265 CG OD1 ND2 REMARK 470 GLN A 306 CG CD OE1 NE2 REMARK 470 ARG A 329 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 18 97.86 -161.29 REMARK 500 ASP A 28 34.35 -79.42 REMARK 500 ARG A 29 -2.22 63.68 REMARK 500 SER A 71 -60.85 -27.46 REMARK 500 SER A 86 35.92 -96.43 REMARK 500 SER A 86 35.66 -96.40 REMARK 500 ASP A 90 -147.23 -100.33 REMARK 500 LEU A 110 72.61 -157.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 330 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 141 OD2 REMARK 620 2 UDP A 332 O1A 84.9 REMARK 620 3 UDP A 332 O2B 163.1 82.7 REMARK 620 4 HOH A 367 O 105.9 123.2 90.5 REMARK 620 5 HOH A 368 O 79.8 65.8 84.7 169.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A 332 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CKJ RELATED DB: PDB REMARK 900 RELATED ID: 3CKO RELATED DB: PDB REMARK 900 RELATED ID: 3CKQ RELATED DB: PDB REMARK 900 RELATED ID: 3CKV RELATED DB: PDB DBREF 3CKN A 1 329 UNP Q73WU1 Q73WU1_MYCPA 1 329 SEQRES 1 A 329 MET THR THR SER ASP LEU VAL ALA GLY GLU LEU ALA GLY SEQRES 2 A 329 ASP GLY LEU ARG ASP THR ARG PRO GLY ASP THR TRP LEU SEQRES 3 A 329 ALA ASP ARG SER TRP ASN ARG PRO GLY TRP THR VAL ALA SEQRES 4 A 329 GLU LEU GLU ALA ALA LYS ALA GLY ARG THR ILE SER VAL SEQRES 5 A 329 VAL LEU PRO ALA LEU ASP GLU GLU ASP THR ILE GLY SER SEQRES 6 A 329 VAL ILE ASP SER ILE SER PRO LEU VAL ASP GLY LEU VAL SEQRES 7 A 329 ASP GLU LEU ILE VAL LEU ASP SER GLY SER THR ASP ASP SEQRES 8 A 329 THR GLU ILE ARG ALA VAL ALA ALA GLY ALA ARG VAL VAL SEQRES 9 A 329 SER ARG GLU GLN ALA LEU PRO GLU VAL PRO ILE ARG PRO SEQRES 10 A 329 GLY LYS GLY GLU ALA LEU TRP ARG SER LEU ALA ALA SER SEQRES 11 A 329 ARG GLY ASP ILE VAL VAL PHE VAL ASP SER ASP LEU ILE SEQRES 12 A 329 ASN PRO HIS PRO MET PHE VAL PRO TRP LEU VAL GLY PRO SEQRES 13 A 329 LEU LEU THR GLY ASP GLY VAL HIS LEU VAL LYS SER PHE SEQRES 14 A 329 TYR ARG ARG PRO LEU ASN VAL GLY ASP ALA GLY GLY GLY SEQRES 15 A 329 ALA GLY ALA THR GLY GLY GLY ARG VAL THR GLU LEU VAL SEQRES 16 A 329 ALA ARG PRO LEU LEU ALA ALA LEU ARG PRO GLU LEU GLY SEQRES 17 A 329 CYS ILE LEU GLN PRO LEU GLY GLY GLU TYR ALA ALA THR SEQRES 18 A 329 ARG GLU LEU LEU THR SER VAL PRO PHE ALA PRO GLY TYR SEQRES 19 A 329 GLY VAL GLU ILE GLY LEU LEU VAL ASP THR PHE ASP ARG SEQRES 20 A 329 LEU GLY LEU ASP ALA ILE ALA GLN VAL ASN LEU GLY VAL SEQRES 21 A 329 ARG GLU HIS ARG ASN ARG PRO LEU ALA GLU LEU GLY ALA SEQRES 22 A 329 MET SER ARG GLN VAL ILE ALA THR LEU LEU SER ARG CYS SEQRES 23 A 329 GLY ILE PRO ASP SER GLY VAL GLY LEU THR GLN PHE VAL SEQRES 24 A 329 ALA ASP GLY PRO GLU GLY GLN SER TYR THR GLN HIS THR SEQRES 25 A 329 TRP PRO VAL SER LEU ALA ASP ARG PRO PRO MET GLN ALA SEQRES 26 A 329 ILE ARG PRO ARG HET MN A 330 1 HET SO4 A 331 5 HET UDP A 332 25 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM UDP URIDINE-5'-DIPHOSPHATE FORMUL 2 MN MN 2+ FORMUL 3 SO4 O4 S 2- FORMUL 4 UDP C9 H14 N2 O12 P2 FORMUL 5 HOH *36(H2 O) HELIX 1 1 THR A 37 ALA A 44 1 8 HELIX 2 2 THR A 62 SER A 71 1 10 HELIX 3 3 PRO A 72 VAL A 74 5 3 HELIX 4 4 ASP A 91 ALA A 99 1 9 HELIX 5 5 ARG A 106 LEU A 110 1 5 HELIX 6 6 GLY A 118 SER A 130 1 13 HELIX 7 7 MET A 148 GLY A 160 1 13 HELIX 8 8 GLY A 189 VAL A 195 1 7 HELIX 9 9 VAL A 195 ARG A 204 1 10 HELIX 10 10 PRO A 205 ILE A 210 5 6 HELIX 11 11 ARG A 222 THR A 226 1 5 HELIX 12 12 PRO A 232 TYR A 234 5 3 HELIX 13 13 GLY A 235 GLY A 249 1 15 HELIX 14 14 PRO A 267 ALA A 269 5 3 HELIX 15 15 GLU A 270 CYS A 286 1 17 HELIX 16 16 PRO A 322 ILE A 326 5 5 SHEET 1 A 9 TRP A 31 ASN A 32 0 SHEET 2 A 9 THR A 24 TRP A 25 -1 N THR A 24 O ASN A 32 SHEET 3 A 9 ILE A 253 VAL A 260 -1 O GLN A 255 N TRP A 25 SHEET 4 A 9 LEU A 165 ARG A 171 1 N LYS A 167 O ALA A 254 SHEET 5 A 9 TYR A 218 THR A 221 -1 O ALA A 219 N VAL A 166 SHEET 6 A 9 ILE A 134 PHE A 137 -1 N PHE A 137 O TYR A 218 SHEET 7 A 9 ILE A 50 ALA A 56 1 N SER A 51 O ILE A 134 SHEET 8 A 9 GLU A 80 ASP A 85 1 O ILE A 82 N VAL A 52 SHEET 9 A 9 ARG A 102 SER A 105 1 O VAL A 104 N VAL A 83 SHEET 1 B 2 THR A 296 ALA A 300 0 SHEET 2 B 2 TYR A 308 THR A 312 -1 O HIS A 311 N GLN A 297 LINK OD2 ASP A 141 MN MN A 330 1555 1555 2.19 LINK MN MN A 330 O1A UDP A 332 1555 1555 2.32 LINK MN MN A 330 O2B UDP A 332 1555 1555 2.20 LINK MN MN A 330 O HOH A 367 1555 1555 2.10 LINK MN MN A 330 O HOH A 368 1555 1555 1.84 SITE 1 AC1 4 ASP A 141 HIS A 263 HOH A 367 HOH A 368 SITE 1 AC2 7 ARG A 17 PRO A 114 ARG A 116 TYR A 308 SITE 2 AC2 7 THR A 309 GLN A 310 ARG A 320 SITE 1 AC3 15 PRO A 55 ALA A 56 LEU A 57 GLU A 59 SITE 2 AC3 15 SER A 86 GLY A 118 LYS A 119 ASP A 139 SITE 3 AC3 15 SER A 140 ASP A 141 TYR A 234 HIS A 263 SITE 4 AC3 15 ARG A 266 HOH A 367 HOH A 368 CRYST1 86.862 86.862 104.243 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011513 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009593 0.00000