data_3CMY # _entry.id 3CMY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3CMY pdb_00003cmy 10.2210/pdb3cmy/pdb NDB PD1100 ? ? RCSB RCSB046969 ? ? WWPDB D_1000046969 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-02-17 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 4 'Structure model' 1 3 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3CMY _pdbx_database_status.recvd_initial_deposition_date 2008-03-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Birrane, G.' 1 'Ladias, J.A.A.' 2 'Soni, A.' 3 # _citation.id primary _citation.title 'Structural Basis for DNA Recognition by the Human PAX3 Homeodomain.' _citation.journal_abbrev Biochemistry _citation.journal_volume 48 _citation.page_first 1148 _citation.page_last 1155 _citation.year 2009 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19199574 _citation.pdbx_database_id_DOI 10.1021/bi802052y # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Birrane, G.' 1 ? primary 'Soni, A.' 2 ? primary 'Ladias, J.A.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Paired box protein Pax-3' 7540.420 1 ? ? 'HOMEODOMAIN (UNP residues 219-278)' ? 2 polymer syn "5'-D(*DAP*DCP*DAP*DTP*DAP*DAP*DP*DCP*DGP*DAP*DTP*DTP*DAP*DC)-3'" 4247.805 1 ? ? ? ? 3 polymer syn "5'-D(*DTP*DGP*DTP*DAP*DAP*DTP*DCP*DGP*DAP*DTP*DTP*DAP*DTP*DG)-3'" 4309.826 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 5 water nat water 18.015 84 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name HUP2 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA GQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA A ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DA)(DT)(DA)(DA)(DT)(DC)(DG)(DA)(DT)(DT)(DA)(DC)' ACATAATCGATTAC B ? 3 polydeoxyribonucleotide no no '(DT)(DG)(DT)(DA)(DA)(DT)(DC)(DG)(DA)(DT)(DT)(DA)(DT)(DG)' TGTAATCGATTATG C ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 1,2-ETHANEDIOL EDO 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 ARG n 1 4 ARG n 1 5 SER n 1 6 ARG n 1 7 THR n 1 8 THR n 1 9 PHE n 1 10 THR n 1 11 ALA n 1 12 GLU n 1 13 GLN n 1 14 LEU n 1 15 GLU n 1 16 GLU n 1 17 LEU n 1 18 GLU n 1 19 ARG n 1 20 ALA n 1 21 PHE n 1 22 GLU n 1 23 ARG n 1 24 THR n 1 25 HIS n 1 26 TYR n 1 27 PRO n 1 28 ASP n 1 29 ILE n 1 30 TYR n 1 31 THR n 1 32 ARG n 1 33 GLU n 1 34 GLU n 1 35 LEU n 1 36 ALA n 1 37 GLN n 1 38 ARG n 1 39 ALA n 1 40 LYS n 1 41 LEU n 1 42 THR n 1 43 GLU n 1 44 ALA n 1 45 ARG n 1 46 VAL n 1 47 GLN n 1 48 VAL n 1 49 TRP n 1 50 PHE n 1 51 SER n 1 52 ASN n 1 53 ARG n 1 54 ARG n 1 55 ALA n 1 56 ARG n 1 57 TRP n 1 58 ARG n 1 59 LYS n 1 60 GLN n 1 61 ALA n 2 1 DA n 2 2 DC n 2 3 DA n 2 4 DT n 2 5 DA n 2 6 DA n 2 7 DT n 2 8 DC n 2 9 DG n 2 10 DA n 2 11 DT n 2 12 DT n 2 13 DA n 2 14 DC n 3 1 DT n 3 2 DG n 3 3 DT n 3 4 DA n 3 5 DA n 3 6 DT n 3 7 DC n 3 8 DG n 3 9 DA n 3 10 DT n 3 11 DT n 3 12 DA n 3 13 DT n 3 14 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PAX3 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain C41 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET-6H _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 GLN 2 1 1 GLN GLN A . n A 1 3 ARG 3 2 2 ARG ARG A . n A 1 4 ARG 4 3 3 ARG ARG A . n A 1 5 SER 5 4 4 SER SER A . n A 1 6 ARG 6 5 5 ARG ARG A . n A 1 7 THR 7 6 6 THR THR A . n A 1 8 THR 8 7 7 THR THR A . n A 1 9 PHE 9 8 8 PHE PHE A . n A 1 10 THR 10 9 9 THR THR A . n A 1 11 ALA 11 10 10 ALA ALA A . n A 1 12 GLU 12 11 11 GLU GLU A . n A 1 13 GLN 13 12 12 GLN GLN A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 GLU 15 14 14 GLU GLU A . n A 1 16 GLU 16 15 15 GLU GLU A . n A 1 17 LEU 17 16 16 LEU LEU A . n A 1 18 GLU 18 17 17 GLU GLU A . n A 1 19 ARG 19 18 18 ARG ARG A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 PHE 21 20 20 PHE PHE A . n A 1 22 GLU 22 21 21 GLU GLU A . n A 1 23 ARG 23 22 22 ARG ARG A . n A 1 24 THR 24 23 23 THR THR A . n A 1 25 HIS 25 24 24 HIS HIS A . n A 1 26 TYR 26 25 25 TYR TYR A . n A 1 27 PRO 27 26 26 PRO PRO A . n A 1 28 ASP 28 27 27 ASP ASP A . n A 1 29 ILE 29 28 28 ILE ILE A . n A 1 30 TYR 30 29 29 TYR TYR A . n A 1 31 THR 31 30 30 THR THR A . n A 1 32 ARG 32 31 31 ARG ARG A . n A 1 33 GLU 33 32 32 GLU GLU A . n A 1 34 GLU 34 33 33 GLU GLU A . n A 1 35 LEU 35 34 34 LEU LEU A . n A 1 36 ALA 36 35 35 ALA ALA A . n A 1 37 GLN 37 36 36 GLN GLN A . n A 1 38 ARG 38 37 37 ARG ARG A . n A 1 39 ALA 39 38 38 ALA ALA A . n A 1 40 LYS 40 39 39 LYS LYS A . n A 1 41 LEU 41 40 40 LEU LEU A . n A 1 42 THR 42 41 41 THR THR A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 ALA 44 43 43 ALA ALA A . n A 1 45 ARG 45 44 44 ARG ARG A . n A 1 46 VAL 46 45 45 VAL VAL A . n A 1 47 GLN 47 46 46 GLN GLN A . n A 1 48 VAL 48 47 47 VAL VAL A . n A 1 49 TRP 49 48 48 TRP TRP A . n A 1 50 PHE 50 49 49 PHE PHE A . n A 1 51 SER 51 50 50 SER SER A . n A 1 52 ASN 52 51 51 ASN ASN A . n A 1 53 ARG 53 52 52 ARG ARG A . n A 1 54 ARG 54 53 53 ARG ARG A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 ARG 56 55 55 ARG ARG A . n A 1 57 TRP 57 56 56 TRP TRP A . n A 1 58 ARG 58 57 57 ARG ARG A . n A 1 59 LYS 59 58 58 LYS LYS A . n A 1 60 GLN 60 59 59 GLN GLN A . n A 1 61 ALA 61 60 ? ? ? A . n B 2 1 DA 1 1 1 DA A B . n B 2 2 DC 2 2 2 DC C B . n B 2 3 DA 3 3 3 DA A B . n B 2 4 DT 4 4 4 DT T B . n B 2 5 DA 5 5 5 DA A B . n B 2 6 DA 6 6 6 DA A B . n B 2 7 DT 7 7 7 DT T B . n B 2 8 DC 8 8 8 DC C B . n B 2 9 DG 9 9 ? ? ? B . n B 2 10 DA 10 10 ? ? ? B . n B 2 11 DT 11 11 ? ? ? B . n B 2 12 DT 12 12 ? ? ? B . n B 2 13 DA 13 13 ? ? ? B . n B 2 14 DC 14 14 ? ? ? B . n C 3 1 DT 1 1 ? ? ? C . n C 3 2 DG 2 2 ? ? ? C . n C 3 3 DT 3 3 ? ? ? C . n C 3 4 DA 4 4 ? ? ? C . n C 3 5 DA 5 5 ? ? ? C . n C 3 6 DT 6 6 ? ? ? C . n C 3 7 DC 7 7 ? ? ? C . n C 3 8 DG 8 8 8 DG G C . n C 3 9 DA 9 9 9 DA A C . n C 3 10 DT 10 10 10 DT T C . n C 3 11 DT 11 11 11 DT T C . n C 3 12 DA 12 12 12 DA A C . n C 3 13 DT 13 13 13 DT T C . n C 3 14 DG 14 14 14 DG G C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO 1 61 1 EDO EDO A . E 5 HOH 1 62 2 HOH HOH A . E 5 HOH 2 63 3 HOH HOH A . E 5 HOH 3 64 20 HOH HOH A . E 5 HOH 4 65 27 HOH HOH A . E 5 HOH 5 66 29 HOH HOH A . E 5 HOH 6 67 31 HOH HOH A . E 5 HOH 7 68 32 HOH HOH A . E 5 HOH 8 69 33 HOH HOH A . E 5 HOH 9 70 34 HOH HOH A . E 5 HOH 10 71 35 HOH HOH A . E 5 HOH 11 72 36 HOH HOH A . E 5 HOH 12 73 37 HOH HOH A . E 5 HOH 13 74 38 HOH HOH A . E 5 HOH 14 75 39 HOH HOH A . E 5 HOH 15 76 40 HOH HOH A . E 5 HOH 16 77 41 HOH HOH A . E 5 HOH 17 78 42 HOH HOH A . E 5 HOH 18 79 43 HOH HOH A . E 5 HOH 19 80 44 HOH HOH A . E 5 HOH 20 81 45 HOH HOH A . E 5 HOH 21 82 47 HOH HOH A . E 5 HOH 22 83 48 HOH HOH A . E 5 HOH 23 84 49 HOH HOH A . E 5 HOH 24 85 50 HOH HOH A . E 5 HOH 25 86 51 HOH HOH A . E 5 HOH 26 87 52 HOH HOH A . E 5 HOH 27 88 53 HOH HOH A . E 5 HOH 28 89 54 HOH HOH A . E 5 HOH 29 90 56 HOH HOH A . E 5 HOH 30 91 57 HOH HOH A . E 5 HOH 31 93 59 HOH HOH A . E 5 HOH 32 94 60 HOH HOH A . E 5 HOH 33 95 61 HOH HOH A . E 5 HOH 34 96 62 HOH HOH A . E 5 HOH 35 97 64 HOH HOH A . E 5 HOH 36 98 65 HOH HOH A . E 5 HOH 37 99 66 HOH HOH A . E 5 HOH 38 100 68 HOH HOH A . E 5 HOH 39 101 69 HOH HOH A . E 5 HOH 40 102 70 HOH HOH A . E 5 HOH 41 103 72 HOH HOH A . E 5 HOH 42 104 73 HOH HOH A . E 5 HOH 43 105 74 HOH HOH A . E 5 HOH 44 106 75 HOH HOH A . E 5 HOH 45 107 77 HOH HOH A . E 5 HOH 46 108 79 HOH HOH A . E 5 HOH 47 109 80 HOH HOH A . E 5 HOH 48 110 81 HOH HOH A . E 5 HOH 49 111 82 HOH HOH A . E 5 HOH 50 112 83 HOH HOH A . E 5 HOH 51 113 84 HOH HOH A . F 5 HOH 1 15 1 HOH HOH B . F 5 HOH 2 16 4 HOH HOH B . F 5 HOH 3 17 6 HOH HOH B . F 5 HOH 4 18 7 HOH HOH B . F 5 HOH 5 19 9 HOH HOH B . F 5 HOH 6 20 12 HOH HOH B . F 5 HOH 7 21 13 HOH HOH B . F 5 HOH 8 22 14 HOH HOH B . F 5 HOH 9 23 15 HOH HOH B . F 5 HOH 10 24 21 HOH HOH B . F 5 HOH 11 25 22 HOH HOH B . F 5 HOH 12 26 24 HOH HOH B . F 5 HOH 13 27 25 HOH HOH B . F 5 HOH 14 28 30 HOH HOH B . F 5 HOH 15 29 63 HOH HOH B . F 5 HOH 16 30 67 HOH HOH B . F 5 HOH 17 31 76 HOH HOH B . F 5 HOH 18 32 78 HOH HOH B . F 5 HOH 19 92 58 HOH HOH B . G 5 HOH 1 15 5 HOH HOH C . G 5 HOH 2 16 8 HOH HOH C . G 5 HOH 3 17 10 HOH HOH C . G 5 HOH 4 18 11 HOH HOH C . G 5 HOH 5 19 16 HOH HOH C . G 5 HOH 6 20 17 HOH HOH C . G 5 HOH 7 21 18 HOH HOH C . G 5 HOH 8 22 19 HOH HOH C . G 5 HOH 9 23 23 HOH HOH C . G 5 HOH 10 24 26 HOH HOH C . G 5 HOH 11 25 28 HOH HOH C . G 5 HOH 12 26 46 HOH HOH C . G 5 HOH 13 27 55 HOH HOH C . G 5 HOH 14 28 71 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 58 ? CG ? A LYS 59 CG 2 1 Y 1 A LYS 58 ? CD ? A LYS 59 CD 3 1 Y 1 A LYS 58 ? CE ? A LYS 59 CE 4 1 Y 1 A LYS 58 ? NZ ? A LYS 59 NZ 5 2 Y 1 A LYS 58 ? CG ? A LYS 59 CG 6 2 Y 1 A LYS 58 ? CD ? A LYS 59 CD 7 2 Y 1 A LYS 58 ? CE ? A LYS 59 CE 8 2 Y 1 A LYS 58 ? NZ ? A LYS 59 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.4.0069 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 MOLREP phasing . ? 5 # _cell.entry_id 3CMY _cell.length_a 43.325 _cell.length_b 62.243 _cell.length_c 92.556 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3CMY _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3CMY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.94 _exptl_crystal.density_percent_sol 36.53 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.6 _exptl_crystal_grow.pdbx_details ;19-22% polyethylene glycol 8000, 100 mM ammonium sulphate, 20mM magnesium chloride, 15% 2-methyl-2,4-pentanediol, 50 mM 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'polyethylene glycol 8000' ? ? ? 1 2 1 'ammonium sulphate' ? ? ? 1 3 1 'magnesium chloride' ? ? ? 1 4 1 2-methyl-2,4-pentanediol ? ? ? 1 5 1 '4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid' ? ? ? 1 6 1 H2O ? ? ? 1 7 2 'polyethylene glycol 8000' ? ? ? 1 8 2 'ammonium sulphate' ? ? ? 1 9 2 'magnesium chloride' ? ? ? 1 10 2 2-methyl-2,4-pentanediol ? ? ? 1 11 2 '4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid' ? ? ? 1 12 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2008-01-25 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12B' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 3CMY _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 1.95 _reflns.d_resolution_low 50 _reflns.number_all ? _reflns.number_obs 9726 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.064 _reflns.pdbx_netI_over_sigmaI 27 _reflns.B_iso_Wilson_estimate 38.3 _reflns.pdbx_redundancy 7.6 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.02 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.584 _reflns_shell.meanI_over_sigI_obs 3 _reflns_shell.pdbx_redundancy 6.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 966 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3CMY _refine.ls_number_reflns_obs 8971 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.50 _refine.ls_d_res_high 1.95 _refine.ls_percent_reflns_obs 99.72 _refine.ls_R_factor_obs 0.17422 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17243 _refine.ls_R_factor_R_free 0.21266 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 452 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.971 _refine.correlation_coeff_Fo_to_Fc_free 0.960 _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model IFJL _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.152 _refine.pdbx_overall_ESU_R_Free 0.140 _refine.overall_SU_ML 0.102 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 523 _refine_hist.pdbx_number_atoms_nucleic_acid 305 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 84 _refine_hist.number_atoms_total 916 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 29.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.021 ? 958 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 587 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.533 2.410 ? 1365 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.427 3.000 ? 1405 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.854 5.000 ? 63 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 24.238 20.811 ? 37 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.415 15.000 ? 101 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11.813 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 809 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 183 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.950 _refine_ls_shell.d_res_low 2.001 _refine_ls_shell.number_reflns_R_work 662 _refine_ls_shell.R_factor_R_work 0.256 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.31 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 34 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3CMY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3CMY _struct.title 'Structure of a homeodomain in complex with DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3CMY _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR/DNA' _struct_keywords.text 'DNA-BINDING PROTEIN, DNA, TRANSCRIPTION REGULATION, TRANSCRIPTION REGULATOR-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PAX3_HUMAN P23760 1 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQA 219 ? 2 PDB 3CMY 3CMY 2 ? ? ? 3 PDB 3CMY 3CMY 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3CMY A 2 ? 61 ? P23760 219 ? 278 ? 1 60 2 2 3CMY B 1 ? 14 ? 3CMY 1 ? 14 ? 1 14 3 3 3CMY C 1 ? 14 ? 3CMY 1 ? 14 ? 1 14 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3CMY _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P23760 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 10 ? THR A 24 ? THR A 9 THR A 23 1 ? 15 HELX_P HELX_P2 2 ASP A 28 ? LYS A 40 ? ASP A 27 LYS A 39 1 ? 13 HELX_P HELX_P3 3 THR A 42 ? GLN A 60 ? THR A 41 GLN A 59 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DC 2 N3 A ? ? 1_555 C DG 14 N1 A ? B DC 2 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 2 N4 A ? ? 1_555 C DG 14 O6 A ? B DC 2 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 2 O2 A ? ? 1_555 C DG 14 N2 A ? B DC 2 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DA 3 N1 A ? ? 1_555 C DT 13 N3 A ? B DA 3 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DA 3 N6 A ? ? 1_555 C DT 13 O4 A ? B DA 3 C DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DT 4 N3 A ? ? 1_555 C DA 12 N1 A ? B DT 4 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DT 4 O4 A ? ? 1_555 C DA 12 N6 A ? B DT 4 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 5 N1 A ? ? 1_555 C DT 11 N3 A ? B DA 5 C DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DA 5 N6 A ? ? 1_555 C DT 11 O4 A ? B DA 5 C DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 6 N1 A ? ? 1_555 C DT 10 N3 A ? B DA 6 C DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 6 N6 A ? ? 1_555 C DT 10 O4 A ? B DA 6 C DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DT 7 N3 A ? ? 1_555 C DA 9 N1 A ? B DT 7 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DT 7 O4 A ? ? 1_555 C DA 9 N6 A ? B DT 7 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 8 N3 A ? ? 1_555 C DG 8 N1 A ? B DC 8 C DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 8 N4 A ? ? 1_555 C DG 8 O6 A ? B DC 8 C DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 8 O2 A ? ? 1_555 C DG 8 N2 A ? B DC 8 C DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id EDO _struct_site.pdbx_auth_seq_id 61 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE EDO A 61' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id SER _struct_site_gen.label_asym_id A _struct_site_gen.label_seq_id 5 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id SER _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 4 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 4_555 _struct_site_gen.details ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" B DA 3 ? A "C3'" B DA 3 ? A 1.379 1.419 -0.040 0.006 N 2 1 "O3'" B DC 8 ? A "C3'" B DC 8 ? A 1.376 1.419 -0.043 0.006 N 3 2 "O3'" C DC 7 ? C "C3'" C DC 7 ? C 1.376 1.419 -0.043 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DA 1 ? A "C4'" B DA 1 ? A "C3'" B DA 1 ? A 100.82 104.50 -3.68 0.40 N 2 1 "O4'" B DC 2 ? A "C1'" B DC 2 ? A N1 B DC 2 ? A 110.99 108.30 2.69 0.30 N 3 1 "O4'" B DT 4 ? A "C1'" B DT 4 ? A N1 B DT 4 ? A 111.53 108.30 3.23 0.30 N 4 1 "C3'" B DC 8 ? A "C2'" B DC 8 ? A "C1'" B DC 8 ? A 97.22 102.40 -5.18 0.80 N 5 2 "O4'" C DT 1 ? C "C4'" C DT 1 ? C "C3'" C DT 1 ? C 102.03 104.50 -2.47 0.40 N 6 2 "C4'" C DT 1 ? C "C3'" C DT 1 ? C "C2'" C DT 1 ? C 97.78 102.20 -4.42 0.70 N 7 2 "O4'" C DT 3 ? C "C1'" C DT 3 ? C N1 C DT 3 ? C 111.53 108.30 3.23 0.30 N 8 2 "C3'" C DC 7 ? C "C2'" C DC 7 ? C "C1'" C DC 7 ? C 97.22 102.40 -5.18 0.80 N # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 7.3670 9.2750 8.3400 -0.2181 -0.1433 -0.0653 -0.0267 -0.0545 -0.0226 3.3360 4.3758 4.5006 0.1075 -0.1828 -0.6529 -0.0364 -0.0685 0.1049 -0.2878 0.3458 -0.5096 0.3817 -0.3462 0.3716 'X-RAY DIFFRACTION' 2 ? refined 13.8860 10.6130 0.8950 -0.1016 0.0074 0.0785 -0.0878 0.0182 -0.0174 6.0055 8.8990 5.4361 -0.1688 -0.3037 -0.9226 0.0356 -0.0170 -0.0186 -0.0266 0.2326 -0.7513 -0.2976 -0.3772 0.7275 'X-RAY DIFFRACTION' 3 ? refined 0.2270 10.1860 7.5480 -0.0101 -0.0300 0.0246 -0.0072 -0.0432 -0.0079 8.4047 9.1867 4.9928 -5.3761 -5.0376 1.6567 -0.0242 0.0566 -0.0324 0.0562 0.2232 0.0968 0.2615 -0.2630 -0.0888 'X-RAY DIFFRACTION' 4 ? refined -0.4500 -0.1500 11.8350 -0.1140 -0.1322 -0.1483 0.0137 -0.0133 0.0294 6.2476 3.0508 9.0442 -1.5436 -0.2046 -1.8263 -0.1101 0.2212 -0.1110 -0.3430 0.0079 -0.0529 0.4566 -0.0607 -0.1377 'X-RAY DIFFRACTION' 5 ? refined -5.1750 -1.4350 9.7860 -0.1246 -0.1385 -0.1664 -0.0530 0.0053 -0.0415 9.3775 7.0062 5.8945 -3.9516 3.1587 -3.3207 -0.0072 0.1504 -0.1432 -0.3744 -0.3945 0.4029 0.4223 0.4222 -0.5722 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 28 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 29 A 42 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 43 A 59 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 B 1 B 8 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 C 8 C 14 ? . . . . ? # _pdbx_entry_details.entry_id 3CMY _pdbx_entry_details.compound_details ;THE DNA CAN PACK IN TWO ORIENTATIONS WHICH ARE NEARLY EQUIVALENT. ONLY 1/2 OF THE CRYSTALLIZED SEQUENCE IS PRESENT IN THE COORDINATES. THE SECOND PART IS RELATED BY CRYSTAL SYMMETRY. THERE IS MIXED ELECTRON DENSITY OUTSIDE THE PALINDROMIC REGION BECAUSE THE TWOFOLD CRYSTALLOGRAPHIC AXIS COINCIDES WITH THE PSEUDO-TWOFOLD AXIS OF THE DNA. THE ENTRY IS PROCESSED AS 2 MODELS CORRESPONDING TO THE 2 ORIENTATIONS OF THE DNA MOLECULE. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 60 ? A ALA 61 2 1 Y 1 B DG 9 ? B DG 9 3 1 Y 1 B DA 10 ? B DA 10 4 1 Y 1 B DT 11 ? B DT 11 5 1 Y 1 B DT 12 ? B DT 12 6 1 Y 1 B DA 13 ? B DA 13 7 1 Y 1 B DC 14 ? B DC 14 8 1 Y 1 C DT 1 ? C DT 1 9 1 Y 1 C DG 2 ? C DG 2 10 1 Y 1 C DT 3 ? C DT 3 11 1 Y 1 C DA 4 ? C DA 4 12 1 Y 1 C DA 5 ? C DA 5 13 1 Y 1 C DT 6 ? C DT 6 14 1 Y 1 C DC 7 ? C DC 7 15 2 Y 1 A ALA 60 ? A ALA 61 16 2 Y 1 B DA 1 ? B DA 1 17 2 Y 1 B DC 2 ? B DC 2 18 2 Y 1 B DA 3 ? B DA 3 19 2 Y 1 B DT 4 ? B DT 4 20 2 Y 1 B DA 5 ? B DA 5 21 2 Y 1 B DA 6 ? B DA 6 22 2 Y 1 B DT 7 ? B DT 7 23 2 Y 1 B DC 8 ? B DC 8 24 2 Y 1 C DG 8 ? C DG 8 25 2 Y 1 C DA 9 ? C DA 9 26 2 Y 1 C DT 10 ? C DT 10 27 2 Y 1 C DT 11 ? C DT 11 28 2 Y 1 C DA 12 ? C DA 12 29 2 Y 1 C DT 13 ? C DT 13 30 2 Y 1 C DG 14 ? C DG 14 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 EDO C1 C N N 217 EDO O1 O N N 218 EDO C2 C N N 219 EDO O2 O N N 220 EDO H11 H N N 221 EDO H12 H N N 222 EDO HO1 H N N 223 EDO H21 H N N 224 EDO H22 H N N 225 EDO HO2 H N N 226 GLN N N N N 227 GLN CA C N S 228 GLN C C N N 229 GLN O O N N 230 GLN CB C N N 231 GLN CG C N N 232 GLN CD C N N 233 GLN OE1 O N N 234 GLN NE2 N N N 235 GLN OXT O N N 236 GLN H H N N 237 GLN H2 H N N 238 GLN HA H N N 239 GLN HB2 H N N 240 GLN HB3 H N N 241 GLN HG2 H N N 242 GLN HG3 H N N 243 GLN HE21 H N N 244 GLN HE22 H N N 245 GLN HXT H N N 246 GLU N N N N 247 GLU CA C N S 248 GLU C C N N 249 GLU O O N N 250 GLU CB C N N 251 GLU CG C N N 252 GLU CD C N N 253 GLU OE1 O N N 254 GLU OE2 O N N 255 GLU OXT O N N 256 GLU H H N N 257 GLU H2 H N N 258 GLU HA H N N 259 GLU HB2 H N N 260 GLU HB3 H N N 261 GLU HG2 H N N 262 GLU HG3 H N N 263 GLU HE2 H N N 264 GLU HXT H N N 265 GLY N N N N 266 GLY CA C N N 267 GLY C C N N 268 GLY O O N N 269 GLY OXT O N N 270 GLY H H N N 271 GLY H2 H N N 272 GLY HA2 H N N 273 GLY HA3 H N N 274 GLY HXT H N N 275 HIS N N N N 276 HIS CA C N S 277 HIS C C N N 278 HIS O O N N 279 HIS CB C N N 280 HIS CG C Y N 281 HIS ND1 N Y N 282 HIS CD2 C Y N 283 HIS CE1 C Y N 284 HIS NE2 N Y N 285 HIS OXT O N N 286 HIS H H N N 287 HIS H2 H N N 288 HIS HA H N N 289 HIS HB2 H N N 290 HIS HB3 H N N 291 HIS HD1 H N N 292 HIS HD2 H N N 293 HIS HE1 H N N 294 HIS HE2 H N N 295 HIS HXT H N N 296 HOH O O N N 297 HOH H1 H N N 298 HOH H2 H N N 299 ILE N N N N 300 ILE CA C N S 301 ILE C C N N 302 ILE O O N N 303 ILE CB C N S 304 ILE CG1 C N N 305 ILE CG2 C N N 306 ILE CD1 C N N 307 ILE OXT O N N 308 ILE H H N N 309 ILE H2 H N N 310 ILE HA H N N 311 ILE HB H N N 312 ILE HG12 H N N 313 ILE HG13 H N N 314 ILE HG21 H N N 315 ILE HG22 H N N 316 ILE HG23 H N N 317 ILE HD11 H N N 318 ILE HD12 H N N 319 ILE HD13 H N N 320 ILE HXT H N N 321 LEU N N N N 322 LEU CA C N S 323 LEU C C N N 324 LEU O O N N 325 LEU CB C N N 326 LEU CG C N N 327 LEU CD1 C N N 328 LEU CD2 C N N 329 LEU OXT O N N 330 LEU H H N N 331 LEU H2 H N N 332 LEU HA H N N 333 LEU HB2 H N N 334 LEU HB3 H N N 335 LEU HG H N N 336 LEU HD11 H N N 337 LEU HD12 H N N 338 LEU HD13 H N N 339 LEU HD21 H N N 340 LEU HD22 H N N 341 LEU HD23 H N N 342 LEU HXT H N N 343 LYS N N N N 344 LYS CA C N S 345 LYS C C N N 346 LYS O O N N 347 LYS CB C N N 348 LYS CG C N N 349 LYS CD C N N 350 LYS CE C N N 351 LYS NZ N N N 352 LYS OXT O N N 353 LYS H H N N 354 LYS H2 H N N 355 LYS HA H N N 356 LYS HB2 H N N 357 LYS HB3 H N N 358 LYS HG2 H N N 359 LYS HG3 H N N 360 LYS HD2 H N N 361 LYS HD3 H N N 362 LYS HE2 H N N 363 LYS HE3 H N N 364 LYS HZ1 H N N 365 LYS HZ2 H N N 366 LYS HZ3 H N N 367 LYS HXT H N N 368 PHE N N N N 369 PHE CA C N S 370 PHE C C N N 371 PHE O O N N 372 PHE CB C N N 373 PHE CG C Y N 374 PHE CD1 C Y N 375 PHE CD2 C Y N 376 PHE CE1 C Y N 377 PHE CE2 C Y N 378 PHE CZ C Y N 379 PHE OXT O N N 380 PHE H H N N 381 PHE H2 H N N 382 PHE HA H N N 383 PHE HB2 H N N 384 PHE HB3 H N N 385 PHE HD1 H N N 386 PHE HD2 H N N 387 PHE HE1 H N N 388 PHE HE2 H N N 389 PHE HZ H N N 390 PHE HXT H N N 391 PRO N N N N 392 PRO CA C N S 393 PRO C C N N 394 PRO O O N N 395 PRO CB C N N 396 PRO CG C N N 397 PRO CD C N N 398 PRO OXT O N N 399 PRO H H N N 400 PRO HA H N N 401 PRO HB2 H N N 402 PRO HB3 H N N 403 PRO HG2 H N N 404 PRO HG3 H N N 405 PRO HD2 H N N 406 PRO HD3 H N N 407 PRO HXT H N N 408 SER N N N N 409 SER CA C N S 410 SER C C N N 411 SER O O N N 412 SER CB C N N 413 SER OG O N N 414 SER OXT O N N 415 SER H H N N 416 SER H2 H N N 417 SER HA H N N 418 SER HB2 H N N 419 SER HB3 H N N 420 SER HG H N N 421 SER HXT H N N 422 THR N N N N 423 THR CA C N S 424 THR C C N N 425 THR O O N N 426 THR CB C N R 427 THR OG1 O N N 428 THR CG2 C N N 429 THR OXT O N N 430 THR H H N N 431 THR H2 H N N 432 THR HA H N N 433 THR HB H N N 434 THR HG1 H N N 435 THR HG21 H N N 436 THR HG22 H N N 437 THR HG23 H N N 438 THR HXT H N N 439 TRP N N N N 440 TRP CA C N S 441 TRP C C N N 442 TRP O O N N 443 TRP CB C N N 444 TRP CG C Y N 445 TRP CD1 C Y N 446 TRP CD2 C Y N 447 TRP NE1 N Y N 448 TRP CE2 C Y N 449 TRP CE3 C Y N 450 TRP CZ2 C Y N 451 TRP CZ3 C Y N 452 TRP CH2 C Y N 453 TRP OXT O N N 454 TRP H H N N 455 TRP H2 H N N 456 TRP HA H N N 457 TRP HB2 H N N 458 TRP HB3 H N N 459 TRP HD1 H N N 460 TRP HE1 H N N 461 TRP HE3 H N N 462 TRP HZ2 H N N 463 TRP HZ3 H N N 464 TRP HH2 H N N 465 TRP HXT H N N 466 TYR N N N N 467 TYR CA C N S 468 TYR C C N N 469 TYR O O N N 470 TYR CB C N N 471 TYR CG C Y N 472 TYR CD1 C Y N 473 TYR CD2 C Y N 474 TYR CE1 C Y N 475 TYR CE2 C Y N 476 TYR CZ C Y N 477 TYR OH O N N 478 TYR OXT O N N 479 TYR H H N N 480 TYR H2 H N N 481 TYR HA H N N 482 TYR HB2 H N N 483 TYR HB3 H N N 484 TYR HD1 H N N 485 TYR HD2 H N N 486 TYR HE1 H N N 487 TYR HE2 H N N 488 TYR HH H N N 489 TYR HXT H N N 490 VAL N N N N 491 VAL CA C N S 492 VAL C C N N 493 VAL O O N N 494 VAL CB C N N 495 VAL CG1 C N N 496 VAL CG2 C N N 497 VAL OXT O N N 498 VAL H H N N 499 VAL H2 H N N 500 VAL HA H N N 501 VAL HB H N N 502 VAL HG11 H N N 503 VAL HG12 H N N 504 VAL HG13 H N N 505 VAL HG21 H N N 506 VAL HG22 H N N 507 VAL HG23 H N N 508 VAL HXT H N N 509 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 EDO C1 O1 sing N N 219 EDO C1 C2 sing N N 220 EDO C1 H11 sing N N 221 EDO C1 H12 sing N N 222 EDO O1 HO1 sing N N 223 EDO C2 O2 sing N N 224 EDO C2 H21 sing N N 225 EDO C2 H22 sing N N 226 EDO O2 HO2 sing N N 227 GLN N CA sing N N 228 GLN N H sing N N 229 GLN N H2 sing N N 230 GLN CA C sing N N 231 GLN CA CB sing N N 232 GLN CA HA sing N N 233 GLN C O doub N N 234 GLN C OXT sing N N 235 GLN CB CG sing N N 236 GLN CB HB2 sing N N 237 GLN CB HB3 sing N N 238 GLN CG CD sing N N 239 GLN CG HG2 sing N N 240 GLN CG HG3 sing N N 241 GLN CD OE1 doub N N 242 GLN CD NE2 sing N N 243 GLN NE2 HE21 sing N N 244 GLN NE2 HE22 sing N N 245 GLN OXT HXT sing N N 246 GLU N CA sing N N 247 GLU N H sing N N 248 GLU N H2 sing N N 249 GLU CA C sing N N 250 GLU CA CB sing N N 251 GLU CA HA sing N N 252 GLU C O doub N N 253 GLU C OXT sing N N 254 GLU CB CG sing N N 255 GLU CB HB2 sing N N 256 GLU CB HB3 sing N N 257 GLU CG CD sing N N 258 GLU CG HG2 sing N N 259 GLU CG HG3 sing N N 260 GLU CD OE1 doub N N 261 GLU CD OE2 sing N N 262 GLU OE2 HE2 sing N N 263 GLU OXT HXT sing N N 264 GLY N CA sing N N 265 GLY N H sing N N 266 GLY N H2 sing N N 267 GLY CA C sing N N 268 GLY CA HA2 sing N N 269 GLY CA HA3 sing N N 270 GLY C O doub N N 271 GLY C OXT sing N N 272 GLY OXT HXT sing N N 273 HIS N CA sing N N 274 HIS N H sing N N 275 HIS N H2 sing N N 276 HIS CA C sing N N 277 HIS CA CB sing N N 278 HIS CA HA sing N N 279 HIS C O doub N N 280 HIS C OXT sing N N 281 HIS CB CG sing N N 282 HIS CB HB2 sing N N 283 HIS CB HB3 sing N N 284 HIS CG ND1 sing Y N 285 HIS CG CD2 doub Y N 286 HIS ND1 CE1 doub Y N 287 HIS ND1 HD1 sing N N 288 HIS CD2 NE2 sing Y N 289 HIS CD2 HD2 sing N N 290 HIS CE1 NE2 sing Y N 291 HIS CE1 HE1 sing N N 292 HIS NE2 HE2 sing N N 293 HIS OXT HXT sing N N 294 HOH O H1 sing N N 295 HOH O H2 sing N N 296 ILE N CA sing N N 297 ILE N H sing N N 298 ILE N H2 sing N N 299 ILE CA C sing N N 300 ILE CA CB sing N N 301 ILE CA HA sing N N 302 ILE C O doub N N 303 ILE C OXT sing N N 304 ILE CB CG1 sing N N 305 ILE CB CG2 sing N N 306 ILE CB HB sing N N 307 ILE CG1 CD1 sing N N 308 ILE CG1 HG12 sing N N 309 ILE CG1 HG13 sing N N 310 ILE CG2 HG21 sing N N 311 ILE CG2 HG22 sing N N 312 ILE CG2 HG23 sing N N 313 ILE CD1 HD11 sing N N 314 ILE CD1 HD12 sing N N 315 ILE CD1 HD13 sing N N 316 ILE OXT HXT sing N N 317 LEU N CA sing N N 318 LEU N H sing N N 319 LEU N H2 sing N N 320 LEU CA C sing N N 321 LEU CA CB sing N N 322 LEU CA HA sing N N 323 LEU C O doub N N 324 LEU C OXT sing N N 325 LEU CB CG sing N N 326 LEU CB HB2 sing N N 327 LEU CB HB3 sing N N 328 LEU CG CD1 sing N N 329 LEU CG CD2 sing N N 330 LEU CG HG sing N N 331 LEU CD1 HD11 sing N N 332 LEU CD1 HD12 sing N N 333 LEU CD1 HD13 sing N N 334 LEU CD2 HD21 sing N N 335 LEU CD2 HD22 sing N N 336 LEU CD2 HD23 sing N N 337 LEU OXT HXT sing N N 338 LYS N CA sing N N 339 LYS N H sing N N 340 LYS N H2 sing N N 341 LYS CA C sing N N 342 LYS CA CB sing N N 343 LYS CA HA sing N N 344 LYS C O doub N N 345 LYS C OXT sing N N 346 LYS CB CG sing N N 347 LYS CB HB2 sing N N 348 LYS CB HB3 sing N N 349 LYS CG CD sing N N 350 LYS CG HG2 sing N N 351 LYS CG HG3 sing N N 352 LYS CD CE sing N N 353 LYS CD HD2 sing N N 354 LYS CD HD3 sing N N 355 LYS CE NZ sing N N 356 LYS CE HE2 sing N N 357 LYS CE HE3 sing N N 358 LYS NZ HZ1 sing N N 359 LYS NZ HZ2 sing N N 360 LYS NZ HZ3 sing N N 361 LYS OXT HXT sing N N 362 PHE N CA sing N N 363 PHE N H sing N N 364 PHE N H2 sing N N 365 PHE CA C sing N N 366 PHE CA CB sing N N 367 PHE CA HA sing N N 368 PHE C O doub N N 369 PHE C OXT sing N N 370 PHE CB CG sing N N 371 PHE CB HB2 sing N N 372 PHE CB HB3 sing N N 373 PHE CG CD1 doub Y N 374 PHE CG CD2 sing Y N 375 PHE CD1 CE1 sing Y N 376 PHE CD1 HD1 sing N N 377 PHE CD2 CE2 doub Y N 378 PHE CD2 HD2 sing N N 379 PHE CE1 CZ doub Y N 380 PHE CE1 HE1 sing N N 381 PHE CE2 CZ sing Y N 382 PHE CE2 HE2 sing N N 383 PHE CZ HZ sing N N 384 PHE OXT HXT sing N N 385 PRO N CA sing N N 386 PRO N CD sing N N 387 PRO N H sing N N 388 PRO CA C sing N N 389 PRO CA CB sing N N 390 PRO CA HA sing N N 391 PRO C O doub N N 392 PRO C OXT sing N N 393 PRO CB CG sing N N 394 PRO CB HB2 sing N N 395 PRO CB HB3 sing N N 396 PRO CG CD sing N N 397 PRO CG HG2 sing N N 398 PRO CG HG3 sing N N 399 PRO CD HD2 sing N N 400 PRO CD HD3 sing N N 401 PRO OXT HXT sing N N 402 SER N CA sing N N 403 SER N H sing N N 404 SER N H2 sing N N 405 SER CA C sing N N 406 SER CA CB sing N N 407 SER CA HA sing N N 408 SER C O doub N N 409 SER C OXT sing N N 410 SER CB OG sing N N 411 SER CB HB2 sing N N 412 SER CB HB3 sing N N 413 SER OG HG sing N N 414 SER OXT HXT sing N N 415 THR N CA sing N N 416 THR N H sing N N 417 THR N H2 sing N N 418 THR CA C sing N N 419 THR CA CB sing N N 420 THR CA HA sing N N 421 THR C O doub N N 422 THR C OXT sing N N 423 THR CB OG1 sing N N 424 THR CB CG2 sing N N 425 THR CB HB sing N N 426 THR OG1 HG1 sing N N 427 THR CG2 HG21 sing N N 428 THR CG2 HG22 sing N N 429 THR CG2 HG23 sing N N 430 THR OXT HXT sing N N 431 TRP N CA sing N N 432 TRP N H sing N N 433 TRP N H2 sing N N 434 TRP CA C sing N N 435 TRP CA CB sing N N 436 TRP CA HA sing N N 437 TRP C O doub N N 438 TRP C OXT sing N N 439 TRP CB CG sing N N 440 TRP CB HB2 sing N N 441 TRP CB HB3 sing N N 442 TRP CG CD1 doub Y N 443 TRP CG CD2 sing Y N 444 TRP CD1 NE1 sing Y N 445 TRP CD1 HD1 sing N N 446 TRP CD2 CE2 doub Y N 447 TRP CD2 CE3 sing Y N 448 TRP NE1 CE2 sing Y N 449 TRP NE1 HE1 sing N N 450 TRP CE2 CZ2 sing Y N 451 TRP CE3 CZ3 doub Y N 452 TRP CE3 HE3 sing N N 453 TRP CZ2 CH2 doub Y N 454 TRP CZ2 HZ2 sing N N 455 TRP CZ3 CH2 sing Y N 456 TRP CZ3 HZ3 sing N N 457 TRP CH2 HH2 sing N N 458 TRP OXT HXT sing N N 459 TYR N CA sing N N 460 TYR N H sing N N 461 TYR N H2 sing N N 462 TYR CA C sing N N 463 TYR CA CB sing N N 464 TYR CA HA sing N N 465 TYR C O doub N N 466 TYR C OXT sing N N 467 TYR CB CG sing N N 468 TYR CB HB2 sing N N 469 TYR CB HB3 sing N N 470 TYR CG CD1 doub Y N 471 TYR CG CD2 sing Y N 472 TYR CD1 CE1 sing Y N 473 TYR CD1 HD1 sing N N 474 TYR CD2 CE2 doub Y N 475 TYR CD2 HD2 sing N N 476 TYR CE1 CZ doub Y N 477 TYR CE1 HE1 sing N N 478 TYR CE2 CZ sing Y N 479 TYR CE2 HE2 sing N N 480 TYR CZ OH sing N N 481 TYR OH HH sing N N 482 TYR OXT HXT sing N N 483 VAL N CA sing N N 484 VAL N H sing N N 485 VAL N H2 sing N N 486 VAL CA C sing N N 487 VAL CA CB sing N N 488 VAL CA HA sing N N 489 VAL C O doub N N 490 VAL C OXT sing N N 491 VAL CB CG1 sing N N 492 VAL CB CG2 sing N N 493 VAL CB HB sing N N 494 VAL CG1 HG11 sing N N 495 VAL CG1 HG12 sing N N 496 VAL CG1 HG13 sing N N 497 VAL CG2 HG21 sing N N 498 VAL CG2 HG22 sing N N 499 VAL CG2 HG23 sing N N 500 VAL OXT HXT sing N N 501 # _ndb_struct_conf_na.entry_id 3CMY _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 2 1_555 C DG 14 1_555 -0.087 -0.060 0.061 10.036 -13.827 -4.331 1 B_DC2:DG14_C B 2 ? C 14 ? 19 1 1 B DA 3 1_555 C DT 13 1_555 0.207 -0.314 0.022 -2.542 -9.838 4.075 2 B_DA3:DT13_C B 3 ? C 13 ? 20 1 1 B DT 4 1_555 C DA 12 1_555 -0.045 -0.026 -0.105 10.265 -6.985 2.645 3 B_DT4:DA12_C B 4 ? C 12 ? 20 1 1 B DA 5 1_555 C DT 11 1_555 -0.061 -0.075 -0.257 -1.884 -14.120 1.809 4 B_DA5:DT11_C B 5 ? C 11 ? 20 1 1 B DA 6 1_555 C DT 10 1_555 0.080 -0.022 0.069 -1.030 -16.018 1.519 5 B_DA6:DT10_C B 6 ? C 10 ? 20 1 1 B DT 7 1_555 C DA 9 1_555 -0.060 -0.069 0.073 -4.874 -15.696 -1.278 6 B_DT7:DA9_C B 7 ? C 9 ? 20 1 1 B DC 8 1_555 C DG 8 1_555 0.402 -0.075 0.060 -5.926 -0.756 0.233 7 B_DC8:DG8_C B 8 ? C 8 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 2 1_555 C DG 14 1_555 B DA 3 1_555 C DT 13 1_555 0.703 2.264 3.794 1.841 -6.379 48.769 3.256 -0.689 3.513 -7.683 -2.218 49.191 1 BB_DC2DA3:DT13DG14_CC B 2 ? C 14 ? B 3 ? C 13 ? 1 B DA 3 1_555 C DT 13 1_555 B DT 4 1_555 C DA 12 1_555 1.070 0.073 2.957 1.539 2.415 29.140 -0.333 -1.813 3.004 4.786 -3.049 29.277 2 BB_DA3DT4:DA12DT13_CC B 3 ? C 13 ? B 4 ? C 12 ? 1 B DT 4 1_555 C DA 12 1_555 B DA 5 1_555 C DT 11 1_555 -1.111 0.532 3.571 -3.907 4.665 40.252 0.188 1.115 3.695 6.731 5.638 40.691 3 BB_DT4DA5:DT11DA12_CC B 4 ? C 12 ? B 5 ? C 11 ? 1 B DA 5 1_555 C DT 11 1_555 B DA 6 1_555 C DT 10 1_555 -0.214 -0.350 3.160 -3.865 1.518 37.686 -0.726 -0.149 3.150 2.341 5.961 37.906 4 BB_DA5DA6:DT10DT11_CC B 5 ? C 11 ? B 6 ? C 10 ? 1 B DA 6 1_555 C DT 10 1_555 B DT 7 1_555 C DA 9 1_555 -0.702 -0.637 3.318 -0.885 -2.354 32.643 -0.715 1.090 3.372 -4.180 1.571 32.737 5 BB_DA6DT7:DA9DT10_CC B 6 ? C 10 ? B 7 ? C 9 ? 1 B DT 7 1_555 C DA 9 1_555 B DC 8 1_555 C DG 8 1_555 0.904 0.896 3.454 3.180 3.540 38.473 0.883 -0.942 3.580 5.347 -4.804 38.755 6 BB_DT7DC8:DG8DA9_CC B 7 ? C 9 ? B 8 ? C 8 ? # _pdbx_initial_refinement_model.accession_code 1FJL _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 3CMY _atom_sites.fract_transf_matrix[1][1] 0.023081 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016066 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010804 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_