data_3CNI # _entry.id 3CNI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.357 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3CNI pdb_00003cni 10.2210/pdb3cni/pdb RCSB RCSB046988 ? ? WWPDB D_1000046988 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC7623 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3CNI _pdbx_database_status.recvd_initial_deposition_date 2008-03-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Filippova, E.V.' 1 ? 'Shumilin, I.' 2 ? 'Tkaczuk, K.L.' 3 ? 'Cymborowski, M.' 4 ? 'Chruszcz, M.' 5 ? 'Xu, X.' 6 ? 'Que, Q.' 7 ? 'Savchenko, A.' 8 ? 'Edwards, A.M.' 9 ? 'Joachimiak, A.' 10 ? 'Minor, W.' 11 0000-0001-7075-7090 'Midwest Center for Structural Genomics (MCSG)' 12 ? # _citation.id primary _citation.title 'Structural characterization of the putative ABC-type 2 transporter from Thermotoga maritima MSB8.' _citation.journal_abbrev J.Struct.Funct.Genom. _citation.journal_volume 15 _citation.page_first 215 _citation.page_last 222 _citation.year 2014 _citation.journal_id_ASTM ? _citation.country NE _citation.journal_id_ISSN 1345-711X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25306867 _citation.pdbx_database_id_DOI 10.1007/s10969-014-9189-7 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Filippova, E.V.' 1 ? primary 'Tkaczuk, K.L.' 2 ? primary 'Chruszcz, M.' 3 ? primary 'Xu, X.' 4 ? primary 'Savchenko, A.' 5 ? primary 'Edwards, A.' 6 ? primary 'Minor, W.' 7 0000-0001-7075-7090 # _cell.entry_id 3CNI _cell.length_a 65.598 _cell.length_b 65.598 _cell.length_c 141.192 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3CNI _symmetry.space_group_name_H-M 'P 64 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative ABC type-2 transporter' 17137.287 1 ? ? 'Domain: Residues 37-192' ? 2 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 3 water nat water 18.015 31 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;KSTVEKSTVGQKVAIVREDTGTIAELAEKALGN(MSE)VDIVYAGSDLKEAEEAVKKEKAPAIIVIPKGFSQSLESGEKA RLEIVWYLRGTGLSEAVSTGTISSLIESLKVQLASFLLNDPKKAQLLFDPLEIVQHTYLRGSLFKNHSPEAI(MSE)NVF YSQN ; _entity_poly.pdbx_seq_one_letter_code_can ;KSTVEKSTVGQKVAIVREDTGTIAELAEKALGNMVDIVYAGSDLKEAEEAVKKEKAPAIIVIPKGFSQSLESGEKARLEI VWYLRGTGLSEAVSTGTISSLIESLKVQLASFLLNDPKKAQLLFDPLEIVQHTYLRGSLFKNHSPEAIMNVFYSQN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC7623 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 SER n 1 3 THR n 1 4 VAL n 1 5 GLU n 1 6 LYS n 1 7 SER n 1 8 THR n 1 9 VAL n 1 10 GLY n 1 11 GLN n 1 12 LYS n 1 13 VAL n 1 14 ALA n 1 15 ILE n 1 16 VAL n 1 17 ARG n 1 18 GLU n 1 19 ASP n 1 20 THR n 1 21 GLY n 1 22 THR n 1 23 ILE n 1 24 ALA n 1 25 GLU n 1 26 LEU n 1 27 ALA n 1 28 GLU n 1 29 LYS n 1 30 ALA n 1 31 LEU n 1 32 GLY n 1 33 ASN n 1 34 MSE n 1 35 VAL n 1 36 ASP n 1 37 ILE n 1 38 VAL n 1 39 TYR n 1 40 ALA n 1 41 GLY n 1 42 SER n 1 43 ASP n 1 44 LEU n 1 45 LYS n 1 46 GLU n 1 47 ALA n 1 48 GLU n 1 49 GLU n 1 50 ALA n 1 51 VAL n 1 52 LYS n 1 53 LYS n 1 54 GLU n 1 55 LYS n 1 56 ALA n 1 57 PRO n 1 58 ALA n 1 59 ILE n 1 60 ILE n 1 61 VAL n 1 62 ILE n 1 63 PRO n 1 64 LYS n 1 65 GLY n 1 66 PHE n 1 67 SER n 1 68 GLN n 1 69 SER n 1 70 LEU n 1 71 GLU n 1 72 SER n 1 73 GLY n 1 74 GLU n 1 75 LYS n 1 76 ALA n 1 77 ARG n 1 78 LEU n 1 79 GLU n 1 80 ILE n 1 81 VAL n 1 82 TRP n 1 83 TYR n 1 84 LEU n 1 85 ARG n 1 86 GLY n 1 87 THR n 1 88 GLY n 1 89 LEU n 1 90 SER n 1 91 GLU n 1 92 ALA n 1 93 VAL n 1 94 SER n 1 95 THR n 1 96 GLY n 1 97 THR n 1 98 ILE n 1 99 SER n 1 100 SER n 1 101 LEU n 1 102 ILE n 1 103 GLU n 1 104 SER n 1 105 LEU n 1 106 LYS n 1 107 VAL n 1 108 GLN n 1 109 LEU n 1 110 ALA n 1 111 SER n 1 112 PHE n 1 113 LEU n 1 114 LEU n 1 115 ASN n 1 116 ASP n 1 117 PRO n 1 118 LYS n 1 119 LYS n 1 120 ALA n 1 121 GLN n 1 122 LEU n 1 123 LEU n 1 124 PHE n 1 125 ASP n 1 126 PRO n 1 127 LEU n 1 128 GLU n 1 129 ILE n 1 130 VAL n 1 131 GLN n 1 132 HIS n 1 133 THR n 1 134 TYR n 1 135 LEU n 1 136 ARG n 1 137 GLY n 1 138 SER n 1 139 LEU n 1 140 PHE n 1 141 LYS n 1 142 ASN n 1 143 HIS n 1 144 SER n 1 145 PRO n 1 146 GLU n 1 147 ALA n 1 148 ILE n 1 149 MSE n 1 150 ASN n 1 151 VAL n 1 152 PHE n 1 153 TYR n 1 154 SER n 1 155 GLN n 1 156 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermotoga _entity_src_gen.pdbx_gene_src_gene TM_0543 _entity_src_gen.gene_src_species 'Thermotoga maritima' _entity_src_gen.gene_src_strain 'MSB8 / DSM 3109 / JCM 10099' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima MSB8' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 243274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 43589 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-CODONPLUS(DE3)-RIPL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'p15TV LIC' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9WZ13_THEMA _struct_ref.pdbx_db_accession Q9WZ13 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KSTVEKSTVGQKVAIVREDTGTIAELAEKALGNMVDIVYAGSDLKEAEEAVKKEKAPAIIVIPKGFSQSLESGEKARLEI VWYLRGTGLSEAVSTGTISSLIESLKVQLASFLLNDPKKAQLLFDPLEIVQHTYLRGSLFKNHSPEAIMNVFYSQN ; _struct_ref.pdbx_align_begin 37 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3CNI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 156 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9WZ13 _struct_ref_seq.db_align_beg 37 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 192 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 37 _struct_ref_seq.pdbx_auth_seq_align_end 192 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3CNI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.56 _exptl_crystal.density_percent_sol 51.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 273 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.1M Na Hepes, 0.2M CaCl2, 28% PEG 400, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 273K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type APS-1 _diffrn_detector.pdbx_collection_date 2008-02-24 _diffrn_detector.details Mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111) CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97934 # _reflns.entry_id 3CNI _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 56.8 _reflns.d_resolution_high 2.30 _reflns.number_obs 8587 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.050 _reflns.pdbx_Rsym_value 0.050 _reflns.pdbx_netI_over_sigmaI 65.6960 _reflns.B_iso_Wilson_estimate 64.88 _reflns.pdbx_redundancy 13.400 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.34 _reflns_shell.percent_possible_all 99.2 _reflns_shell.Rmerge_I_obs 0.713 _reflns_shell.pdbx_Rsym_value 0.713 _reflns_shell.meanI_over_sigI_obs 3.400 _reflns_shell.pdbx_redundancy 10.60 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3CNI _refine.ls_number_reflns_obs 8537 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 56.8 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 99.440 _refine.ls_R_factor_obs 0.205 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.204 _refine.ls_R_factor_R_free 0.227 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 403 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.959 _refine.B_iso_mean 51.47 _refine.aniso_B[1][1] -1.22000 _refine.aniso_B[2][2] -1.22000 _refine.aniso_B[3][3] 1.84000 _refine.aniso_B[1][2] -0.61000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.271 _refine.pdbx_overall_ESU_R_Free 0.199 _refine.overall_SU_ML 0.181 _refine.overall_SU_B 15.170 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1092 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 31 _refine_hist.number_atoms_total 1125 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 56.8 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.022 0.022 ? 1125 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 741 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.802 1.981 ? 1528 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.517 3.000 ? 1837 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.990 5.000 ? 148 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.287 25.952 ? 42 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.375 15.000 ? 199 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.184 15.000 ? 2 'X-RAY DIFFRACTION' ? r_chiral_restr 0.092 0.200 ? 184 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 1241 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.003 0.020 ? 204 'X-RAY DIFFRACTION' ? r_mcbond_it 0.910 1.500 ? 726 'X-RAY DIFFRACTION' ? r_mcbond_other 0.211 1.500 ? 295 'X-RAY DIFFRACTION' ? r_mcangle_it 1.655 2.000 ? 1171 'X-RAY DIFFRACTION' ? r_scbond_it 2.579 3.000 ? 399 'X-RAY DIFFRACTION' ? r_scangle_it 4.221 4.500 ? 355 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.36 _refine_ls_shell.number_reflns_R_work 591 _refine_ls_shell.R_factor_R_work 0.283 _refine_ls_shell.percent_reflns_obs 99.20 _refine_ls_shell.R_factor_R_free 0.408 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 26 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3CNI _struct.title 'Crystal structure of a domain of a putative ABC type-2 transporter from Thermotoga maritima MSB8' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3CNI _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text ;STRUCTURAL GENOMICS, ABC TYPE-2 TRANSPORTER, THERMOTOGA MARITIMA, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, TRANSPORT PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 21 ? ASN A 33 ? GLY A 57 ASN A 69 1 ? 13 HELX_P HELX_P2 2 ASP A 43 ? LYS A 55 ? ASP A 79 LYS A 91 1 ? 13 HELX_P HELX_P3 3 GLY A 65 ? SER A 72 ? GLY A 101 SER A 108 1 ? 8 HELX_P HELX_P4 4 GLY A 88 ? GLN A 108 ? GLY A 124 GLN A 144 1 ? 21 HELX_P HELX_P5 5 LEU A 109 ? LEU A 114 ? LEU A 145 LEU A 150 5 ? 6 HELX_P HELX_P6 6 ALA A 120 ? PHE A 124 ? ALA A 156 PHE A 160 5 ? 5 HELX_P HELX_P7 7 SER A 144 ? TYR A 153 ? SER A 180 TYR A 189 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASN 33 C ? ? ? 1_555 A MSE 34 N ? ? A ASN 69 A MSE 70 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 34 C ? ? ? 1_555 A VAL 35 N ? ? A MSE 70 A VAL 71 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale3 covale both ? A ILE 148 C ? ? ? 1_555 A MSE 149 N ? ? A ILE 184 A MSE 185 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale4 covale both ? A MSE 149 C ? ? ? 1_555 A ASN 150 N ? ? A MSE 185 A ASN 186 1_555 ? ? ? ? ? ? ? 1.324 ? ? metalc1 metalc ? ? A GLU 25 OE2 ? ? ? 1_555 C CA . CA ? ? A GLU 61 A CA 202 1_555 ? ? ? ? ? ? ? 2.590 ? ? metalc2 metalc ? ? A GLU 25 OE1 ? ? ? 1_555 C CA . CA ? ? A GLU 61 A CA 202 1_555 ? ? ? ? ? ? ? 3.132 ? ? metalc3 metalc ? ? A SER 99 OG ? ? ? 1_555 B CA . CA ? ? A SER 135 A CA 201 1_555 ? ? ? ? ? ? ? 2.557 ? ? metalc4 metalc ? ? A GLU 146 OE2 ? ? ? 1_555 B CA . CA ? ? A GLU 182 A CA 201 1_555 ? ? ? ? ? ? ? 2.482 ? ? metalc5 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 201 A HOH 319 1_555 ? ? ? ? ? ? ? 2.512 ? ? metalc6 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 201 A HOH 320 1_555 ? ? ? ? ? ? ? 2.358 ? ? metalc7 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 201 A HOH 321 1_555 ? ? ? ? ? ? ? 2.330 ? ? metalc8 metalc ? ? B CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 201 A HOH 322 1_555 ? ? ? ? ? ? ? 2.379 ? ? metalc9 metalc ? ? C CA . CA ? ? ? 1_555 D HOH . O ? ? A CA 202 A HOH 325 1_555 ? ? ? ? ? ? ? 2.460 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 36 ? GLY A 41 ? ASP A 72 GLY A 77 A 2 LYS A 12 ? ARG A 17 ? LYS A 48 ARG A 53 A 3 ALA A 58 ? ILE A 62 ? ALA A 94 ILE A 98 A 4 ALA A 76 ? LEU A 84 ? ALA A 112 LEU A 120 A 5 LEU A 127 ? LEU A 135 ? LEU A 163 LEU A 171 A 6 SER A 138 ? PHE A 140 ? SER A 174 PHE A 176 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 41 ? O GLY A 77 N ARG A 17 ? N ARG A 53 A 2 3 N VAL A 16 ? N VAL A 52 O ILE A 62 ? O ILE A 98 A 3 4 N VAL A 61 ? N VAL A 97 O GLU A 79 ? O GLU A 115 A 4 5 N ALA A 76 ? N ALA A 112 O GLU A 128 ? O GLU A 164 A 5 6 N LEU A 135 ? N LEU A 171 O SER A 138 ? O SER A 174 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 201 ? 6 'BINDING SITE FOR RESIDUE CA A 201' AC2 Software A CA 202 ? 2 'BINDING SITE FOR RESIDUE CA A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 SER A 99 ? SER A 135 . ? 1_555 ? 2 AC1 6 GLU A 146 ? GLU A 182 . ? 1_555 ? 3 AC1 6 HOH D . ? HOH A 319 . ? 1_555 ? 4 AC1 6 HOH D . ? HOH A 320 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH A 321 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 322 . ? 1_555 ? 7 AC2 2 GLU A 25 ? GLU A 61 . ? 1_555 ? 8 AC2 2 HOH D . ? HOH A 325 . ? 1_555 ? # _database_PDB_matrix.entry_id 3CNI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3CNI _atom_sites.fract_transf_matrix[1][1] 0.015244 _atom_sites.fract_transf_matrix[1][2] 0.008801 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017603 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007083 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 37 ? ? ? A . n A 1 2 SER 2 38 ? ? ? A . n A 1 3 THR 3 39 ? ? ? A . n A 1 4 VAL 4 40 ? ? ? A . n A 1 5 GLU 5 41 ? ? ? A . n A 1 6 LYS 6 42 ? ? ? A . n A 1 7 SER 7 43 ? ? ? A . n A 1 8 THR 8 44 ? ? ? A . n A 1 9 VAL 9 45 ? ? ? A . n A 1 10 GLY 10 46 ? ? ? A . n A 1 11 GLN 11 47 47 GLN GLN A . n A 1 12 LYS 12 48 48 LYS LYS A . n A 1 13 VAL 13 49 49 VAL VAL A . n A 1 14 ALA 14 50 50 ALA ALA A . n A 1 15 ILE 15 51 51 ILE ILE A . n A 1 16 VAL 16 52 52 VAL VAL A . n A 1 17 ARG 17 53 53 ARG ARG A . n A 1 18 GLU 18 54 54 GLU GLU A . n A 1 19 ASP 19 55 55 ASP ASP A . n A 1 20 THR 20 56 56 THR THR A . n A 1 21 GLY 21 57 57 GLY GLY A . n A 1 22 THR 22 58 58 THR THR A . n A 1 23 ILE 23 59 59 ILE ILE A . n A 1 24 ALA 24 60 60 ALA ALA A . n A 1 25 GLU 25 61 61 GLU GLU A . n A 1 26 LEU 26 62 62 LEU LEU A . n A 1 27 ALA 27 63 63 ALA ALA A . n A 1 28 GLU 28 64 64 GLU GLU A . n A 1 29 LYS 29 65 65 LYS LYS A . n A 1 30 ALA 30 66 66 ALA ALA A . n A 1 31 LEU 31 67 67 LEU LEU A . n A 1 32 GLY 32 68 68 GLY GLY A . n A 1 33 ASN 33 69 69 ASN ASN A . n A 1 34 MSE 34 70 70 MSE MSE A . n A 1 35 VAL 35 71 71 VAL VAL A . n A 1 36 ASP 36 72 72 ASP ASP A . n A 1 37 ILE 37 73 73 ILE ILE A . n A 1 38 VAL 38 74 74 VAL VAL A . n A 1 39 TYR 39 75 75 TYR TYR A . n A 1 40 ALA 40 76 76 ALA ALA A . n A 1 41 GLY 41 77 77 GLY GLY A . n A 1 42 SER 42 78 78 SER SER A . n A 1 43 ASP 43 79 79 ASP ASP A . n A 1 44 LEU 44 80 80 LEU LEU A . n A 1 45 LYS 45 81 81 LYS LYS A . n A 1 46 GLU 46 82 82 GLU GLU A . n A 1 47 ALA 47 83 83 ALA ALA A . n A 1 48 GLU 48 84 84 GLU GLU A . n A 1 49 GLU 49 85 85 GLU GLU A . n A 1 50 ALA 50 86 86 ALA ALA A . n A 1 51 VAL 51 87 87 VAL VAL A . n A 1 52 LYS 52 88 88 LYS LYS A . n A 1 53 LYS 53 89 89 LYS LYS A . n A 1 54 GLU 54 90 90 GLU GLU A . n A 1 55 LYS 55 91 91 LYS LYS A . n A 1 56 ALA 56 92 92 ALA ALA A . n A 1 57 PRO 57 93 93 PRO PRO A . n A 1 58 ALA 58 94 94 ALA ALA A . n A 1 59 ILE 59 95 95 ILE ILE A . n A 1 60 ILE 60 96 96 ILE ILE A . n A 1 61 VAL 61 97 97 VAL VAL A . n A 1 62 ILE 62 98 98 ILE ILE A . n A 1 63 PRO 63 99 99 PRO PRO A . n A 1 64 LYS 64 100 100 LYS LYS A . n A 1 65 GLY 65 101 101 GLY GLY A . n A 1 66 PHE 66 102 102 PHE PHE A . n A 1 67 SER 67 103 103 SER SER A . n A 1 68 GLN 68 104 104 GLN GLN A . n A 1 69 SER 69 105 105 SER SER A . n A 1 70 LEU 70 106 106 LEU LEU A . n A 1 71 GLU 71 107 107 GLU GLU A . n A 1 72 SER 72 108 108 SER SER A . n A 1 73 GLY 73 109 109 GLY GLY A . n A 1 74 GLU 74 110 110 GLU GLU A . n A 1 75 LYS 75 111 111 LYS LYS A . n A 1 76 ALA 76 112 112 ALA ALA A . n A 1 77 ARG 77 113 113 ARG ARG A . n A 1 78 LEU 78 114 114 LEU LEU A . n A 1 79 GLU 79 115 115 GLU GLU A . n A 1 80 ILE 80 116 116 ILE ILE A . n A 1 81 VAL 81 117 117 VAL VAL A . n A 1 82 TRP 82 118 118 TRP TRP A . n A 1 83 TYR 83 119 119 TYR TYR A . n A 1 84 LEU 84 120 120 LEU LEU A . n A 1 85 ARG 85 121 121 ARG ARG A . n A 1 86 GLY 86 122 122 GLY GLY A . n A 1 87 THR 87 123 123 THR THR A . n A 1 88 GLY 88 124 124 GLY GLY A . n A 1 89 LEU 89 125 125 LEU LEU A . n A 1 90 SER 90 126 126 SER SER A . n A 1 91 GLU 91 127 127 GLU GLU A . n A 1 92 ALA 92 128 128 ALA ALA A . n A 1 93 VAL 93 129 129 VAL VAL A . n A 1 94 SER 94 130 130 SER SER A . n A 1 95 THR 95 131 131 THR THR A . n A 1 96 GLY 96 132 132 GLY GLY A . n A 1 97 THR 97 133 133 THR THR A . n A 1 98 ILE 98 134 134 ILE ILE A . n A 1 99 SER 99 135 135 SER SER A . n A 1 100 SER 100 136 136 SER SER A . n A 1 101 LEU 101 137 137 LEU LEU A . n A 1 102 ILE 102 138 138 ILE ILE A . n A 1 103 GLU 103 139 139 GLU GLU A . n A 1 104 SER 104 140 140 SER SER A . n A 1 105 LEU 105 141 141 LEU LEU A . n A 1 106 LYS 106 142 142 LYS LYS A . n A 1 107 VAL 107 143 143 VAL VAL A . n A 1 108 GLN 108 144 144 GLN GLN A . n A 1 109 LEU 109 145 145 LEU LEU A . n A 1 110 ALA 110 146 146 ALA ALA A . n A 1 111 SER 111 147 147 SER SER A . n A 1 112 PHE 112 148 148 PHE PHE A . n A 1 113 LEU 113 149 149 LEU LEU A . n A 1 114 LEU 114 150 150 LEU LEU A . n A 1 115 ASN 115 151 151 ASN ASN A . n A 1 116 ASP 116 152 152 ASP ASP A . n A 1 117 PRO 117 153 153 PRO PRO A . n A 1 118 LYS 118 154 154 LYS LYS A . n A 1 119 LYS 119 155 155 LYS LYS A . n A 1 120 ALA 120 156 156 ALA ALA A . n A 1 121 GLN 121 157 157 GLN GLN A . n A 1 122 LEU 122 158 158 LEU LEU A . n A 1 123 LEU 123 159 159 LEU LEU A . n A 1 124 PHE 124 160 160 PHE PHE A . n A 1 125 ASP 125 161 161 ASP ASP A . n A 1 126 PRO 126 162 162 PRO PRO A . n A 1 127 LEU 127 163 163 LEU LEU A . n A 1 128 GLU 128 164 164 GLU GLU A . n A 1 129 ILE 129 165 165 ILE ILE A . n A 1 130 VAL 130 166 166 VAL VAL A . n A 1 131 GLN 131 167 167 GLN GLN A . n A 1 132 HIS 132 168 168 HIS HIS A . n A 1 133 THR 133 169 169 THR THR A . n A 1 134 TYR 134 170 170 TYR TYR A . n A 1 135 LEU 135 171 171 LEU LEU A . n A 1 136 ARG 136 172 172 ARG ARG A . n A 1 137 GLY 137 173 173 GLY GLY A . n A 1 138 SER 138 174 174 SER SER A . n A 1 139 LEU 139 175 175 LEU LEU A . n A 1 140 PHE 140 176 176 PHE PHE A . n A 1 141 LYS 141 177 177 LYS LYS A . n A 1 142 ASN 142 178 178 ASN ASN A . n A 1 143 HIS 143 179 179 HIS HIS A . n A 1 144 SER 144 180 180 SER SER A . n A 1 145 PRO 145 181 181 PRO PRO A . n A 1 146 GLU 146 182 182 GLU GLU A . n A 1 147 ALA 147 183 183 ALA ALA A . n A 1 148 ILE 148 184 184 ILE ILE A . n A 1 149 MSE 149 185 185 MSE MSE A . n A 1 150 ASN 150 186 186 ASN ASN A . n A 1 151 VAL 151 187 187 VAL VAL A . n A 1 152 PHE 152 188 188 PHE PHE A . n A 1 153 TYR 153 189 189 TYR TYR A . n A 1 154 SER 154 190 190 SER SER A . n A 1 155 GLN 155 191 191 GLN GLN A . n A 1 156 ASN 156 192 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 201 201 CA CA A . C 2 CA 1 202 202 CA CA A . D 3 HOH 1 301 301 HOH HOH A . D 3 HOH 2 302 302 HOH HOH A . D 3 HOH 3 303 303 HOH HOH A . D 3 HOH 4 304 304 HOH HOH A . D 3 HOH 5 305 305 HOH HOH A . D 3 HOH 6 306 306 HOH HOH A . D 3 HOH 7 307 307 HOH HOH A . D 3 HOH 8 308 308 HOH HOH A . D 3 HOH 9 309 309 HOH HOH A . D 3 HOH 10 310 310 HOH HOH A . D 3 HOH 11 311 311 HOH HOH A . D 3 HOH 12 315 315 HOH HOH A . D 3 HOH 13 316 316 HOH HOH A . D 3 HOH 14 317 317 HOH HOH A . D 3 HOH 15 318 318 HOH HOH A . D 3 HOH 16 319 319 HOH HOH A . D 3 HOH 17 320 320 HOH HOH A . D 3 HOH 18 321 321 HOH HOH A . D 3 HOH 19 322 322 HOH HOH A . D 3 HOH 20 323 323 HOH HOH A . D 3 HOH 21 324 324 HOH HOH A . D 3 HOH 22 325 325 HOH HOH A . D 3 HOH 23 327 327 HOH HOH A . D 3 HOH 24 328 328 HOH HOH A . D 3 HOH 25 329 329 HOH HOH A . D 3 HOH 26 330 330 HOH HOH A . D 3 HOH 27 332 332 HOH HOH A . D 3 HOH 28 333 333 HOH HOH A . D 3 HOH 29 334 334 HOH HOH A . D 3 HOH 30 335 335 HOH HOH A . D 3 HOH 31 336 336 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 34 A MSE 70 ? MET SELENOMETHIONINE 2 A MSE 149 A MSE 185 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2260 ? 1 MORE -23.2 ? 1 'SSA (A^2)' 12900 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 65.5980000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id CA _pdbx_struct_special_symmetry.auth_seq_id 202 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id CA _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE2 ? A GLU 25 ? A GLU 61 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 OE1 ? A GLU 25 ? A GLU 61 ? 1_555 44.0 ? 2 OE2 ? A GLU 25 ? A GLU 61 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? D HOH . ? A HOH 325 ? 1_555 71.0 ? 3 OE1 ? A GLU 25 ? A GLU 61 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? D HOH . ? A HOH 325 ? 1_555 85.6 ? 4 OG ? A SER 99 ? A SER 135 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE2 ? A GLU 146 ? A GLU 182 ? 1_555 135.5 ? 5 OG ? A SER 99 ? A SER 135 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 319 ? 1_555 95.2 ? 6 OE2 ? A GLU 146 ? A GLU 182 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 319 ? 1_555 76.9 ? 7 OG ? A SER 99 ? A SER 135 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 320 ? 1_555 71.1 ? 8 OE2 ? A GLU 146 ? A GLU 182 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 320 ? 1_555 152.9 ? 9 O ? D HOH . ? A HOH 319 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 320 ? 1_555 98.5 ? 10 OG ? A SER 99 ? A SER 135 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 321 ? 1_555 68.8 ? 11 OE2 ? A GLU 146 ? A GLU 182 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 321 ? 1_555 78.5 ? 12 O ? D HOH . ? A HOH 319 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 321 ? 1_555 121.8 ? 13 O ? D HOH . ? A HOH 320 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 321 ? 1_555 124.4 ? 14 OG ? A SER 99 ? A SER 135 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 322 ? 1_555 110.6 ? 15 OE2 ? A GLU 146 ? A GLU 182 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 322 ? 1_555 87.0 ? 16 O ? D HOH . ? A HOH 319 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 322 ? 1_555 153.9 ? 17 O ? D HOH . ? A HOH 320 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 322 ? 1_555 86.5 ? 18 O ? D HOH . ? A HOH 321 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? D HOH . ? A HOH 322 ? 1_555 73.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-10-05 4 'Structure model' 1 3 2014-10-29 5 'Structure model' 1 4 2015-02-04 6 'Structure model' 1 5 2022-04-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Structure summary' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Database references' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Derived calculations' 8 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' audit_author 2 6 'Structure model' citation_author 3 6 'Structure model' database_2 4 6 'Structure model' pdbx_struct_conn_angle 5 6 'Structure model' struct_conn 6 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_audit_author.identifier_ORCID' 2 6 'Structure model' '_citation_author.identifier_ORCID' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' 5 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 6 'Structure model' '_pdbx_struct_conn_angle.value' 18 6 'Structure model' '_struct_conn.pdbx_dist_value' 19 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 31 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 32 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 33 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 22.0890 _pdbx_refine_tls.origin_y 5.2863 _pdbx_refine_tls.origin_z 15.0134 _pdbx_refine_tls.T[1][1] -0.1050 _pdbx_refine_tls.T[2][2] -0.2293 _pdbx_refine_tls.T[3][3] -0.1311 _pdbx_refine_tls.T[1][2] -0.0211 _pdbx_refine_tls.T[1][3] 0.0208 _pdbx_refine_tls.T[2][3] 0.0126 _pdbx_refine_tls.L[1][1] 4.6499 _pdbx_refine_tls.L[2][2] 3.8027 _pdbx_refine_tls.L[3][3] 3.4212 _pdbx_refine_tls.L[1][2] 0.8844 _pdbx_refine_tls.L[1][3] -1.7092 _pdbx_refine_tls.L[2][3] -0.7341 _pdbx_refine_tls.S[1][1] 0.2674 _pdbx_refine_tls.S[1][2] -0.0722 _pdbx_refine_tls.S[1][3] 0.4007 _pdbx_refine_tls.S[2][1] -0.3023 _pdbx_refine_tls.S[2][2] 0.0747 _pdbx_refine_tls.S[2][3] 0.7186 _pdbx_refine_tls.S[3][1] -0.2668 _pdbx_refine_tls.S[3][2] -0.2069 _pdbx_refine_tls.S[3][3] -0.3420 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 47 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 11 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 190 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 154 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-3000 phasing . ? 1 MLPHARE phasing . ? 2 DM 'model building' . ? 3 SHELXD phasing . ? 4 ARP/wARP 'model building' . ? 5 SHELXE 'model building' . ? 6 RESOLVE 'model building' . ? 7 Coot 'model building' . ? 8 CCP4 'model building' . ? 9 REFMAC refinement 5.4.0069 ? 10 HKL-3000 'data reduction' . ? 11 HKL-2000 'data scaling' . ? 12 DM phasing . ? 13 RESOLVE phasing . ? 14 CCP4 phasing . ? 15 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 48 ? NZ ? A LYS 12 NZ 2 1 Y 1 A LYS 81 ? CD ? A LYS 45 CD 3 1 Y 1 A LYS 81 ? CE ? A LYS 45 CE 4 1 Y 1 A LYS 81 ? NZ ? A LYS 45 NZ 5 1 Y 1 A GLU 85 ? CD ? A GLU 49 CD 6 1 Y 1 A GLU 85 ? OE1 ? A GLU 49 OE1 7 1 Y 1 A GLU 85 ? OE2 ? A GLU 49 OE2 8 1 Y 1 A LYS 89 ? CE ? A LYS 53 CE 9 1 Y 1 A LYS 89 ? NZ ? A LYS 53 NZ 10 1 Y 1 A LYS 91 ? NZ ? A LYS 55 NZ 11 1 Y 1 A LYS 100 ? CE ? A LYS 64 CE 12 1 Y 1 A LYS 100 ? NZ ? A LYS 64 NZ 13 1 Y 1 A ARG 113 ? CZ ? A ARG 77 CZ 14 1 Y 1 A ARG 113 ? NH1 ? A ARG 77 NH1 15 1 Y 1 A ARG 113 ? NH2 ? A ARG 77 NH2 16 1 Y 1 A LYS 154 ? CD ? A LYS 118 CD 17 1 Y 1 A LYS 154 ? CE ? A LYS 118 CE 18 1 Y 1 A LYS 154 ? NZ ? A LYS 118 NZ 19 1 Y 1 A GLN 157 ? CD ? A GLN 121 CD 20 1 Y 1 A GLN 157 ? OE1 ? A GLN 121 OE1 21 1 Y 1 A GLN 157 ? NE2 ? A GLN 121 NE2 22 1 Y 1 A ARG 172 ? NE ? A ARG 136 NE 23 1 Y 1 A ARG 172 ? CZ ? A ARG 136 CZ 24 1 Y 1 A ARG 172 ? NH1 ? A ARG 136 NH1 25 1 Y 1 A ARG 172 ? NH2 ? A ARG 136 NH2 26 1 Y 1 A LYS 177 ? CE ? A LYS 141 CE 27 1 Y 1 A LYS 177 ? NZ ? A LYS 141 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 37 ? A LYS 1 2 1 Y 1 A SER 38 ? A SER 2 3 1 Y 1 A THR 39 ? A THR 3 4 1 Y 1 A VAL 40 ? A VAL 4 5 1 Y 1 A GLU 41 ? A GLU 5 6 1 Y 1 A LYS 42 ? A LYS 6 7 1 Y 1 A SER 43 ? A SER 7 8 1 Y 1 A THR 44 ? A THR 8 9 1 Y 1 A VAL 45 ? A VAL 9 10 1 Y 1 A GLY 46 ? A GLY 10 11 1 Y 1 A ASN 192 ? A ASN 156 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH #