HEADER UNKNOWN FUNCTION 16-MAR-08 3CKQ TITLE CRYSTAL STRUCTURE OF A MYCOBACTERIAL PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM PARATUBERCULOSIS; SOURCE 3 STRAIN: K-10 KEYWDS MYCOBACTERIA, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Z.MARLAND,J.ROSSJOHN REVDAT 6 21-FEB-24 3CKQ 1 REMARK LINK REVDAT 5 13-JUL-11 3CKQ 1 VERSN REVDAT 4 24-FEB-09 3CKQ 1 VERSN REVDAT 3 18-NOV-08 3CKQ 1 JRNL REVDAT 2 05-AUG-08 3CKQ 1 REMARK REVDAT 1 29-JUL-08 3CKQ 0 JRNL AUTH Z.FULTON,A.MCALISTER,M.C.WILCE,R.BRAMMANANTH, JRNL AUTH 2 L.ZAKER-TABRIZI,M.A.PERUGINI,S.P.BOTTOMLEY,R.L.COPPEL, JRNL AUTH 3 P.K.CRELLIN,J.ROSSJOHN,T.BEDDOE JRNL TITL CRYSTAL STRUCTURE OF A UDP-GLUCOSE-SPECIFIC JRNL TITL 2 GLYCOSYLTRANSFERASE FROM A MYCOBACTERIUM SPECIES. JRNL REF J.BIOL.CHEM. V. 283 27881 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18667419 JRNL DOI 10.1074/JBC.M801853200 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 7931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 383 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 568 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2238 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.54000 REMARK 3 B22 (A**2) : 0.54000 REMARK 3 B33 (A**2) : -1.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.418 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.367 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.427 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2346 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3226 ; 0.923 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 3.824 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;32.572 ;23.103 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 345 ;13.734 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;12.704 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1771 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1042 ; 0.169 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1586 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 81 ; 0.097 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.163 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.190 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1538 ; 0.160 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2440 ; 0.292 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 896 ; 0.257 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 782 ; 0.467 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2599 24.2521 26.2175 REMARK 3 T TENSOR REMARK 3 T11: 1.4727 T22: 0.3604 REMARK 3 T33: 0.7037 T12: -0.1059 REMARK 3 T13: 0.5330 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 4.0098 L22: 7.0772 REMARK 3 L33: 7.9839 L12: -1.8557 REMARK 3 L13: -2.2439 L23: 1.6599 REMARK 3 S TENSOR REMARK 3 S11: -0.8475 S12: -0.6885 S13: -0.7243 REMARK 3 S21: 2.3802 S22: 0.1487 S23: 1.1800 REMARK 3 S31: 1.6137 S32: -0.3554 S33: 0.6988 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 137 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1632 22.3596 20.1813 REMARK 3 T TENSOR REMARK 3 T11: 1.4539 T22: 0.3986 REMARK 3 T33: 1.1815 T12: -0.1084 REMARK 3 T13: 0.4206 T23: 0.1335 REMARK 3 L TENSOR REMARK 3 L11: 14.5293 L22: 0.2249 REMARK 3 L33: 18.3861 L12: -1.8076 REMARK 3 L13: -16.3443 L23: 2.0334 REMARK 3 S TENSOR REMARK 3 S11: -2.5902 S12: 1.6492 S13: 1.7386 REMARK 3 S21: 4.1519 S22: 0.5982 S23: 2.1912 REMARK 3 S31: 2.5748 S32: 0.5906 S33: 1.9919 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 142 A 191 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1475 15.3913 22.8444 REMARK 3 T TENSOR REMARK 3 T11: 1.9626 T22: 0.4732 REMARK 3 T33: 0.7892 T12: 0.1482 REMARK 3 T13: 0.5362 T23: 0.1639 REMARK 3 L TENSOR REMARK 3 L11: 3.0840 L22: 7.6895 REMARK 3 L33: 12.7117 L12: -1.7317 REMARK 3 L13: -1.7245 L23: 1.6495 REMARK 3 S TENSOR REMARK 3 S11: -0.6306 S12: -0.3270 S13: -1.4595 REMARK 3 S21: 2.3649 S22: 0.2838 S23: 0.7078 REMARK 3 S31: 2.4317 S32: 0.0959 S33: 0.3468 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 192 A 260 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0051 23.7594 15.8368 REMARK 3 T TENSOR REMARK 3 T11: 0.9188 T22: 0.3312 REMARK 3 T33: 0.5013 T12: 0.0537 REMARK 3 T13: -0.0024 T23: 0.1042 REMARK 3 L TENSOR REMARK 3 L11: 3.6160 L22: 4.6745 REMARK 3 L33: 8.9309 L12: -1.9960 REMARK 3 L13: -2.7579 L23: 3.0673 REMARK 3 S TENSOR REMARK 3 S11: -0.7104 S12: -0.6253 S13: -0.3346 REMARK 3 S21: 1.6870 S22: 0.3383 S23: 0.0110 REMARK 3 S31: 1.3509 S32: 0.6938 S33: 0.3720 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 261 A 267 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4870 15.4563 10.3740 REMARK 3 T TENSOR REMARK 3 T11: 1.1233 T22: 0.6721 REMARK 3 T33: 1.3163 T12: -0.9204 REMARK 3 T13: 0.9196 T23: -0.2669 REMARK 3 L TENSOR REMARK 3 L11: 8.2474 L22: 11.8024 REMARK 3 L33: 23.2716 L12: 3.1363 REMARK 3 L13: -12.5037 L23: 2.0113 REMARK 3 S TENSOR REMARK 3 S11: 0.6502 S12: 2.8141 S13: -0.6908 REMARK 3 S21: 0.8119 S22: -1.2762 S23: 1.7280 REMARK 3 S31: 7.5127 S32: -4.7553 S33: 0.6260 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 268 A 329 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4964 30.7186 2.4089 REMARK 3 T TENSOR REMARK 3 T11: 0.3333 T22: 0.4282 REMARK 3 T33: 0.6142 T12: -0.0561 REMARK 3 T13: -0.0133 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 3.7645 L22: 5.5261 REMARK 3 L33: 8.5394 L12: -1.1756 REMARK 3 L13: -0.2702 L23: 2.6337 REMARK 3 S TENSOR REMARK 3 S11: 0.2251 S12: 0.5782 S13: -0.0438 REMARK 3 S21: 0.3688 S22: -0.6036 S23: 0.7549 REMARK 3 S31: 0.0016 S32: -1.0251 S33: 0.3785 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046894. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0053 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7931 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.67100 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY REFINEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M AMMONIUM SULPHATE, 0.1 M HEPES PH REMARK 280 7.0, 20 MM MANGANESE CHLORIDE, 1 MM SODIUM THIOSULPHATE, 100 MM REMARK 280 URIDINE-5 -DIPHOSPHATE-GLUCOSE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.84350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.51250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.51250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.92175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.51250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.51250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.76525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.51250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.51250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.92175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.51250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.51250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.76525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.84350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 ASP A 5 REMARK 465 LEU A 6 REMARK 465 VAL A 7 REMARK 465 ALA A 8 REMARK 465 GLY A 9 REMARK 465 GLU A 10 REMARK 465 LEU A 11 REMARK 465 ALA A 12 REMARK 465 GLY A 13 REMARK 465 ASP A 14 REMARK 465 ASN A 175 REMARK 465 VAL A 176 REMARK 465 GLY A 177 REMARK 465 ASP A 178 REMARK 465 ALA A 179 REMARK 465 GLY A 180 REMARK 465 GLY A 181 REMARK 465 GLY A 182 REMARK 465 ALA A 183 REMARK 465 GLY A 184 REMARK 465 ALA A 185 REMARK 465 THR A 186 REMARK 465 GLY A 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 29 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 264 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 265 CG OD1 ND2 REMARK 470 ARG A 266 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 268 CG CD1 CD2 REMARK 470 ARG A 329 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 21 102.51 -51.92 REMARK 500 ASP A 28 35.18 -83.25 REMARK 500 LYS A 45 -70.80 -76.07 REMARK 500 ALA A 46 86.56 46.58 REMARK 500 ASP A 58 81.66 60.63 REMARK 500 ASP A 75 -19.42 77.14 REMARK 500 SER A 86 34.38 -89.15 REMARK 500 ASP A 90 -159.33 -87.13 REMARK 500 ASP A 91 33.02 -91.49 REMARK 500 LEU A 110 79.65 -158.91 REMARK 500 ASN A 144 82.04 53.90 REMARK 500 ASP A 161 -19.03 -162.19 REMARK 500 VAL A 195 -67.69 -104.66 REMARK 500 HIS A 263 -154.46 -147.65 REMARK 500 ASP A 301 -73.25 -84.70 REMARK 500 ILE A 326 -67.15 -95.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 330 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 141 OD2 REMARK 620 2 UPG A 332 O1A 81.9 REMARK 620 3 HOH A 335 O 73.1 64.4 REMARK 620 4 HOH A 336 O 103.5 131.2 164.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG A 332 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CKJ RELATED DB: PDB REMARK 900 RELATED ID: 3CKN RELATED DB: PDB REMARK 900 RELATED ID: 3CKO RELATED DB: PDB REMARK 900 RELATED ID: 3CKV RELATED DB: PDB DBREF 3CKQ A 1 329 UNP Q73WU1 Q73WU1_MYCPA 1 329 SEQRES 1 A 329 MET THR THR SER ASP LEU VAL ALA GLY GLU LEU ALA GLY SEQRES 2 A 329 ASP GLY LEU ARG ASP THR ARG PRO GLY ASP THR TRP LEU SEQRES 3 A 329 ALA ASP ARG SER TRP ASN ARG PRO GLY TRP THR VAL ALA SEQRES 4 A 329 GLU LEU GLU ALA ALA LYS ALA GLY ARG THR ILE SER VAL SEQRES 5 A 329 VAL LEU PRO ALA LEU ASP GLU GLU ASP THR ILE GLY SER SEQRES 6 A 329 VAL ILE ASP SER ILE SER PRO LEU VAL ASP GLY LEU VAL SEQRES 7 A 329 ASP GLU LEU ILE VAL LEU ASP SER GLY SER THR ASP ASP SEQRES 8 A 329 THR GLU ILE ARG ALA VAL ALA ALA GLY ALA ARG VAL VAL SEQRES 9 A 329 SER ARG GLU GLN ALA LEU PRO GLU VAL PRO ILE ARG PRO SEQRES 10 A 329 GLY LYS GLY GLU ALA LEU TRP ARG SER LEU ALA ALA SER SEQRES 11 A 329 ARG GLY ASP ILE VAL VAL PHE VAL ASP SER ASP LEU ILE SEQRES 12 A 329 ASN PRO HIS PRO MET PHE VAL PRO TRP LEU VAL GLY PRO SEQRES 13 A 329 LEU LEU THR GLY ASP GLY VAL HIS LEU VAL LYS SER PHE SEQRES 14 A 329 TYR ARG ARG PRO LEU ASN VAL GLY ASP ALA GLY GLY GLY SEQRES 15 A 329 ALA GLY ALA THR GLY GLY GLY ARG VAL THR GLU LEU VAL SEQRES 16 A 329 ALA ARG PRO LEU LEU ALA ALA LEU ARG PRO GLU LEU GLY SEQRES 17 A 329 CYS ILE LEU GLN PRO LEU GLY GLY GLU TYR ALA ALA THR SEQRES 18 A 329 ARG GLU LEU LEU THR SER VAL PRO PHE ALA PRO GLY TYR SEQRES 19 A 329 GLY VAL GLU ILE GLY LEU LEU VAL ASP THR PHE ASP ARG SEQRES 20 A 329 LEU GLY LEU ASP ALA ILE ALA GLN VAL ASN LEU GLY VAL SEQRES 21 A 329 ARG GLU HIS ARG ASN ARG PRO LEU ALA GLU LEU GLY ALA SEQRES 22 A 329 MET SER ARG GLN VAL ILE ALA THR LEU LEU SER ARG CYS SEQRES 23 A 329 GLY ILE PRO ASP SER GLY VAL GLY LEU THR GLN PHE VAL SEQRES 24 A 329 ALA ASP GLY PRO GLU GLY GLN SER TYR THR GLN HIS THR SEQRES 25 A 329 TRP PRO VAL SER LEU ALA ASP ARG PRO PRO MET GLN ALA SEQRES 26 A 329 ILE ARG PRO ARG HET MN A 330 1 HET SO4 A 331 5 HET UPG A 332 36 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 2 MN MN 2+ FORMUL 3 SO4 O4 S 2- FORMUL 4 UPG C15 H24 N2 O17 P2 FORMUL 5 HOH *4(H2 O) HELIX 1 1 THR A 37 ALA A 44 1 8 HELIX 2 2 THR A 62 SER A 71 1 10 HELIX 3 3 PRO A 72 VAL A 74 5 3 HELIX 4 4 ASP A 91 ALA A 98 1 8 HELIX 5 5 ARG A 106 LEU A 110 1 5 HELIX 6 6 GLY A 118 SER A 130 1 13 HELIX 7 7 MET A 148 THR A 159 1 12 HELIX 8 8 GLY A 189 VAL A 195 1 7 HELIX 9 9 VAL A 195 ARG A 204 1 10 HELIX 10 10 PRO A 205 ILE A 210 5 6 HELIX 11 11 ARG A 222 THR A 226 1 5 HELIX 12 12 PRO A 232 TYR A 234 5 3 HELIX 13 13 GLY A 235 GLY A 249 1 15 HELIX 14 14 PRO A 267 CYS A 286 1 20 HELIX 15 15 PRO A 322 ARG A 327 1 6 SHEET 1 A 9 SER A 30 ASN A 32 0 SHEET 2 A 9 THR A 24 LEU A 26 -1 N LEU A 26 O SER A 30 SHEET 3 A 9 ILE A 253 VAL A 260 -1 O GLN A 255 N TRP A 25 SHEET 4 A 9 LEU A 165 ARG A 171 1 N LYS A 167 O ALA A 254 SHEET 5 A 9 TYR A 218 THR A 221 -1 O ALA A 219 N VAL A 166 SHEET 6 A 9 ILE A 134 PHE A 137 -1 N PHE A 137 O TYR A 218 SHEET 7 A 9 ILE A 50 ALA A 56 1 N VAL A 53 O VAL A 136 SHEET 8 A 9 GLU A 80 ASP A 85 1 O ILE A 82 N VAL A 52 SHEET 9 A 9 ARG A 102 SER A 105 1 O ARG A 102 N VAL A 83 SHEET 1 B 2 THR A 296 ALA A 300 0 SHEET 2 B 2 TYR A 308 THR A 312 -1 O HIS A 311 N GLN A 297 LINK OD2 ASP A 141 MN MN A 330 1555 1555 2.08 LINK MN MN A 330 O1A UPG A 332 1555 1555 2.29 LINK MN MN A 330 O HOH A 335 1555 1555 2.37 LINK MN MN A 330 O HOH A 336 1555 1555 2.41 SITE 1 AC1 4 ASP A 141 HIS A 263 HOH A 335 HOH A 336 SITE 1 AC2 7 ARG A 17 PRO A 114 ARG A 116 TYR A 308 SITE 2 AC2 7 THR A 309 GLN A 310 ARG A 320 SITE 1 AC3 18 PRO A 55 ALA A 56 LEU A 57 GLU A 59 SITE 2 AC3 18 SER A 86 GLY A 118 LYS A 119 ASP A 139 SITE 3 AC3 18 SER A 140 ASP A 141 LEU A 214 GLY A 216 SITE 4 AC3 18 TYR A 234 GLU A 237 HIS A 263 MET A 274 SITE 5 AC3 18 HOH A 335 HOH A 336 CRYST1 87.025 87.025 103.687 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011491 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011491 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009644 0.00000