HEADER BIOSYNTHETIC PROTEIN 26-MAR-08 3CNM TITLE CRYSTAL STRUCTURE OF PHENAZINE BIOSYNTHESIS PROTEIN PHZA/B FROM TITLE 2 BURKHOLDERIA CEPACIA R18194, DHHA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENAZINE BIOSYNTHESIS PROTEIN A/B; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA SP.; SOURCE 3 ORGANISM_COMMON: BURKHOLDERIA CEPACIA; SOURCE 4 ORGANISM_TAXID: 36773; SOURCE 5 STRAIN: R18194; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PHENAZINE BIOSYNTHESIS, IMINE, SCHIFF BASE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.G.AHUJA,W.BLANKENFELDT REVDAT 3 30-AUG-23 3CNM 1 REMARK REVDAT 2 13-JUL-11 3CNM 1 VERSN REVDAT 1 30-DEC-08 3CNM 0 JRNL AUTH E.G.AHUJA,P.JANNING,M.MENTEL,A.GRAEBSCH,R.BREINBAUER, JRNL AUTH 2 W.HILLER,B.COSTISELLA,L.S.THOMASHOW,D.V.MAVRODI, JRNL AUTH 3 W.BLANKENFELDT JRNL TITL PHZA/B CATALYZES THE FORMATION OF THE TRICYCLE IN PHENAZINE JRNL TITL 2 BIOSYNTHESIS. JRNL REF J.AM.CHEM.SOC. V. 130 17053 2008 JRNL REFN ISSN 0002-7863 JRNL PMID 19053436 JRNL DOI 10.1021/JA806325K REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 46189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2447 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3361 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1710 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2619 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 377 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 33.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.230 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2841 ; 0.031 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2018 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3863 ; 2.319 ; 1.920 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4816 ; 1.103 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 342 ; 6.014 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;36.323 ;23.023 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 469 ;14.549 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;19.758 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 375 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3268 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 662 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 522 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2109 ; 0.223 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1306 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1528 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 256 ; 0.222 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.410 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 36 ; 0.342 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.361 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2117 ; 2.205 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 657 ; 0.530 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2623 ; 2.457 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1428 ; 4.000 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1227 ; 5.686 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 601 B 779 REMARK 3 RESIDUE RANGE : A 801 A 998 REMARK 3 RESIDUE RANGE : B 500 B 600 REMARK 3 RESIDUE RANGE : A 500 A 800 REMARK 3 RESIDUE RANGE : B 8 B 165 REMARK 3 RESIDUE RANGE : A 9 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): 37.0061 5.9718 79.8364 REMARK 3 T TENSOR REMARK 3 T11: -0.0908 T22: -0.0724 REMARK 3 T33: -0.0599 T12: 0.0070 REMARK 3 T13: 0.0034 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.8688 L22: 1.3452 REMARK 3 L33: 1.6569 L12: -0.1781 REMARK 3 L13: 0.3567 L23: -0.7116 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: 0.0522 S13: 0.0372 REMARK 3 S21: -0.0525 S22: 0.0437 S23: -0.0875 REMARK 3 S31: 0.0301 S32: -0.0370 S33: -0.0298 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; TLS-REFINEMENT WAS USED THROUGHOUT (1 TLS BODY) REMARK 4 REMARK 4 3CNM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000046992. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9809 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48675 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.13900 REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY REFINEMENT OF REMARK 200 APO STRUCTURE REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3B4O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-20% (W/V) PEG3350, 0.2 M NH4OAC, REMARK 280 0.1 M BIS-TRIS PH 6.1-6.7; COMPLEX PREPARED BY OVERNIGHT SOAKING REMARK 280 IN MOTHER LIQUOR CONTAINING 50 MM DHHA, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.70000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.85000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.85000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 107.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 VAL A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 GLU A 8 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 VAL B 4 REMARK 465 GLU B 5 REMARK 465 SER B 6 REMARK 465 LEU B 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 28 O HOH B 745 1.99 REMARK 500 NE2 GLN B 79 O HOH B 775 2.08 REMARK 500 O HOH B 617 O HOH B 686 2.12 REMARK 500 O HOH A 862 O HOH A 891 2.15 REMARK 500 O HOH A 887 O HOH A 984 2.17 REMARK 500 OE1 GLU A 28 O HOH A 919 2.18 REMARK 500 OE1 GLU A 140 O HOH A 887 2.19 REMARK 500 NE2 GLN B 90 O HOH B 676 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 88 O HOH A 928 4656 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 34 CB ARG A 34 CG -0.191 REMARK 500 CYS A 80 CA CYS A 80 CB -0.081 REMARK 500 GLU A 107 CB GLU A 107 CG -0.271 REMARK 500 GLU A 107 CG GLU A 107 CD 0.119 REMARK 500 GLU A 140 CB GLU A 140 CG -0.173 REMARK 500 GLU A 140 CD GLU A 140 OE2 -0.108 REMARK 500 ARG B 34 CB ARG B 34 CG -0.216 REMARK 500 GLU B 72 CG GLU B 72 CD 0.110 REMARK 500 GLU B 103 CD GLU B 103 OE2 0.086 REMARK 500 GLU B 137 CD GLU B 137 OE2 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 34 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 38 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 41 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 48 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 67 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 83 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ASP A 96 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 105 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 LEU A 125 CB - CG - CD2 ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG A 149 CG - CD - NE ANGL. DEV. = -13.9 DEGREES REMARK 500 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG B 24 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG B 65 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 GLU B 146 OE1 - CD - OE2 ANGL. DEV. = -7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 160 79.93 -115.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU B 140 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HHA B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HHA A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3B4O RELATED DB: PDB REMARK 900 APO STRUCTURE REMARK 900 RELATED ID: 3B4P RELATED DB: PDB REMARK 900 COMPLEX WITH 2-(CYCLOHEXYLAMINO) BENZOIC ACID DBREF 3CNM A 1 165 UNP Q396C9 Q396C9_BURS3 1 165 DBREF 3CNM B 1 165 UNP Q396C9 Q396C9_BURS3 1 165 SEQADV 3CNM MET A -19 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM GLY A -18 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM SER A -17 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM SER A -16 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM HIS A -15 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM HIS A -14 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM HIS A -13 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM HIS A -12 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM HIS A -11 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM HIS A -10 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM SER A -9 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM SER A -8 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM GLY A -7 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM LEU A -6 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM VAL A -5 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM PRO A -4 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM ARG A -3 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM GLY A -2 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM SER A -1 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM HIS A 0 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM MET B -19 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM GLY B -18 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM SER B -17 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM SER B -16 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM HIS B -15 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM HIS B -14 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM HIS B -13 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM HIS B -12 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM HIS B -11 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM HIS B -10 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM SER B -9 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM SER B -8 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM GLY B -7 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM LEU B -6 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM VAL B -5 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM PRO B -4 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM ARG B -3 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM GLY B -2 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM SER B -1 UNP Q396C9 EXPRESSION TAG SEQADV 3CNM HIS B 0 UNP Q396C9 EXPRESSION TAG SEQRES 1 A 185 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 185 LEU VAL PRO ARG GLY SER HIS MET SER ASP VAL GLU SER SEQRES 3 A 185 LEU GLU ASN THR SER GLU ASN ARG ALA GLN VAL ALA ALA SEQRES 4 A 185 ARG GLN HIS ASN ARG LYS ILE VAL GLU GLN TYR MET HIS SEQRES 5 A 185 THR ARG GLY GLU ALA ARG LEU LYS ARG HIS LEU LEU PHE SEQRES 6 A 185 THR GLU ASP GLY VAL GLY GLY LEU TRP THR THR ASP SER SEQRES 7 A 185 GLY GLN PRO ILE ALA ILE ARG GLY ARG GLU LYS LEU GLY SEQRES 8 A 185 GLU HIS ALA VAL TRP SER LEU GLN CYS PHE PRO ASP TRP SEQRES 9 A 185 VAL TRP THR ASP ILE GLN ILE PHE GLU THR GLN ASP PRO SEQRES 10 A 185 ASN TRP PHE TRP VAL GLU CYS ARG GLY GLU GLY ALA ILE SEQRES 11 A 185 VAL PHE PRO GLY TYR PRO ARG GLY GLN TYR ARG ASN HIS SEQRES 12 A 185 PHE LEU HIS SER PHE ARG PHE GLU ASN GLY LEU ILE LYS SEQRES 13 A 185 GLU GLN ARG GLU PHE MET ASN PRO CYS GLU GLN PHE ARG SEQRES 14 A 185 SER LEU GLY ILE GLU VAL PRO GLU VAL ARG ARG ASP GLY SEQRES 15 A 185 LEU PRO SER SEQRES 1 B 185 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 185 LEU VAL PRO ARG GLY SER HIS MET SER ASP VAL GLU SER SEQRES 3 B 185 LEU GLU ASN THR SER GLU ASN ARG ALA GLN VAL ALA ALA SEQRES 4 B 185 ARG GLN HIS ASN ARG LYS ILE VAL GLU GLN TYR MET HIS SEQRES 5 B 185 THR ARG GLY GLU ALA ARG LEU LYS ARG HIS LEU LEU PHE SEQRES 6 B 185 THR GLU ASP GLY VAL GLY GLY LEU TRP THR THR ASP SER SEQRES 7 B 185 GLY GLN PRO ILE ALA ILE ARG GLY ARG GLU LYS LEU GLY SEQRES 8 B 185 GLU HIS ALA VAL TRP SER LEU GLN CYS PHE PRO ASP TRP SEQRES 9 B 185 VAL TRP THR ASP ILE GLN ILE PHE GLU THR GLN ASP PRO SEQRES 10 B 185 ASN TRP PHE TRP VAL GLU CYS ARG GLY GLU GLY ALA ILE SEQRES 11 B 185 VAL PHE PRO GLY TYR PRO ARG GLY GLN TYR ARG ASN HIS SEQRES 12 B 185 PHE LEU HIS SER PHE ARG PHE GLU ASN GLY LEU ILE LYS SEQRES 13 B 185 GLU GLN ARG GLU PHE MET ASN PRO CYS GLU GLN PHE ARG SEQRES 14 B 185 SER LEU GLY ILE GLU VAL PRO GLU VAL ARG ARG ASP GLY SEQRES 15 B 185 LEU PRO SER HET ACT A 800 4 HET ACT A 600 4 HET HHA A 500 11 HET ACT B 600 4 HET HHA B 500 11 HETNAM ACT ACETATE ION HETNAM HHA (2S,3S)-TRANS-2,3-DIHYDRO-3-HYDROXYANTHRANILIC ACID FORMUL 3 ACT 3(C2 H3 O2 1-) FORMUL 5 HHA 2(C7 H9 N O3) FORMUL 8 HOH *377(H2 O) HELIX 1 1 THR A 10 THR A 33 1 24 HELIX 2 2 ARG A 34 LEU A 43 5 10 HELIX 3 3 GLY A 66 PHE A 81 1 16 HELIX 4 4 ASN A 143 LEU A 151 1 9 HELIX 5 5 THR B 10 THR B 33 1 24 HELIX 6 6 ARG B 34 LEU B 43 5 10 HELIX 7 7 GLY B 66 PHE B 81 1 16 HELIX 8 8 ASN B 143 LEU B 151 1 9 SHEET 1 A 6 ILE A 62 ARG A 65 0 SHEET 2 A 6 PHE A 45 LEU A 53 -1 N GLY A 51 O ILE A 64 SHEET 3 A 6 LEU A 134 PHE A 141 1 O GLN A 138 N VAL A 50 SHEET 4 A 6 GLY A 118 GLU A 131 -1 N LEU A 125 O PHE A 141 SHEET 5 A 6 TRP A 99 ILE A 110 -1 N GLY A 108 O TYR A 120 SHEET 6 A 6 VAL A 85 PHE A 92 -1 N PHE A 92 O TRP A 101 SHEET 1 B 6 ILE B 62 ARG B 65 0 SHEET 2 B 6 PHE B 45 LEU B 53 -1 N GLY B 51 O ILE B 64 SHEET 3 B 6 LEU B 134 PHE B 141 1 O GLN B 138 N VAL B 50 SHEET 4 B 6 GLY B 118 GLU B 131 -1 N LEU B 125 O PHE B 141 SHEET 5 B 6 TRP B 99 ILE B 110 -1 N GLY B 108 O TYR B 120 SHEET 6 B 6 VAL B 85 PHE B 92 -1 N PHE B 92 O TRP B 101 SITE 1 AC1 3 PHE A 112 GLN A 147 ARG B 160 SITE 1 AC2 2 GLN A 119 SER A 150 SITE 1 AC3 3 ARG A 160 PHE B 112 GLN B 147 SITE 1 AC4 6 ARG B 41 SER B 77 PHE B 81 TRP B 84 SITE 2 AC4 6 PHE B 124 GLU B 140 SITE 1 AC5 5 ARG A 41 PHE A 81 TRP A 84 PHE A 124 SITE 2 AC5 5 GLU A 140 CRYST1 65.090 65.090 161.550 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015363 0.008870 0.000000 0.00000 SCALE2 0.000000 0.017740 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006190 0.00000