HEADER TRANSPORT PROTEIN 19-MAR-08 3CLL TITLE CRYSTAL STRUCTURE OF THE SPINACH AQUAPORIN SOPIP2;1 S115E MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: AQUAPORIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPINACIA OLERACEA; SOURCE 3 ORGANISM_COMMON: SPINACH; SOURCE 4 ORGANISM_TAXID: 3562; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: X33; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPICZB KEYWDS MEMBRANE PROTEIN, AQUAPORIN, TRANSMEMBRANE, TRANSPORT, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.NYBLOM,A.ALFREDSSON,K.HALLGREN,K.HEDFALK,R.NEUTZE,S.TRNROTH- AUTHOR 2 HORSEFIELD REVDAT 4 30-AUG-23 3CLL 1 REMARK REVDAT 3 20-OCT-21 3CLL 1 SEQADV REVDAT 2 26-MAY-09 3CLL 1 JRNL REVDAT 1 24-FEB-09 3CLL 0 JRNL AUTH M.NYBLOM,A.FRICK,Y.WANG,M.EKVALL,K.HALLGREN,K.HEDFALK, JRNL AUTH 2 R.NEUTZE,E.TAJKHORSHID,S.TORNROTH-HORSEFIELD JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF SOPIP2;1 MUTANTS ADDS JRNL TITL 2 INSIGHT INTO PLANT AQUAPORIN GATING. JRNL REF J.MOL.BIOL. V. 387 653 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19302796 JRNL DOI 10.1016/J.JMB.2009.01.065 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13615 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 718 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1020 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1530 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.2040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1813 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : 0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.215 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.080 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1864 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2542 ; 1.831 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 9.629 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ;34.856 ;22.154 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 269 ;17.396 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;19.509 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 293 ; 0.179 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1395 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 954 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1322 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 74 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 61 ; 0.309 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.196 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1220 ; 0.938 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1892 ; 1.582 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 768 ; 2.330 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 650 ; 3.120 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CLL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14333 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 61.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12900 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1Z98 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400, 0.1M NACL, 0.1M MES, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.42750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.42750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.26700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.42750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.42750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.26700 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 43.42750 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 43.42750 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 43.26700 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 43.42750 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 43.42750 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 43.26700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -135.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 282 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 465 VAL A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 GLU A 8 REMARK 465 ALA A 9 REMARK 465 GLN A 10 REMARK 465 ALA A 11 REMARK 465 HIS A 12 REMARK 465 GLN A 13 REMARK 465 HIS A 14 REMARK 465 GLY A 15 REMARK 465 LYS A 16 REMARK 465 ASP A 17 REMARK 465 TYR A 18 REMARK 465 VAL A 19 REMARK 465 ASP A 20 REMARK 465 PRO A 21 REMARK 465 PRO A 22 REMARK 465 PRO A 23 REMARK 465 ALA A 24 REMARK 465 PRO A 25 REMARK 465 PHE A 26 REMARK 465 ALA A 268 REMARK 465 ILE A 269 REMARK 465 LYS A 270 REMARK 465 ALA A 271 REMARK 465 LEU A 272 REMARK 465 GLY A 273 REMARK 465 SER A 274 REMARK 465 PHE A 275 REMARK 465 ARG A 276 REMARK 465 SER A 277 REMARK 465 ASN A 278 REMARK 465 PRO A 279 REMARK 465 THR A 280 REMARK 465 ASN A 281 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 317 O HOH A 319 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 28 C - N - CA ANGL. DEV. = 17.5 DEGREES REMARK 500 ASP A 28 N - CA - C ANGL. DEV. = 25.2 DEGREES REMARK 500 LYS A 33 N - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 28 1.54 26.10 REMARK 500 GLU A 31 35.99 97.79 REMARK 500 LYS A 33 -72.08 146.94 REMARK 500 LEU A 34 -85.53 14.41 REMARK 500 ASN A 101 112.07 -174.21 REMARK 500 MET A 141 56.25 -155.47 REMARK 500 THR A 219 116.67 80.12 REMARK 500 ILE A 221 24.24 47.98 REMARK 500 ASN A 222 93.02 -170.42 REMARK 500 ARG A 265 49.39 36.38 REMARK 500 ALA A 266 105.68 57.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 27 ASP A 28 -37.46 REMARK 500 GLU A 31 LEU A 32 -69.97 REMARK 500 LYS A 33 LEU A 34 75.77 REMARK 500 ARG A 265 ALA A 266 38.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z98 RELATED DB: PDB REMARK 900 CLOSED STRUCTURE OF WILD-TYPE SOPIP2;1 REMARK 900 RELATED ID: 2B5F RELATED DB: PDB REMARK 900 OPEN STRUCTURE OF WILD-TYPE SOPIP2;1 DBREF 3CLL A 1 281 UNP Q41372 Q41372_SPIOL 1 281 SEQADV 3CLL MET A -18 UNP Q41372 EXPRESSION TAG SEQADV 3CLL SER A -17 UNP Q41372 EXPRESSION TAG SEQADV 3CLL HIS A -16 UNP Q41372 EXPRESSION TAG SEQADV 3CLL HIS A -15 UNP Q41372 EXPRESSION TAG SEQADV 3CLL HIS A -14 UNP Q41372 EXPRESSION TAG SEQADV 3CLL HIS A -13 UNP Q41372 EXPRESSION TAG SEQADV 3CLL HIS A -12 UNP Q41372 EXPRESSION TAG SEQADV 3CLL HIS A -11 UNP Q41372 EXPRESSION TAG SEQADV 3CLL SER A -10 UNP Q41372 EXPRESSION TAG SEQADV 3CLL SER A -9 UNP Q41372 EXPRESSION TAG SEQADV 3CLL GLY A -8 UNP Q41372 EXPRESSION TAG SEQADV 3CLL LEU A -7 UNP Q41372 EXPRESSION TAG SEQADV 3CLL VAL A -6 UNP Q41372 EXPRESSION TAG SEQADV 3CLL PRO A -5 UNP Q41372 EXPRESSION TAG SEQADV 3CLL ARG A -4 UNP Q41372 EXPRESSION TAG SEQADV 3CLL GLY A -3 UNP Q41372 EXPRESSION TAG SEQADV 3CLL SER A -2 UNP Q41372 EXPRESSION TAG SEQADV 3CLL HIS A -1 UNP Q41372 EXPRESSION TAG SEQADV 3CLL MET A 0 UNP Q41372 EXPRESSION TAG SEQADV 3CLL GLU A 115 UNP Q41372 SER 115 ENGINEERED MUTATION SEQRES 1 A 300 MET SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL SEQRES 2 A 300 PRO ARG GLY SER HIS MET MET SER LYS GLU VAL SER GLU SEQRES 3 A 300 GLU ALA GLN ALA HIS GLN HIS GLY LYS ASP TYR VAL ASP SEQRES 4 A 300 PRO PRO PRO ALA PRO PHE PHE ASP LEU GLY GLU LEU LYS SEQRES 5 A 300 LEU TRP SER PHE TRP ARG ALA ALA ILE ALA GLU PHE ILE SEQRES 6 A 300 ALA THR LEU LEU PHE LEU TYR ILE THR VAL ALA THR VAL SEQRES 7 A 300 ILE GLY HIS SER LYS GLU THR VAL VAL CYS GLY SER VAL SEQRES 8 A 300 GLY LEU LEU GLY ILE ALA TRP ALA PHE GLY GLY MET ILE SEQRES 9 A 300 PHE VAL LEU VAL TYR CYS THR ALA GLY ILE SER GLY GLY SEQRES 10 A 300 HIS ILE ASN PRO ALA VAL THR PHE GLY LEU PHE LEU ALA SEQRES 11 A 300 ARG LYS VAL GLU LEU LEU ARG ALA LEU VAL TYR MET ILE SEQRES 12 A 300 ALA GLN CYS LEU GLY ALA ILE CYS GLY VAL GLY LEU VAL SEQRES 13 A 300 LYS ALA PHE MET LYS GLY PRO TYR ASN GLN PHE GLY GLY SEQRES 14 A 300 GLY ALA ASN SER VAL ALA LEU GLY TYR ASN LYS GLY THR SEQRES 15 A 300 ALA LEU GLY ALA GLU ILE ILE GLY THR PHE VAL LEU VAL SEQRES 16 A 300 TYR THR VAL PHE SER ALA THR ASP PRO LYS ARG SER ALA SEQRES 17 A 300 ARG ASP SER HIS VAL PRO ILE LEU ALA PRO LEU PRO ILE SEQRES 18 A 300 GLY PHE ALA VAL PHE MET VAL HIS LEU ALA THR ILE PRO SEQRES 19 A 300 ILE THR GLY THR GLY ILE ASN PRO ALA ARG SER PHE GLY SEQRES 20 A 300 ALA ALA VAL ILE PHE ASN SER ASN LYS VAL TRP ASP ASP SEQRES 21 A 300 GLN TRP ILE PHE TRP VAL GLY PRO PHE ILE GLY ALA ALA SEQRES 22 A 300 VAL ALA ALA ALA TYR HIS GLN TYR VAL LEU ARG ALA ALA SEQRES 23 A 300 ALA ILE LYS ALA LEU GLY SER PHE ARG SER ASN PRO THR SEQRES 24 A 300 ASN FORMUL 2 HOH *73(H2 O) HELIX 1 1 LEU A 34 LYS A 64 1 31 HELIX 2 2 VAL A 72 GLY A 97 1 26 HELIX 3 3 ASN A 101 ALA A 111 1 11 HELIX 4 4 GLU A 115 MET A 141 1 27 HELIX 5 5 MET A 141 PHE A 148 1 8 HELIX 6 6 ASN A 160 ALA A 182 1 23 HELIX 7 7 ALA A 198 GLY A 218 1 21 HELIX 8 8 ASN A 222 ASN A 234 1 13 HELIX 9 9 SER A 235 GLN A 242 1 8 HELIX 10 10 TRP A 243 TYR A 262 1 20 SHEET 1 A 2 THR A 183 SER A 188 0 SHEET 2 A 2 PRO A 195 LEU A 197 -1 O ILE A 196 N ASP A 184 CISPEP 1 LEU A 32 LYS A 33 0 -28.97 CRYST1 86.855 86.855 86.534 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011513 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011556 0.00000