data_3CO3 # _entry.id 3CO3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3CO3 pdb_00003co3 10.2210/pdb3co3/pdb NDB DD0094 ? ? RCSB RCSB047009 ? ? WWPDB D_1000047009 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-06-10 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3CO3 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-03-27 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lovejoy, K.S.' 1 'Todd, R.C.' 2 'Zhang, S.' 3 'McCormick, M.S.' 4 ;D'Aquino, J.A. ; 5 'Reardon, J.T.' 6 'Sancar, A.' 7 'Giacomini, K.M.' 8 'Lippard, S.J.' 9 # _citation.id primary _citation.title ;cis-Diammine(pyridine)chloroplatinum(II), a monofunctional platinum(II) antitumor agent: Uptake, structure, function, and prospects. ; _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 105 _citation.page_first 8902 _citation.page_last 8907 _citation.year 2008 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18579768 _citation.pdbx_database_id_DOI 10.1073/pnas.0803441105 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lovejoy, K.S.' 1 ? primary 'Todd, R.C.' 2 ? primary 'Zhang, S.' 3 ? primary 'McCormick, M.S.' 4 ? primary ;D'Aquino, J.A. ; 5 ? primary 'Reardon, J.T.' 6 ? primary 'Sancar, A.' 7 ? primary 'Giacomini, K.M.' 8 ? primary 'Lippard, S.J.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*DCP*DCP*DTP*DCP*DTP*DCP*DGP*DTP*DCP*DTP*DCP*DC)-3'" 3525.292 1 ? ? ? ? 2 polymer syn "5'-D(*DGP*DGP*DAP*DGP*DAP*DCP*DGP*DAP*DGP*DAP*DGP*DG)-3'" 3801.492 1 ? ? ? ? 3 non-polymer syn 'cis-diammine(pyridine)chloroplatinum(II)' 343.692 1 ? ? ? ? 4 water nat water 18.015 16 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DC)(DT)(DC)(DT)(DC)(DG)(DT)(DC)(DT)(DC)(DC)' CCTCTCGTCTCC A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DA)(DG)(DA)(DC)(DG)(DA)(DG)(DA)(DG)(DG)' GGAGACGAGAGG B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'cis-diammine(pyridine)chloroplatinum(II)' C7P 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DT n 1 4 DC n 1 5 DT n 1 6 DC n 1 7 DG n 1 8 DT n 1 9 DC n 1 10 DT n 1 11 DC n 1 12 DC n 2 1 DG n 2 2 DG n 2 3 DA n 2 4 DG n 2 5 DA n 2 6 DC n 2 7 DG n 2 8 DA n 2 9 DG n 2 10 DA n 2 11 DG n 2 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C7P non-polymer . 'cis-diammine(pyridine)chloroplatinum(II)' ? 'C5 H11 Cl N3 Pt 2' 343.692 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DC 12 12 12 DC DC A . n B 2 1 DG 1 13 13 DG DG B . n B 2 2 DG 2 14 14 DG DG B . n B 2 3 DA 3 15 15 DA DA B . n B 2 4 DG 4 16 16 DG DG B . n B 2 5 DA 5 17 17 DA DA B . n B 2 6 DC 6 18 18 DC DC B . n B 2 7 DG 7 19 19 DG DG B . n B 2 8 DA 8 20 20 DA DA B . n B 2 9 DG 9 21 21 DG DG B . n B 2 10 DA 10 22 22 DA DA B . n B 2 11 DG 11 23 23 DG DG B . n B 2 12 DG 12 24 24 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 C7P 1 25 25 C7P C7P A . D 4 HOH 1 26 1 HOH HOH A . D 4 HOH 2 27 3 HOH HOH A . D 4 HOH 3 28 5 HOH HOH A . D 4 HOH 4 29 11 HOH HOH A . D 4 HOH 5 30 14 HOH HOH A . D 4 HOH 6 31 16 HOH HOH A . E 4 HOH 1 25 2 HOH HOH B . E 4 HOH 2 26 4 HOH HOH B . E 4 HOH 3 27 6 HOH HOH B . E 4 HOH 4 28 7 HOH HOH B . E 4 HOH 5 29 8 HOH HOH B . E 4 HOH 6 30 9 HOH HOH B . E 4 HOH 7 31 10 HOH HOH B . E 4 HOH 8 32 12 HOH HOH B . E 4 HOH 9 33 13 HOH HOH B . E 4 HOH 10 34 15 HOH HOH B . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 SHARP . ? package 'de La Fortelle' sharp-develop@globalphasing.com phasing http://babinet.globalphasing.com/sharp/ ? ? 3 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 PDB_EXTRACT 3.005 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 8 # _cell.length_a 46.440 _cell.length_b 66.010 _cell.length_c 56.050 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3CO3 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.entry_id 3CO3 _symmetry.Int_Tables_number 20 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 2 _exptl.entry_id 3CO3 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.93 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 58.04 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 277.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '120 mM Mg(acetate), 50 mM Na cacodylate, 1 mM spermine, 28% w/v PEG4000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'Mg(acetate)' ? ? ? 1 2 1 'Na cacodylate' ? ? ? 1 3 1 spermine ? ? ? 1 4 1 PEG4000 ? ? ? 1 5 1 H2O ? ? ? 1 6 2 'Mg(acetate)' ? ? ? 1 7 2 'Na cacodylate' ? ? ? 1 8 2 spermine ? ? ? 1 9 2 PEG4000 ? ? ? 1 10 2 H2O ? ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 315' 2007-04-04 ? 2 CCD 'MARMOSAIC 325 mm CCD' 2007-07-05 'Flat collimating mirror, toroid focusing mirror' # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 1 'SINGLE WAVELENGTH' 'Si(111)' M x-ray 2 1 'SINGLE WAVELENGTH' 'Double crystal monochromator' M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.072 1.0 2 0.984 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'APS BEAMLINE 24-ID-C' ? 1.072 APS 24-ID-C 2 SYNCHROTRON 'SSRL BEAMLINE BL9-2' ? 0.984 SSRL BL9-2 # _reflns.entry_id 3CO3 _reflns.d_resolution_high 2.170 _reflns.d_resolution_low 50.000 _reflns.number_obs 4765 _reflns.pdbx_Rmerge_I_obs 0.107 _reflns.pdbx_netI_over_sigmaI 18.100 _reflns.pdbx_chi_squared 0.989 _reflns.pdbx_redundancy 6.900 _reflns.percent_possible_obs 96.000 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.number_all 4836 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.17 2.25 ? ? ? 0.556 ? ? 0.652 6.80 ? 367 76.00 ? 1 2.25 2.34 ? ? ? 0.576 ? ? 1.276 6.10 ? 465 97.90 ? 2 2.34 2.44 ? ? ? 0.232 ? ? 0.645 7.20 ? 497 100.00 ? 3 2.44 2.57 ? ? ? 0.175 ? ? 1.102 7.30 ? 486 100.00 ? 4 2.57 2.73 ? ? ? 0.126 ? ? 1.054 7.20 ? 490 100.00 ? 5 2.73 2.95 ? ? ? 0.109 ? ? 1.065 7.20 ? 491 100.00 ? 6 2.95 3.24 ? ? ? 0.107 ? ? 1.030 7.20 ? 485 100.00 ? 7 3.24 3.71 ? ? ? 0.093 ? ? 1.020 7.00 ? 484 95.30 ? 8 3.71 4.67 ? ? ? 0.094 ? ? 0.990 6.80 ? 499 98.60 ? 9 4.67 50.00 ? ? ? 0.106 ? ? 1.026 6.30 ? 501 92.10 ? 10 # _refine.entry_id 3CO3 _refine.ls_d_res_high 2.160 _refine.ls_d_res_low 28.440 _refine.pdbx_ls_sigma_F 2.0 _refine.ls_percent_reflns_obs 95.410 _refine.ls_number_reflns_obs 4614 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_obs 0.227 _refine.ls_R_factor_R_work 0.225 _refine.ls_R_factor_R_free 0.254 _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 216 _refine.B_iso_mean 42.444 _refine.aniso_B[1][1] 0.090 _refine.aniso_B[2][2] 0.040 _refine.aniso_B[3][3] -0.130 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.937 _refine.pdbx_overall_ESU_R 0.234 _refine.pdbx_overall_ESU_R_Free 0.193 _refine.overall_SU_ML 0.146 _refine.overall_SU_B 6.136 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 4836 _refine.ls_R_factor_all 0.248 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 16 _refine_hist.number_atoms_total 511 _refine_hist.d_res_high 2.160 _refine_hist.d_res_low 28.440 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 554 0.006 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 844 1.435 3.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 94 0.089 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 254 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 87 0.213 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 307 0.349 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 9 0.125 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 14 0.142 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 5 0.218 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2 6.168 1.500 ? 'X-RAY DIFFRACTION' ? r_scbond_it 792 5.863 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 844 7.387 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.162 _refine_ls_shell.d_res_low 2.218 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 81.480 _refine_ls_shell.number_reflns_R_work 274 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.443 _refine_ls_shell.R_factor_R_free 0.449 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 12 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 286 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3CO3 _struct.title ;X-Ray Crystal Structure of a Monofunctional Platinum-DNA Adduct, cis-{Pt(NH3)2(pyridine)}2+ Bound to Deoxyguanosine in a Dodecamer Duplex ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3CO3 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'PLATINUM-DNA DUPLEX, CISPLATIN, MONOFUNCTIONAL PT COMPOUND, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3CO3 3CO3 1 ? CCTCTCGTCTCC ? 2 PDB 3CO3 3CO3 2 ? GGAGACGAGAGG ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3CO3 A 1 ? 12 ? 3CO3 1 ? 12 ? 1 12 2 2 3CO3 B 1 ? 12 ? 3CO3 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 7 N7 ? ? ? 1_555 C C7P . PT1 ? ? A DG 7 A C7P 25 1_555 ? ? ? ? ? ? ? 1.947 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 2 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 3 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 3 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 5 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 5 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 6 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 6 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 6 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 7 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 10 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 12 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 7 ? A DG 7 ? 1_555 PT1 ? C C7P . ? A C7P 25 ? 1_555 N1 ? C C7P . ? A C7P 25 ? 1_555 93.3 ? 2 N7 ? A DG 7 ? A DG 7 ? 1_555 PT1 ? C C7P . ? A C7P 25 ? 1_555 N3 ? C C7P . ? A C7P 25 ? 1_555 177.9 ? 3 N1 ? C C7P . ? A C7P 25 ? 1_555 PT1 ? C C7P . ? A C7P 25 ? 1_555 N3 ? C C7P . ? A C7P 25 ? 1_555 86.6 ? 4 N7 ? A DG 7 ? A DG 7 ? 1_555 PT1 ? C C7P . ? A C7P 25 ? 1_555 N2 ? C C7P . ? A C7P 25 ? 1_555 95.7 ? 5 N1 ? C C7P . ? A C7P 25 ? 1_555 PT1 ? C C7P . ? A C7P 25 ? 1_555 N2 ? C C7P . ? A C7P 25 ? 1_555 170.9 ? 6 N3 ? C C7P . ? A C7P 25 ? 1_555 PT1 ? C C7P . ? A C7P 25 ? 1_555 N2 ? C C7P . ? A C7P 25 ? 1_555 84.3 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A C7P 25 ? 5 'BINDING SITE FOR RESIDUE C7P A 25' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 DC A 6 ? DC A 6 . ? 1_555 ? 2 AC1 5 DG A 7 ? DG A 7 . ? 1_555 ? 3 AC1 5 DT A 8 ? DT A 8 . ? 1_555 ? 4 AC1 5 HOH D . ? HOH A 31 . ? 1_555 ? 5 AC1 5 DG B 4 ? DG B 16 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 110.16 108.30 1.86 0.30 N 2 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 112.05 108.30 3.75 0.30 N 3 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.27 108.30 1.97 0.30 N 4 1 "O4'" B DC 18 ? ? "C1'" B DC 18 ? ? N1 B DC 18 ? ? 112.85 108.30 4.55 0.30 N 5 1 "C3'" B DG 21 ? ? "C2'" B DG 21 ? ? "C1'" B DG 21 ? ? 96.34 102.40 -6.06 0.80 N 6 1 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 111.11 108.30 2.81 0.30 N 7 1 "O4'" B DG 23 ? ? "C1'" B DG 23 ? ? N9 B DG 23 ? ? 112.40 108.30 4.10 0.30 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MAJOR GROOVE BINDER' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.720 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 4231 _diffrn_reflns.pdbx_Rmerge_I_obs 0.073 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 7.54 _diffrn_reflns.av_sigmaI_over_netI 23.20 _diffrn_reflns.pdbx_redundancy 6.30 _diffrn_reflns.pdbx_percent_possible_obs 94.20 _diffrn_reflns.number 26784 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 5.86 50.00 ? ? 0.051 ? 7.476 7.20 95.60 1 4.65 5.86 ? ? 0.058 ? 6.234 7.40 99.60 1 4.06 4.65 ? ? 0.068 ? 5.621 7.50 100.00 1 3.69 4.06 ? ? 0.086 ? 6.582 7.60 100.00 1 3.43 3.69 ? ? 0.104 ? 11.747 7.40 99.80 1 3.22 3.43 ? ? 0.131 ? 18.266 7.00 92.90 1 3.06 3.22 ? ? 0.122 ? 4.150 6.00 99.80 1 2.93 3.06 ? ? 0.135 ? 1.964 5.00 94.30 1 2.82 2.93 ? ? 0.139 ? 1.461 3.90 86.30 1 2.72 2.82 ? ? 0.176 ? 1.537 3.10 73.60 # loop_ _pdbx_phasing_MAD_set.id _pdbx_phasing_MAD_set.d_res_low _pdbx_phasing_MAD_set.d_res_high _pdbx_phasing_MAD_set.reflns_acentric _pdbx_phasing_MAD_set.reflns_centric _pdbx_phasing_MAD_set.power_acentric _pdbx_phasing_MAD_set.power_centric ISO_1 33.19 2.72 1887 442 0.000 0.000 ANO_1 33.19 2.72 1839 0 3.830 0.000 # loop_ _pdbx_phasing_MAD_set_shell.id _pdbx_phasing_MAD_set_shell.d_res_low _pdbx_phasing_MAD_set_shell.d_res_high _pdbx_phasing_MAD_set_shell.reflns_acentric _pdbx_phasing_MAD_set_shell.reflns_centric _pdbx_phasing_MAD_set_shell.power_acentric _pdbx_phasing_MAD_set_shell.power_centric ISO_1 33.19 7.96 58 45 0.000 0.000 ISO_1 7.96 5.71 125 50 0.000 0.000 ISO_1 5.71 4.68 172 49 0.000 0.000 ISO_1 4.68 4.07 202 52 0.000 0.000 ISO_1 4.07 3.64 231 51 0.000 0.000 ISO_1 3.64 3.33 258 44 0.000 0.000 ISO_1 3.33 3.08 268 54 0.000 0.000 ISO_1 3.08 2.89 297 45 0.000 0.000 ISO_1 2.89 2.72 276 52 0.000 0.000 ANO_1 33.19 7.96 55 0 8.335 0.000 ANO_1 7.96 5.71 125 0 6.431 0.000 ANO_1 5.71 4.68 172 0 4.666 0.000 ANO_1 4.68 4.07 202 0 3.548 0.000 ANO_1 4.07 3.64 231 0 2.812 0.000 ANO_1 3.64 3.33 257 0 2.297 0.000 ANO_1 3.33 3.08 267 0 1.815 0.000 ANO_1 3.08 2.89 286 0 1.425 0.000 ANO_1 2.89 2.72 244 0 0.991 0.000 # _pdbx_phasing_MAD_set_site.id 1 _pdbx_phasing_MAD_set_site.atom_type_symbol PT _pdbx_phasing_MAD_set_site.Cartn_x 17.103 _pdbx_phasing_MAD_set_site.Cartn_y 4.064 _pdbx_phasing_MAD_set_site.Cartn_z 7.169 _pdbx_phasing_MAD_set_site.occupancy 0.91 _pdbx_phasing_MAD_set_site.b_iso 86.63 # _phasing.method SAD # _pdbx_entry_details.entry_id 3CO3 _pdbx_entry_details.nonpolymer_details 'C7P IS AN ANTITUMOR AGENT BOUND TO DG 7 A.' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C7P N1 N Y N 1 C7P C1 C Y N 2 C7P C2 C Y N 3 C7P C3 C Y N 4 C7P C4 C Y N 5 C7P C5 C Y N 6 C7P PT1 PT N N 7 C7P N2 N N N 8 C7P N3 N N N 9 C7P H2 H N N 10 C7P H3 H N N 11 C7P H4 H N N 12 C7P H5 H N N 13 C7P H6 H N N 14 C7P CL1 CL N N 15 C7P HN H N N 16 C7P HNA H N N 17 C7P HNB H N N 18 C7P HNC H N N 19 C7P HND H N N 20 C7P HNE H N N 21 DA OP3 O N N 22 DA P P N N 23 DA OP1 O N N 24 DA OP2 O N N 25 DA "O5'" O N N 26 DA "C5'" C N N 27 DA "C4'" C N R 28 DA "O4'" O N N 29 DA "C3'" C N S 30 DA "O3'" O N N 31 DA "C2'" C N N 32 DA "C1'" C N R 33 DA N9 N Y N 34 DA C8 C Y N 35 DA N7 N Y N 36 DA C5 C Y N 37 DA C6 C Y N 38 DA N6 N N N 39 DA N1 N Y N 40 DA C2 C Y N 41 DA N3 N Y N 42 DA C4 C Y N 43 DA HOP3 H N N 44 DA HOP2 H N N 45 DA "H5'" H N N 46 DA "H5''" H N N 47 DA "H4'" H N N 48 DA "H3'" H N N 49 DA "HO3'" H N N 50 DA "H2'" H N N 51 DA "H2''" H N N 52 DA "H1'" H N N 53 DA H8 H N N 54 DA H61 H N N 55 DA H62 H N N 56 DA H2 H N N 57 DC OP3 O N N 58 DC P P N N 59 DC OP1 O N N 60 DC OP2 O N N 61 DC "O5'" O N N 62 DC "C5'" C N N 63 DC "C4'" C N R 64 DC "O4'" O N N 65 DC "C3'" C N S 66 DC "O3'" O N N 67 DC "C2'" C N N 68 DC "C1'" C N R 69 DC N1 N N N 70 DC C2 C N N 71 DC O2 O N N 72 DC N3 N N N 73 DC C4 C N N 74 DC N4 N N N 75 DC C5 C N N 76 DC C6 C N N 77 DC HOP3 H N N 78 DC HOP2 H N N 79 DC "H5'" H N N 80 DC "H5''" H N N 81 DC "H4'" H N N 82 DC "H3'" H N N 83 DC "HO3'" H N N 84 DC "H2'" H N N 85 DC "H2''" H N N 86 DC "H1'" H N N 87 DC H41 H N N 88 DC H42 H N N 89 DC H5 H N N 90 DC H6 H N N 91 DG OP3 O N N 92 DG P P N N 93 DG OP1 O N N 94 DG OP2 O N N 95 DG "O5'" O N N 96 DG "C5'" C N N 97 DG "C4'" C N R 98 DG "O4'" O N N 99 DG "C3'" C N S 100 DG "O3'" O N N 101 DG "C2'" C N N 102 DG "C1'" C N R 103 DG N9 N Y N 104 DG C8 C Y N 105 DG N7 N Y N 106 DG C5 C Y N 107 DG C6 C N N 108 DG O6 O N N 109 DG N1 N N N 110 DG C2 C N N 111 DG N2 N N N 112 DG N3 N N N 113 DG C4 C Y N 114 DG HOP3 H N N 115 DG HOP2 H N N 116 DG "H5'" H N N 117 DG "H5''" H N N 118 DG "H4'" H N N 119 DG "H3'" H N N 120 DG "HO3'" H N N 121 DG "H2'" H N N 122 DG "H2''" H N N 123 DG "H1'" H N N 124 DG H8 H N N 125 DG H1 H N N 126 DG H21 H N N 127 DG H22 H N N 128 DT OP3 O N N 129 DT P P N N 130 DT OP1 O N N 131 DT OP2 O N N 132 DT "O5'" O N N 133 DT "C5'" C N N 134 DT "C4'" C N R 135 DT "O4'" O N N 136 DT "C3'" C N S 137 DT "O3'" O N N 138 DT "C2'" C N N 139 DT "C1'" C N R 140 DT N1 N N N 141 DT C2 C N N 142 DT O2 O N N 143 DT N3 N N N 144 DT C4 C N N 145 DT O4 O N N 146 DT C5 C N N 147 DT C7 C N N 148 DT C6 C N N 149 DT HOP3 H N N 150 DT HOP2 H N N 151 DT "H5'" H N N 152 DT "H5''" H N N 153 DT "H4'" H N N 154 DT "H3'" H N N 155 DT "HO3'" H N N 156 DT "H2'" H N N 157 DT "H2''" H N N 158 DT "H1'" H N N 159 DT H3 H N N 160 DT H71 H N N 161 DT H72 H N N 162 DT H73 H N N 163 DT H6 H N N 164 HOH O O N N 165 HOH H1 H N N 166 HOH H2 H N N 167 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C7P N1 C1 doub Y N 1 C7P N1 C5 sing Y N 2 C7P C1 C2 sing Y N 3 C7P C1 H2 sing N N 4 C7P C2 C3 doub Y N 5 C7P C2 H3 sing N N 6 C7P C3 C4 sing Y N 7 C7P C3 H4 sing N N 8 C7P C4 C5 doub Y N 9 C7P C4 H5 sing N N 10 C7P C5 H6 sing N N 11 C7P N1 PT1 sing N N 12 C7P PT1 CL1 sing N N 13 C7P PT1 N3 sing N N 14 C7P PT1 N2 sing N N 15 C7P N2 HN sing N N 16 C7P N2 HNA sing N N 17 C7P N3 HNB sing N N 18 C7P N3 HNC sing N N 19 C7P N2 HND sing N N 20 C7P N3 HNE sing N N 21 DA OP3 P sing N N 22 DA OP3 HOP3 sing N N 23 DA P OP1 doub N N 24 DA P OP2 sing N N 25 DA P "O5'" sing N N 26 DA OP2 HOP2 sing N N 27 DA "O5'" "C5'" sing N N 28 DA "C5'" "C4'" sing N N 29 DA "C5'" "H5'" sing N N 30 DA "C5'" "H5''" sing N N 31 DA "C4'" "O4'" sing N N 32 DA "C4'" "C3'" sing N N 33 DA "C4'" "H4'" sing N N 34 DA "O4'" "C1'" sing N N 35 DA "C3'" "O3'" sing N N 36 DA "C3'" "C2'" sing N N 37 DA "C3'" "H3'" sing N N 38 DA "O3'" "HO3'" sing N N 39 DA "C2'" "C1'" sing N N 40 DA "C2'" "H2'" sing N N 41 DA "C2'" "H2''" sing N N 42 DA "C1'" N9 sing N N 43 DA "C1'" "H1'" sing N N 44 DA N9 C8 sing Y N 45 DA N9 C4 sing Y N 46 DA C8 N7 doub Y N 47 DA C8 H8 sing N N 48 DA N7 C5 sing Y N 49 DA C5 C6 sing Y N 50 DA C5 C4 doub Y N 51 DA C6 N6 sing N N 52 DA C6 N1 doub Y N 53 DA N6 H61 sing N N 54 DA N6 H62 sing N N 55 DA N1 C2 sing Y N 56 DA C2 N3 doub Y N 57 DA C2 H2 sing N N 58 DA N3 C4 sing Y N 59 DC OP3 P sing N N 60 DC OP3 HOP3 sing N N 61 DC P OP1 doub N N 62 DC P OP2 sing N N 63 DC P "O5'" sing N N 64 DC OP2 HOP2 sing N N 65 DC "O5'" "C5'" sing N N 66 DC "C5'" "C4'" sing N N 67 DC "C5'" "H5'" sing N N 68 DC "C5'" "H5''" sing N N 69 DC "C4'" "O4'" sing N N 70 DC "C4'" "C3'" sing N N 71 DC "C4'" "H4'" sing N N 72 DC "O4'" "C1'" sing N N 73 DC "C3'" "O3'" sing N N 74 DC "C3'" "C2'" sing N N 75 DC "C3'" "H3'" sing N N 76 DC "O3'" "HO3'" sing N N 77 DC "C2'" "C1'" sing N N 78 DC "C2'" "H2'" sing N N 79 DC "C2'" "H2''" sing N N 80 DC "C1'" N1 sing N N 81 DC "C1'" "H1'" sing N N 82 DC N1 C2 sing N N 83 DC N1 C6 sing N N 84 DC C2 O2 doub N N 85 DC C2 N3 sing N N 86 DC N3 C4 doub N N 87 DC C4 N4 sing N N 88 DC C4 C5 sing N N 89 DC N4 H41 sing N N 90 DC N4 H42 sing N N 91 DC C5 C6 doub N N 92 DC C5 H5 sing N N 93 DC C6 H6 sing N N 94 DG OP3 P sing N N 95 DG OP3 HOP3 sing N N 96 DG P OP1 doub N N 97 DG P OP2 sing N N 98 DG P "O5'" sing N N 99 DG OP2 HOP2 sing N N 100 DG "O5'" "C5'" sing N N 101 DG "C5'" "C4'" sing N N 102 DG "C5'" "H5'" sing N N 103 DG "C5'" "H5''" sing N N 104 DG "C4'" "O4'" sing N N 105 DG "C4'" "C3'" sing N N 106 DG "C4'" "H4'" sing N N 107 DG "O4'" "C1'" sing N N 108 DG "C3'" "O3'" sing N N 109 DG "C3'" "C2'" sing N N 110 DG "C3'" "H3'" sing N N 111 DG "O3'" "HO3'" sing N N 112 DG "C2'" "C1'" sing N N 113 DG "C2'" "H2'" sing N N 114 DG "C2'" "H2''" sing N N 115 DG "C1'" N9 sing N N 116 DG "C1'" "H1'" sing N N 117 DG N9 C8 sing Y N 118 DG N9 C4 sing Y N 119 DG C8 N7 doub Y N 120 DG C8 H8 sing N N 121 DG N7 C5 sing Y N 122 DG C5 C6 sing N N 123 DG C5 C4 doub Y N 124 DG C6 O6 doub N N 125 DG C6 N1 sing N N 126 DG N1 C2 sing N N 127 DG N1 H1 sing N N 128 DG C2 N2 sing N N 129 DG C2 N3 doub N N 130 DG N2 H21 sing N N 131 DG N2 H22 sing N N 132 DG N3 C4 sing N N 133 DT OP3 P sing N N 134 DT OP3 HOP3 sing N N 135 DT P OP1 doub N N 136 DT P OP2 sing N N 137 DT P "O5'" sing N N 138 DT OP2 HOP2 sing N N 139 DT "O5'" "C5'" sing N N 140 DT "C5'" "C4'" sing N N 141 DT "C5'" "H5'" sing N N 142 DT "C5'" "H5''" sing N N 143 DT "C4'" "O4'" sing N N 144 DT "C4'" "C3'" sing N N 145 DT "C4'" "H4'" sing N N 146 DT "O4'" "C1'" sing N N 147 DT "C3'" "O3'" sing N N 148 DT "C3'" "C2'" sing N N 149 DT "C3'" "H3'" sing N N 150 DT "O3'" "HO3'" sing N N 151 DT "C2'" "C1'" sing N N 152 DT "C2'" "H2'" sing N N 153 DT "C2'" "H2''" sing N N 154 DT "C1'" N1 sing N N 155 DT "C1'" "H1'" sing N N 156 DT N1 C2 sing N N 157 DT N1 C6 sing N N 158 DT C2 O2 doub N N 159 DT C2 N3 sing N N 160 DT N3 C4 sing N N 161 DT N3 H3 sing N N 162 DT C4 O4 doub N N 163 DT C4 C5 sing N N 164 DT C5 C7 sing N N 165 DT C5 C6 doub N N 166 DT C7 H71 sing N N 167 DT C7 H72 sing N N 168 DT C7 H73 sing N N 169 DT C6 H6 sing N N 170 HOH O H1 sing N N 171 HOH O H2 sing N N 172 # _ndb_struct_conf_na.entry_id 3CO3 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.037 -0.123 0.450 -1.995 -11.085 -1.099 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DC 2 1_555 B DG 11 1_555 0.430 0.026 0.693 -8.956 -14.959 1.297 2 A_DC2:DG23_B A 2 ? B 23 ? 19 1 1 A DT 3 1_555 B DA 10 1_555 0.311 0.027 0.368 -1.910 -18.187 -0.076 3 A_DT3:DA22_B A 3 ? B 22 ? 20 1 1 A DC 4 1_555 B DG 9 1_555 0.608 0.056 0.045 -0.832 -18.015 1.669 4 A_DC4:DG21_B A 4 ? B 21 ? 19 1 1 A DT 5 1_555 B DA 8 1_555 -0.235 -0.080 0.055 -0.187 -18.746 -1.203 5 A_DT5:DA20_B A 5 ? B 20 ? 20 1 1 A DC 6 1_555 B DG 7 1_555 0.221 -0.104 0.064 -4.614 -14.216 -0.988 6 A_DC6:DG19_B A 6 ? B 19 ? 19 1 1 A DG 7 1_555 B DC 6 1_555 0.051 -0.083 -0.108 -3.876 -13.145 -0.840 7 A_DG7:DC18_B A 7 ? B 18 ? 19 1 1 A DT 8 1_555 B DA 5 1_555 -0.112 0.127 0.059 -2.093 -15.075 -0.957 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 -0.009 -0.168 -0.034 -1.447 -13.420 -2.329 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DT 10 1_555 B DA 3 1_555 -0.238 -0.058 -0.029 4.784 -16.267 1.330 10 A_DT10:DA15_B A 10 ? B 15 ? 20 1 1 A DC 11 1_555 B DG 2 1_555 -0.235 0.029 0.146 -1.952 -9.496 -0.239 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DC 12 1_555 B DG 1 1_555 0.340 0.060 0.521 -5.340 -8.096 -0.269 12 A_DC12:DG13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DC 2 1_555 B DG 11 1_555 -0.516 -0.184 3.526 -3.175 1.539 36.893 -0.514 0.352 3.546 2.425 5.002 37.055 1 AA_DC1DC2:DG23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DC 2 1_555 B DG 11 1_555 A DT 3 1_555 B DA 10 1_555 -0.398 0.281 3.175 1.618 1.150 30.962 0.312 1.046 3.159 2.151 -3.026 31.024 2 AA_DC2DT3:DA22DG23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DT 3 1_555 B DA 10 1_555 A DC 4 1_555 B DG 9 1_555 0.613 0.895 3.287 3.693 -1.202 41.301 1.392 -0.469 3.302 -1.699 -5.221 41.475 3 AA_DT3DC4:DG21DA22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DC 4 1_555 B DG 9 1_555 A DT 5 1_555 B DA 8 1_555 -0.989 0.169 3.322 -1.849 5.187 27.923 -0.882 1.576 3.355 10.619 3.785 28.451 4 AA_DC4DT5:DA20DG21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DT 5 1_555 B DA 8 1_555 A DC 6 1_555 B DG 7 1_555 0.362 0.255 3.459 2.239 1.269 39.436 0.218 -0.256 3.480 1.878 -3.314 39.517 5 AA_DT5DC6:DG19DA20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DC 6 1_555 B DG 7 1_555 A DG 7 1_555 B DC 6 1_555 1.150 0.815 3.424 5.772 1.723 33.344 1.099 -0.968 3.603 2.973 -9.958 33.869 6 AA_DC6DG7:DC18DG19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DG 7 1_555 B DC 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.911 -0.460 3.270 -2.580 2.925 31.020 -1.410 1.199 3.277 5.441 4.801 31.259 7 AA_DG7DT8:DA17DC18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 0.505 0.297 3.205 2.078 2.351 40.959 0.171 -0.498 3.237 3.354 -2.965 41.073 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DT 10 1_555 B DA 3 1_555 -0.315 0.130 3.249 -0.342 4.130 28.387 -0.666 0.560 3.238 8.365 0.693 28.682 9 AA_DC9DT10:DA15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DT 10 1_555 B DA 3 1_555 A DC 11 1_555 B DG 2 1_555 0.960 0.674 3.397 3.507 4.447 39.353 0.443 -0.979 3.519 6.562 -5.175 39.743 10 AA_DT10DC11:DG14DA15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DC 12 1_555 B DG 1 1_555 -0.003 0.110 3.498 -3.486 -1.526 40.037 0.344 -0.418 3.480 -2.222 5.077 40.210 11 AA_DC11DC12:DG13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 3CO3 _atom_sites.fract_transf_matrix[1][1] 0.021533 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015149 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017841 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P PT # loop_