HEADER ELECTRON TRANSPORT 20-MAR-08 3CLU TITLE CRYSTAL STRUCTURE OF THE R236K MUTANT FROM METHYLOPHILUS TITLE 2 METHYLOTROPHUS ETF COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT BETA; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: BETA-ETF, ELECTRON TRANSFER FLAVOPROTEIN SMALL SUBUNIT, COMPND 5 ETFSS; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT ALPHA; COMPND 9 CHAIN: D; COMPND 10 SYNONYM: ALPHA-ETF, ELECTRON TRANSFER FLAVOPROTEIN LARGE SUBUNIT, COMPND 11 ETFLS; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOPHILUS METHYLOTROPHUS; SOURCE 3 ORGANISM_TAXID: 17; SOURCE 4 GENE: ETFB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: METHYLOPHILUS METHYLOTROPHUS; SOURCE 9 ORGANISM_TAXID: 17; SOURCE 10 GENE: ETFA; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ETF, TMADH, ELECTRON TRANSFER, FLAVOPROTEIN, DYNAMIC INTERFACE, KEYWDS 2 ELECTRON TRANSPORT, FAD, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR G.KATONA,D.LEYS REVDAT 6 30-AUG-23 3CLU 1 REMARK REVDAT 5 20-OCT-21 3CLU 1 REMARK SEQADV REVDAT 4 25-OCT-17 3CLU 1 REMARK REVDAT 3 05-OCT-11 3CLU 1 JRNL VERSN REVDAT 2 24-FEB-09 3CLU 1 VERSN REVDAT 1 08-APR-08 3CLU 0 JRNL AUTH S.G.BURGESS,H.L.MESSIHA,G.KATONA,S.E.RIGBY,D.LEYS, JRNL AUTH 2 N.S.SCRUTTON JRNL TITL PROBING THE DYNAMIC INTERFACE BETWEEN TRIMETHYLAMINE JRNL TITL 2 DEHYDROGENASE (TMADH) AND ELECTRON TRANSFERRING FLAVOPROTEIN JRNL TITL 3 (ETF) IN THE TMADH-2ETF COMPLEX: ROLE OF THE ARG-ALPHA237 JRNL TITL 4 (ETF) AND TYR-442 (TMADH) RESIDUE PAIR. JRNL REF BIOCHEMISTRY V. 47 5168 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18407658 JRNL DOI 10.1021/BI800127D REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 52470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2793 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3641 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4213 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 544 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.42000 REMARK 3 B22 (A**2) : 1.42000 REMARK 3 B33 (A**2) : -2.13000 REMARK 3 B12 (A**2) : 0.71000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.880 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4400 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4020 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6003 ; 1.541 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9319 ; 0.825 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 578 ; 6.373 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;36.046 ;25.371 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 700 ;13.776 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;20.607 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 705 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4965 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 808 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 922 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4303 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2265 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2544 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 434 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.146 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 50 ; 0.250 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.255 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2923 ; 0.815 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1180 ; 0.200 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4592 ; 1.190 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1699 ; 1.968 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1411 ; 3.037 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 236 REMARK 3 ORIGIN FOR THE GROUP (A): 82.0250 44.7670 0.6360 REMARK 3 T TENSOR REMARK 3 T11: -0.1836 T22: -0.1746 REMARK 3 T33: -0.1184 T12: -0.0243 REMARK 3 T13: -0.0236 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.0541 L22: 1.1153 REMARK 3 L33: 1.2997 L12: -0.1340 REMARK 3 L13: -0.2137 L23: -0.0727 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: 0.0096 S13: -0.0975 REMARK 3 S21: -0.0028 S22: 0.0155 S23: 0.0362 REMARK 3 S31: 0.1526 S32: 0.0226 S33: -0.0186 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 237 C 261 REMARK 3 ORIGIN FOR THE GROUP (A): 54.6870 63.7800 -22.3480 REMARK 3 T TENSOR REMARK 3 T11: -0.1323 T22: 0.1670 REMARK 3 T33: -0.1020 T12: 0.0876 REMARK 3 T13: -0.0126 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 2.6412 L22: 0.4173 REMARK 3 L33: 2.8617 L12: -0.7131 REMARK 3 L13: -1.7301 L23: 1.0904 REMARK 3 S TENSOR REMARK 3 S11: 0.0790 S12: 0.4516 S13: -0.0143 REMARK 3 S21: -0.1374 S22: -0.2591 S23: -0.1080 REMARK 3 S31: -0.2140 S32: -0.6927 S33: 0.1801 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 194 REMARK 3 ORIGIN FOR THE GROUP (A): 73.6290 63.7190 13.8590 REMARK 3 T TENSOR REMARK 3 T11: -0.1254 T22: -0.1501 REMARK 3 T33: -0.1188 T12: -0.0154 REMARK 3 T13: 0.0290 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.3731 L22: 1.1654 REMARK 3 L33: 0.9658 L12: 0.4176 REMARK 3 L13: 0.3044 L23: 0.3529 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: -0.1749 S13: 0.1018 REMARK 3 S21: 0.2051 S22: -0.0310 S23: 0.1254 REMARK 3 S31: -0.1394 S32: -0.0992 S33: -0.0089 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 195 D 318 REMARK 3 ORIGIN FOR THE GROUP (A): 68.8260 64.5830 -18.3890 REMARK 3 T TENSOR REMARK 3 T11: -0.1545 T22: -0.0750 REMARK 3 T33: -0.0814 T12: 0.0433 REMARK 3 T13: 0.0221 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 2.0225 L22: 0.8678 REMARK 3 L33: 3.3637 L12: -0.2088 REMARK 3 L13: 0.1884 L23: 0.3583 REMARK 3 S TENSOR REMARK 3 S11: 0.1198 S12: 0.2420 S13: 0.0857 REMARK 3 S21: -0.1018 S22: -0.1162 S23: -0.1268 REMARK 3 S31: -0.2761 S32: -0.1488 S33: -0.0036 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CLU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046931. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58203 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: DIFFERENCE FOURIER REMARK 200 STARTING MODEL: 1O97 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LIMITED DIGEST WITH TRYPSIN, 2.0 M REMARK 280 SODIUM PHOSPHATE, PH 6.2, VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.09367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.18733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.14050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.23417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 14.04683 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU C 194 REMARK 465 ARG C 195 REMARK 465 GLY C 196 REMARK 465 ILE C 197 REMARK 465 LYS C 198 REMARK 465 GLN C 199 REMARK 465 ALA C 200 REMARK 465 ALA C 201 REMARK 465 THR C 202 REMARK 465 LYS C 262 REMARK 465 GLY C 263 REMARK 465 ALA C 264 REMARK 465 MET D 0 REMARK 465 ALA D 320 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C 15 CG CD OE1 OE2 REMARK 470 GLU C 21 CG CD OE1 OE2 REMARK 470 GLU C 51 CG CD OE1 OE2 REMARK 470 SER C 52 OG REMARK 470 ASP C 54 CG OD1 OD2 REMARK 470 LYS C 152 CG CD CE NZ REMARK 470 LYS C 157 CD CE NZ REMARK 470 ARG C 190 CG CD NE CZ NH1 NH2 REMARK 470 SER C 193 CB OG REMARK 470 LYS C 203 CG CD CE NZ REMARK 470 LYS C 237 CE NZ REMARK 470 SER C 248 OG REMARK 470 GLU C 260 CG CD OE1 OE2 REMARK 470 GLU D 33 CG CD OE1 OE2 REMARK 470 LYS D 35 CD CE NZ REMARK 470 LYS D 64 CG CD CE NZ REMARK 470 LYS D 161 CG CD CE NZ REMARK 470 GLU D 164 CG CD OE1 OE2 REMARK 470 ALA D 166 CB REMARK 470 GLN D 180 CG CD OE1 NE2 REMARK 470 GLU D 227 CG CD OE1 OE2 REMARK 470 LYS D 246 CE NZ REMARK 470 LYS D 261 CG CD CE NZ REMARK 470 LYS D 315 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 1619 O HOH D 1629 5564 1.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 129 -31.45 -140.90 REMARK 500 VAL C 145 55.93 72.21 REMARK 500 TYR D 102 -19.62 -149.47 REMARK 500 LYS D 186 -143.80 -119.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP C 1262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD D 1319 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1O97 RELATED DB: PDB REMARK 900 WT PROTEIN REMARK 900 RELATED ID: 3CLR RELATED DB: PDB REMARK 900 R236A ETF REMARK 900 RELATED ID: 3CLS RELATED DB: PDB REMARK 900 R236C ETF REMARK 900 RELATED ID: 3CLT RELATED DB: PDB REMARK 900 R236E ETF DBREF 3CLU C 1 264 UNP P53570 ETFB_METME 1 264 DBREF 3CLU D 0 320 UNP P53571 ETFA_METME 1 321 SEQADV 3CLU LYS D 236 UNP P53571 ARG 237 ENGINEERED MUTATION SEQRES 1 C 264 MET LYS ILE LEU VAL ALA VAL LYS GLN THR ALA ALA LEU SEQRES 2 C 264 GLU GLU ASP PHE GLU ILE ARG GLU ASP GLY MET ASP VAL SEQRES 3 C 264 ASP GLU ASP PHE MET MET TYR ASP LEU ASN GLU TRP ASP SEQRES 4 C 264 ASP PHE SER LEU GLU GLU ALA MET LYS ILE LYS GLU SER SEQRES 5 C 264 SER ASP THR ASP VAL GLU VAL VAL VAL VAL SER VAL GLY SEQRES 6 C 264 PRO ASP ARG VAL ASP GLU SER LEU ARG LYS CYS LEU ALA SEQRES 7 C 264 LYS GLY ALA ASP ARG ALA VAL ARG VAL TRP ASP ASP ALA SEQRES 8 C 264 ALA GLU GLY SER ASP ALA ILE VAL VAL GLY ARG ILE LEU SEQRES 9 C 264 THR GLU VAL ILE LYS LYS GLU ALA PRO ASP MET VAL PHE SEQRES 10 C 264 ALA GLY VAL GLN SER SER ASP GLN ALA TYR ALA SER THR SEQRES 11 C 264 GLY ILE SER VAL ALA SER TYR LEU ASN TRP PRO HIS ALA SEQRES 12 C 264 ALA VAL VAL ALA ASP LEU GLN TYR LYS PRO GLY ASP ASN SEQRES 13 C 264 LYS ALA VAL ILE ARG ARG GLU LEU GLU GLY GLY MET LEU SEQRES 14 C 264 GLN GLU VAL GLU ILE ASN CYS PRO ALA VAL LEU THR ILE SEQRES 15 C 264 GLN LEU GLY ILE ASN LYS PRO ARG TYR ALA SER LEU ARG SEQRES 16 C 264 GLY ILE LYS GLN ALA ALA THR LYS PRO ILE GLU GLU VAL SEQRES 17 C 264 SER LEU ALA ASP ILE GLY LEU SER ALA ASN ASP VAL GLY SEQRES 18 C 264 ALA ALA GLN SER MET SER ARG VAL ARG ARG MET TYR ILE SEQRES 19 C 264 PRO GLU LYS GLY ARG ALA THR MET ILE GLU GLY THR ILE SEQRES 20 C 264 SER GLU GLN ALA ALA LYS ILE ILE GLN ILE ILE ASN GLU SEQRES 21 C 264 PHE LYS GLY ALA SEQRES 1 D 321 MET SER LYS ILE LEU VAL ILE ALA GLU HIS ARG ARG ASN SEQRES 2 D 321 ASP LEU ARG PRO VAL SER LEU GLU LEU ILE GLY ALA ALA SEQRES 3 D 321 ASN GLY LEU LYS LYS SER GLY GLU ASP LYS VAL VAL VAL SEQRES 4 D 321 ALA VAL ILE GLY SER GLN ALA ASP ALA PHE VAL PRO ALA SEQRES 5 D 321 LEU SER VAL ASN GLY VAL ASP GLU LEU VAL VAL VAL LYS SEQRES 6 D 321 GLY SER SER ILE ASP PHE ASP PRO ASP VAL PHE GLU ALA SEQRES 7 D 321 SER VAL SER ALA LEU ILE ALA ALA HIS ASN PRO SER VAL SEQRES 8 D 321 VAL LEU LEU PRO HIS SER VAL ASP SER LEU GLY TYR ALA SEQRES 9 D 321 SER SER LEU ALA SER LYS THR GLY TYR GLY PHE ALA THR SEQRES 10 D 321 ASP VAL TYR ILE VAL GLU TYR GLN GLY ASP GLU LEU VAL SEQRES 11 D 321 ALA THR ARG GLY GLY TYR ASN GLN LYS VAL ASN VAL GLU SEQRES 12 D 321 VAL ASP PHE PRO GLY LYS SER THR VAL VAL LEU THR ILE SEQRES 13 D 321 ARG PRO SER VAL PHE LYS PRO LEU GLU GLY ALA GLY SER SEQRES 14 D 321 PRO VAL VAL SER ASN VAL ASP ALA PRO SER VAL GLN SER SEQRES 15 D 321 ARG SER GLN ASN LYS ASP TYR VAL GLU VAL GLY GLY GLY SEQRES 16 D 321 ASN ASP ILE ASP ILE THR THR VAL ASP PHE ILE MET SER SEQRES 17 D 321 ILE GLY ARG GLY ILE GLY GLU GLU THR ASN VAL GLU GLN SEQRES 18 D 321 PHE ARG GLU LEU ALA ASP GLU ALA GLY ALA THR LEU CYS SEQRES 19 D 321 CYS SER LYS PRO ILE ALA ASP ALA GLY TRP LEU PRO LYS SEQRES 20 D 321 SER ARG GLN VAL GLY GLN SER GLY LYS VAL VAL GLY SER SEQRES 21 D 321 CYS LYS LEU TYR VAL ALA MET GLY ILE SER GLY SER ILE SEQRES 22 D 321 GLN HIS MET ALA GLY MET LYS HIS VAL PRO THR ILE ILE SEQRES 23 D 321 ALA VAL ASN THR ASP PRO GLY ALA SER ILE PHE THR ILE SEQRES 24 D 321 ALA LYS TYR GLY ILE VAL ALA ASP ILE PHE ASP ILE GLU SEQRES 25 D 321 GLU GLU LEU LYS ALA GLN LEU ALA ALA HET AMP C1262 23 HET FAD D1319 53 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 FAD C27 H33 N9 O15 P2 FORMUL 5 HOH *544(H2 O) HELIX 1 1 ASP C 27 ASP C 29 5 3 HELIX 2 2 ASN C 36 SER C 53 1 18 HELIX 3 3 ARG C 68 LYS C 79 1 12 HELIX 4 4 ASP C 89 GLU C 93 5 5 HELIX 5 5 ASP C 96 ALA C 112 1 17 HELIX 6 6 SER C 129 ASN C 139 1 11 HELIX 7 7 LEU C 210 GLY C 214 5 5 HELIX 8 8 SER C 216 VAL C 220 5 5 HELIX 9 9 GLY C 221 SER C 225 5 5 HELIX 10 10 THR C 246 PHE C 261 1 16 HELIX 11 11 PRO D 16 LYS D 29 1 14 HELIX 12 12 GLN D 44 ALA D 47 5 4 HELIX 13 13 PHE D 48 SER D 53 1 6 HELIX 14 14 ASP D 71 ASN D 87 1 17 HELIX 15 15 SER D 96 GLY D 101 1 6 HELIX 16 16 TYR D 102 GLY D 111 1 10 HELIX 17 17 ASP D 198 VAL D 202 5 5 HELIX 18 18 ARG D 210 GLY D 213 5 4 HELIX 19 19 GLU D 214 THR D 216 5 3 HELIX 20 20 ASN D 217 GLY D 229 1 13 HELIX 21 21 SER D 235 ALA D 241 1 7 HELIX 22 22 PRO D 245 GLN D 249 5 5 HELIX 23 23 SER D 271 ALA D 276 1 6 HELIX 24 24 ALA D 293 ILE D 298 5 6 HELIX 25 25 ASP D 306 ALA D 319 1 14 SHEET 1 A10 GLU C 206 VAL C 208 0 SHEET 2 A10 ARG C 83 VAL C 87 1 N ALA C 84 O GLU C 206 SHEET 3 A10 GLU C 58 VAL C 64 1 N SER C 63 O VAL C 87 SHEET 4 A10 LYS C 2 ALA C 6 1 N VAL C 5 O VAL C 60 SHEET 5 A10 MET C 115 GLY C 119 1 O PHE C 117 N LEU C 4 SHEET 6 A10 VAL C 179 ILE C 182 1 O ILE C 182 N ALA C 118 SHEET 7 A10 HIS C 142 GLN C 150 1 N VAL C 146 O THR C 181 SHEET 8 A10 LYS C 157 GLU C 163 -1 O VAL C 159 N GLN C 150 SHEET 9 A10 LEU C 169 ASN C 175 -1 O ILE C 174 N ALA C 158 SHEET 10 A10 SER D 183 VAL D 189 -1 O LYS D 186 N GLU C 171 SHEET 1 B 2 GLN C 9 LEU C 13 0 SHEET 2 B 2 MET C 31 LEU C 35 -1 O MET C 32 N ALA C 12 SHEET 1 C 4 ARG C 228 TYR C 233 0 SHEET 2 C 4 VAL D 139 ASP D 144 -1 O GLU D 142 N ARG C 230 SHEET 3 C 4 GLU D 127 GLY D 134 -1 N ALA D 130 O VAL D 143 SHEET 4 C 4 ILE D 120 GLN D 124 -1 N GLU D 122 O VAL D 129 SHEET 1 D 6 THR C 241 MET C 242 0 SHEET 2 D 6 TYR D 301 ILE D 303 1 O GLY D 302 N THR C 241 SHEET 3 D 6 THR D 283 VAL D 287 1 N ALA D 286 O ILE D 303 SHEET 4 D 6 LEU D 262 MET D 266 1 N ALA D 265 O ILE D 285 SHEET 5 D 6 PHE D 204 ILE D 208 1 N SER D 207 O VAL D 264 SHEET 6 D 6 THR D 231 CYS D 234 1 O THR D 231 N PHE D 204 SHEET 1 E 7 GLY D 113 VAL D 118 0 SHEET 2 E 7 VAL D 151 ILE D 155 1 O VAL D 152 N GLY D 113 SHEET 3 E 7 VAL D 90 PRO D 94 1 N LEU D 93 O ILE D 155 SHEET 4 E 7 LYS D 2 ILE D 6 1 N LEU D 4 O LEU D 92 SHEET 5 E 7 LYS D 35 ILE D 41 1 O VAL D 37 N VAL D 5 SHEET 6 E 7 GLU D 59 LYS D 64 1 O VAL D 61 N VAL D 38 SHEET 7 E 7 VAL D 170 ASP D 175 1 O SER D 172 N VAL D 62 SHEET 1 F 2 HIS D 9 ARG D 10 0 SHEET 2 F 2 ASP D 13 LEU D 14 -1 O ASP D 13 N ARG D 10 CISPEP 1 CYS C 176 PRO C 177 0 2.64 SITE 1 AC1 13 ALA C 6 LYS C 8 ASN C 36 ASP C 39 SITE 2 AC1 13 SER C 63 ALA C 118 GLY C 119 GLN C 121 SITE 3 AC1 13 SER C 122 TYR C 127 ALA C 128 SER C 129 SITE 4 AC1 13 THR C 130 SITE 1 AC2 26 GLN C 121 GLN C 183 LEU C 184 GLY D 209 SITE 2 AC2 26 ARG D 210 GLY D 211 SER D 235 LYS D 236 SITE 3 AC2 26 PRO D 237 GLN D 249 GLY D 251 GLN D 252 SITE 4 AC2 26 SER D 253 GLY D 254 GLY D 267 ILE D 268 SITE 5 AC2 26 SER D 269 SER D 271 GLN D 273 HIS D 274 SITE 6 AC2 26 ASN D 288 THR D 289 ASP D 290 ALA D 305 SITE 7 AC2 26 ASP D 306 ILE D 307 CRYST1 116.482 116.482 84.281 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008585 0.004957 0.000000 0.00000 SCALE2 0.000000 0.009913 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011865 0.00000