HEADER HYDROLASE 18-MAR-08 3CL4 TITLE CRYSTAL STRUCTURE OF BOVINE CORONAVIRUS HEMAGGLUTININ-ESTERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ-ESTERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 19-388; COMPND 5 SYNONYM: HE PROTEIN, E3 GLYCOPROTEIN; COMPND 6 EC: 3.1.1.53; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOVINE CORONAVIRUS; SOURCE 3 ORGANISM_COMMON: STRAIN MEBUS; SOURCE 4 STRAIN: MEBUS; SOURCE 5 GENE: HE; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: S1-IG KEYWDS SGNH-HYDROLASE FOLD, SWISS ROLL, ENVELOPE PROTEIN, GLYCOPROTEIN, KEYWDS 2 HEMAGGLUTININ, MEMBRANE, TRANSMEMBRANE, VIRION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.H.ZENG,M.A.LANGEREIS,A.L.W.VAN VLIET,E.G.HUIZINGA,R.J.DE GROOT REVDAT 7 30-AUG-23 3CL4 1 HETSYN REVDAT 6 29-JUL-20 3CL4 1 COMPND REMARK HETNAM SSBOND REVDAT 6 2 1 LINK SITE ATOM REVDAT 5 13-JUL-11 3CL4 1 VERSN REVDAT 4 24-FEB-09 3CL4 1 VERSN REVDAT 3 12-AUG-08 3CL4 1 JRNL REVDAT 2 10-JUN-08 3CL4 1 MODRES REVDAT 1 03-JUN-08 3CL4 0 JRNL AUTH Q.ZENG,M.A.LANGEREIS,A.L.VAN VLIET,E.G.HUIZINGA,R.J.DE GROOT JRNL TITL STRUCTURE OF CORONAVIRUS HEMAGGLUTININ-ESTERASE OFFERS JRNL TITL 2 INSIGHT INTO CORONA AND INFLUENZA VIRUS EVOLUTION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 9065 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18550812 JRNL DOI 10.1073/PNAS.0800502105 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2035 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2633 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 171 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2861 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 257 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : -0.61000 REMARK 3 B12 (A**2) : 0.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.338 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3057 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1981 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4177 ; 1.555 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4756 ; 1.408 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 357 ; 9.349 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;35.595 ;24.211 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 425 ;13.249 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;16.995 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 450 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3435 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 672 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1781 ; 0.865 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 723 ; 0.214 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2882 ; 1.524 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1276 ; 2.160 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1295 ; 3.384 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CL4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : THREE DIAMOND MONOCHROMATORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39252 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 52.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.13500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.50 REMARK 200 R MERGE FOR SHELL (I) : 0.80400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1FLC CHAIN A RESI 40-400 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M KH2PO4, 10% (W/V) PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 188.24000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 94.12000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 141.18000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.06000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 235.30000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 188.24000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 94.12000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.06000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 141.18000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 235.30000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 40.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 44.41500 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 76.92904 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 47.06000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2742 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 377 REMARK 465 ASN A 378 REMARK 465 THR A 379 REMARK 465 PRO A 380 REMARK 465 ASP A 381 REMARK 465 VAL A 382 REMARK 465 PRO A 383 REMARK 465 ILE A 384 REMARK 465 CYS A 385 REMARK 465 VAL A 386 REMARK 465 TYR A 387 REMARK 465 ASP A 388 REMARK 465 SER A 389 REMARK 465 ASP A 390 REMARK 465 PRO A 391 REMARK 465 LEU A 392 REMARK 465 VAL A 393 REMARK 465 PRO A 394 REMARK 465 ARG A 395 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 31 -158.22 -145.64 REMARK 500 ASP A 39 -153.44 -132.34 REMARK 500 SER A 164 117.29 -160.60 REMARK 500 ALA A 179 -56.98 -21.96 REMARK 500 THR A 215 -9.94 79.37 REMARK 500 GLU A 265 149.76 -174.90 REMARK 500 LEU A 266 -146.30 62.87 REMARK 500 LYS A 279 84.83 68.16 REMARK 500 SER A 299 -167.17 -105.57 REMARK 500 ASN A 358 -75.35 -99.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 179 ASN A 180 -122.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 2 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 220 OD1 REMARK 620 2 SER A 221 O 87.9 REMARK 620 3 GLN A 222 OE1 142.3 86.5 REMARK 620 4 SER A 263 OG 139.3 84.6 77.1 REMARK 620 5 LEU A 267 O 99.0 170.2 92.3 85.6 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FLC RELATED DB: PDB REMARK 900 RELATED ID: 3CL5 RELATED DB: PDB DBREF 3CL4 A 19 388 UNP P15776 HEMA_CVBM 19 388 SEQADV 3CL4 SER A 389 UNP P15776 EXPRESSION TAG SEQADV 3CL4 ASP A 390 UNP P15776 EXPRESSION TAG SEQADV 3CL4 PRO A 391 UNP P15776 EXPRESSION TAG SEQADV 3CL4 LEU A 392 UNP P15776 EXPRESSION TAG SEQADV 3CL4 VAL A 393 UNP P15776 EXPRESSION TAG SEQADV 3CL4 PRO A 394 UNP P15776 EXPRESSION TAG SEQADV 3CL4 ARG A 395 UNP P15776 EXPRESSION TAG SEQRES 1 A 377 PHE ASP ASN PRO PRO THR ASN VAL VAL SER HIS LEU ASN SEQRES 2 A 377 GLY ASP TRP PHE LEU PHE GLY ASP SER ARG SER ASP CYS SEQRES 3 A 377 ASN HIS VAL VAL ASN THR ASN PRO ARG ASN TYR SER TYR SEQRES 4 A 377 MET ASP LEU ASN PRO ALA LEU CYS ASP SER GLY LYS ILE SEQRES 5 A 377 SER SER LYS ALA GLY ASN SER ILE PHE ARG SER PHE HIS SEQRES 6 A 377 PHE THR ASP PHE TYR ASN TYR THR GLY GLU GLY GLN GLN SEQRES 7 A 377 ILE ILE PHE TYR GLU GLY VAL ASN PHE THR PRO TYR HIS SEQRES 8 A 377 ALA PHE LYS CYS THR THR SER GLY SER ASN ASP ILE TRP SEQRES 9 A 377 MET GLN ASN LYS GLY LEU PHE TYR THR GLN VAL TYR LYS SEQRES 10 A 377 ASN MET ALA VAL TYR ARG SER LEU THR PHE VAL ASN VAL SEQRES 11 A 377 PRO TYR VAL TYR ASN GLY SER ALA GLN SER THR ALA LEU SEQRES 12 A 377 CYS LYS SER GLY SER LEU VAL LEU ASN ASN PRO ALA TYR SEQRES 13 A 377 ILE ALA ARG GLU ALA ASN PHE GLY ASP TYR TYR TYR LYS SEQRES 14 A 377 VAL GLU ALA ASP PHE TYR LEU SER GLY CYS ASP GLU TYR SEQRES 15 A 377 ILE VAL PRO LEU CYS ILE PHE ASN GLY LYS PHE LEU SER SEQRES 16 A 377 ASN THR LYS TYR TYR ASP ASP SER GLN TYR TYR PHE ASN SEQRES 17 A 377 LYS ASP THR GLY VAL ILE TYR GLY LEU ASN SER THR GLU SEQRES 18 A 377 THR ILE THR THR GLY PHE ASP PHE ASN CYS HIS TYR LEU SEQRES 19 A 377 VAL LEU PRO SER GLY ASN TYR LEU ALA ILE SER ASN GLU SEQRES 20 A 377 LEU LEU LEU THR VAL PRO THR LYS ALA ILE CYS LEU ASN SEQRES 21 A 377 LYS ARG LYS ASP PHE THR PRO VAL GLN VAL VAL ASP SER SEQRES 22 A 377 ARG TRP ASN ASN ALA ARG GLN SER ASP ASN MET THR ALA SEQRES 23 A 377 VAL ALA CYS GLN PRO PRO TYR CYS TYR PHE ARG ASN SER SEQRES 24 A 377 THR THR ASN TYR VAL GLY VAL TYR ASP ILE ASN HIS GLY SEQRES 25 A 377 ASP ALA GLY PHE THR SER ILE LEU SER GLY LEU LEU TYR SEQRES 26 A 377 ASP SER PRO CYS PHE SER GLN GLN GLY VAL PHE ARG TYR SEQRES 27 A 377 ASP ASN VAL SER SER VAL TRP PRO LEU TYR SER TYR GLY SEQRES 28 A 377 ARG CYS PRO THR ALA ALA ASP ILE ASN THR PRO ASP VAL SEQRES 29 A 377 PRO ILE CYS VAL TYR ASP SER ASP PRO LEU VAL PRO ARG MODRES 3CL4 ASN A 54 ASN GLYCOSYLATION SITE MODRES 3CL4 ASN A 89 ASN GLYCOSYLATION SITE MODRES 3CL4 ASN A 236 ASN GLYCOSYLATION SITE MODRES 3CL4 ASN A 301 ASN GLYCOSYLATION SITE MODRES 3CL4 ASN A 316 ASN GLYCOSYLATION SITE MODRES 3CL4 ASN A 358 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET NAG A1961 14 HET NAG A2523 14 HET NAG A2527 14 HET NAG A2521 14 HET NAG A2520 14 HET K A 2 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM K POTASSIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 7(C8 H15 N O6) FORMUL 8 K K 1+ FORMUL 9 HOH *257(H2 O) HELIX 1 1 ARG A 41 THR A 50 5 10 HELIX 2 2 ASN A 54 MET A 58 5 5 HELIX 3 3 ASN A 61 CYS A 65 5 5 HELIX 4 4 SER A 77 PHE A 84 1 8 HELIX 5 5 THR A 106 ALA A 110 5 5 HELIX 6 6 SER A 118 ALA A 138 1 21 HELIX 7 7 ASN A 301 CYS A 307 1 7 HELIX 8 8 ALA A 332 SER A 339 1 8 HELIX 9 9 GLY A 340 TYR A 343 5 4 SHEET 1 A 4 PRO A 23 THR A 24 0 SHEET 2 A 4 VAL A 353 PHE A 354 -1 O VAL A 353 N THR A 24 SHEET 3 A 4 CYS A 347 PHE A 348 -1 N CYS A 347 O PHE A 354 SHEET 4 A 4 TYR A 368 GLY A 369 -1 O TYR A 368 N PHE A 348 SHEET 1 B 5 ILE A 70 LYS A 73 0 SHEET 2 B 5 TRP A 34 ASP A 39 1 N LEU A 36 O SER A 71 SHEET 3 B 5 GLN A 96 TYR A 100 1 O ILE A 98 N PHE A 35 SHEET 4 B 5 VAL A 286 VAL A 289 1 O VAL A 289 N PHE A 99 SHEET 5 B 5 CYS A 312 ARG A 315 1 O ARG A 315 N VAL A 288 SHEET 1 C 5 GLY A 92 GLU A 93 0 SHEET 2 C 5 TYR A 140 ASN A 147 -1 O LEU A 143 N GLY A 92 SHEET 3 C 5 LYS A 273 ARG A 280 -1 O CYS A 276 N THR A 144 SHEET 4 C 5 VAL A 188 PHE A 207 -1 N GLU A 199 O LEU A 277 SHEET 5 C 5 TYR A 150 TYR A 152 -1 N VAL A 151 O ASP A 191 SHEET 1 D 7 GLY A 92 GLU A 93 0 SHEET 2 D 7 TYR A 140 ASN A 147 -1 O LEU A 143 N GLY A 92 SHEET 3 D 7 LYS A 273 ARG A 280 -1 O CYS A 276 N THR A 144 SHEET 4 D 7 VAL A 188 PHE A 207 -1 N GLU A 199 O LEU A 277 SHEET 5 D 7 PHE A 247 GLU A 265 -1 O ALA A 261 N ALA A 190 SHEET 6 D 7 SER A 221 ASN A 226 -1 N TYR A 223 O ILE A 262 SHEET 7 D 7 ILE A 232 ASN A 236 -1 O LEU A 235 N GLN A 222 SHEET 1 E 3 SER A 158 THR A 159 0 SHEET 2 E 3 ALA A 173 ILE A 175 -1 O TYR A 174 N THR A 159 SHEET 3 E 3 LEU A 268 VAL A 270 -1 O VAL A 270 N ALA A 173 SHEET 1 F 2 LYS A 163 SER A 164 0 SHEET 2 F 2 LEU A 167 VAL A 168 -1 O LEU A 167 N SER A 164 SHEET 1 G 2 PHE A 211 SER A 213 0 SHEET 2 G 2 LYS A 216 TYR A 218 -1 O TYR A 218 N PHE A 211 SHEET 1 H 2 GLY A 323 ASP A 326 0 SHEET 2 H 2 HIS A 329 ASP A 331 -1 O HIS A 329 N ASP A 326 SSBOND 1 CYS A 44 CYS A 65 1555 1555 2.07 SSBOND 2 CYS A 113 CYS A 162 1555 1555 2.02 SSBOND 3 CYS A 197 CYS A 276 1555 1555 2.05 SSBOND 4 CYS A 205 CYS A 249 1555 1555 2.01 SSBOND 5 CYS A 307 CYS A 312 1555 1555 2.04 SSBOND 6 CYS A 347 CYS A 371 1555 1555 2.03 LINK ND2 ASN A 54 C1 NAG A2520 1555 1555 1.43 LINK ND2 ASN A 89 C1 NAG A2523 1555 1555 1.44 LINK ND2 ASN A 236 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 301 C1 NAG A1961 1555 1555 1.45 LINK ND2 ASN A 316 C1 NAG A2521 1555 1555 1.43 LINK ND2 ASN A 358 C1 NAG A2527 1555 1555 1.46 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK K K A 2 OD1 ASP A 220 1555 1555 2.57 LINK K K A 2 O SER A 221 1555 1555 2.81 LINK K K A 2 OE1 GLN A 222 1555 1555 2.87 LINK K K A 2 OG SER A 263 1555 1555 2.66 LINK K K A 2 O LEU A 267 1555 1555 2.71 CISPEP 1 ASN A 51 PRO A 52 0 -2.16 CISPEP 2 ASN A 171 PRO A 172 0 -4.84 CISPEP 3 PRO A 309 PRO A 310 0 0.05 CRYST1 88.830 88.830 282.360 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011257 0.006499 0.000000 0.00000 SCALE2 0.000000 0.012999 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003542 0.00000