data_3COQ # _entry.id 3COQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.313 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3COQ NDB PD1101 RCSB RCSB047032 WWPDB D_1000047032 # _pdbx_database_status.entry_id 3COQ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-03-29 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hong, M.' 1 'Fitzgerald, M.X.' 2 'Harper, S.' 3 'Luo, C.' 4 'Speicher, D.W.' 5 # _citation.id primary _citation.title 'Structural basis for dimerization in DNA recognition by gal4.' _citation.journal_abbrev Structure _citation.journal_volume 16 _citation.page_first 1019 _citation.page_last 1026 _citation.year 2008 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18611375 _citation.pdbx_database_id_DOI 10.1016/j.str.2008.03.015 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hong, M.' 1 ? primary 'Fitzgerald, M.X.' 2 ? primary 'Harper, S.' 3 ? primary 'Luo, C.' 4 ? primary 'Speicher, D.W.' 5 ? primary 'Marmorstein, R.' 6 ? # _cell.length_a 126.495 _cell.length_b 40.829 _cell.length_c 90.418 _cell.angle_alpha 90.000 _cell.angle_beta 95.880 _cell.angle_gamma 90.000 _cell.entry_id 3COQ _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 3COQ _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*DAP*DCP*DCP*DGP*DGP*DAP*DGP*DGP*DAP*DCP*DAP*DGP*DTP*DCP*DCP*DTP*DCP*DCP*DGP*DG)-3') ; 6144.968 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*DTP*DCP*DCP*DGP*DGP*DAP*DGP*DGP*DAP*DCP*DTP*DGP*DTP*DCP*DCP*DTP*DCP*DCP*DGP*DG)-3') ; 6126.940 1 ? ? ? ? 3 polymer man 'Regulatory protein GAL4' 10484.505 2 ? ? 'DNA binding domain with complete dimerization domain' ? 4 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 5 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? 6 water nat water 18.015 33 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DC)(DC)(DG)(DG)(DA)(DG)(DG)(DA)(DC)(DA)(DG)(DT)(DC)(DC)(DT)(DC)(DC)(DG)(DG)' ACCGGAGGACAGTCCTCCGG D ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DC)(DG)(DG)(DA)(DG)(DG)(DA)(DC)(DT)(DG)(DT)(DC)(DC)(DT)(DC)(DC)(DG)(DG)' TCCGGAGGACTGTCCTCCGG E ? 3 'polypeptide(L)' no no ;EQACDICRLKKLKCSKEKPKCAKCLKNNWECRYSPKTKRSPLTRAHLTEVESRLERLEQLFLLIFPREDLDMILKMDSLQ DIKALLTGL ; ;EQACDICRLKKLKCSKEKPKCAKCLKNNWECRYSPKTKRSPLTRAHLTEVESRLERLEQLFLLIFPREDLDMILKMDSLQ DIKALLTGL ; A,B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DC n 1 4 DG n 1 5 DG n 1 6 DA n 1 7 DG n 1 8 DG n 1 9 DA n 1 10 DC n 1 11 DA n 1 12 DG n 1 13 DT n 1 14 DC n 1 15 DC n 1 16 DT n 1 17 DC n 1 18 DC n 1 19 DG n 1 20 DG n 2 1 DT n 2 2 DC n 2 3 DC n 2 4 DG n 2 5 DG n 2 6 DA n 2 7 DG n 2 8 DG n 2 9 DA n 2 10 DC n 2 11 DT n 2 12 DG n 2 13 DT n 2 14 DC n 2 15 DC n 2 16 DT n 2 17 DC n 2 18 DC n 2 19 DG n 2 20 DG n 3 1 GLU n 3 2 GLN n 3 3 ALA n 3 4 CYS n 3 5 ASP n 3 6 ILE n 3 7 CYS n 3 8 ARG n 3 9 LEU n 3 10 LYS n 3 11 LYS n 3 12 LEU n 3 13 LYS n 3 14 CYS n 3 15 SER n 3 16 LYS n 3 17 GLU n 3 18 LYS n 3 19 PRO n 3 20 LYS n 3 21 CYS n 3 22 ALA n 3 23 LYS n 3 24 CYS n 3 25 LEU n 3 26 LYS n 3 27 ASN n 3 28 ASN n 3 29 TRP n 3 30 GLU n 3 31 CYS n 3 32 ARG n 3 33 TYR n 3 34 SER n 3 35 PRO n 3 36 LYS n 3 37 THR n 3 38 LYS n 3 39 ARG n 3 40 SER n 3 41 PRO n 3 42 LEU n 3 43 THR n 3 44 ARG n 3 45 ALA n 3 46 HIS n 3 47 LEU n 3 48 THR n 3 49 GLU n 3 50 VAL n 3 51 GLU n 3 52 SER n 3 53 ARG n 3 54 LEU n 3 55 GLU n 3 56 ARG n 3 57 LEU n 3 58 GLU n 3 59 GLN n 3 60 LEU n 3 61 PHE n 3 62 LEU n 3 63 LEU n 3 64 ILE n 3 65 PHE n 3 66 PRO n 3 67 ARG n 3 68 GLU n 3 69 ASP n 3 70 LEU n 3 71 ASP n 3 72 MET n 3 73 ILE n 3 74 LEU n 3 75 LYS n 3 76 MET n 3 77 ASP n 3 78 SER n 3 79 LEU n 3 80 GLN n 3 81 ASP n 3 82 ILE n 3 83 LYS n 3 84 ALA n 3 85 LEU n 3 86 LEU n 3 87 THR n 3 88 GLY n 3 89 LEU n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ;Baker's yeast ; _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene GAL4 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'synthetic construct' ? 32630 ? 2 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP GAL4_YEAST P04386 3 ;EQACDICRLKKLKCSKEKPKCAKCLKNNWECRYSPKTKRSPLTRAHLTEVESRLERLEQLFLLIFPREDLDMILKMDSLQ DIKALLTGL ; 8 ? 2 PDB 3COQ 3COQ 1 ? ? ? 3 PDB 3COQ 3COQ 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3COQ A 1 ? 89 ? P04386 8 ? 96 ? 8 96 2 1 3COQ B 1 ? 89 ? P04386 8 ? 96 ? 8 96 3 2 3COQ D 1 ? 20 ? 3COQ 1 ? 20 ? 1 20 4 3 3COQ E 1 ? 20 ? 3COQ 21 ? 40 ? 21 40 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.entry_id 3COQ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.49 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 64.79 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '40mM Mg(OAc)2, 25mM sodium phosphate, 5% PEG400, 5% MPD, pH 5.5, VAPOR DIFFUSION, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'Mg(OAc)2' ? ? ? 1 2 1 'sodium phosphate' ? ? ? 1 3 1 PEG400 ? ? ? 1 4 1 MPD ? ? ? 1 5 2 'Mg(OAc)2' ? ? ? 1 6 2 'sodium phosphate' ? ? ? 1 7 2 PEG400 ? ? ? 1 8 2 MPD ? ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id _diffrn.pdbx_serial_crystal_experiment 1 298 ? 1 ? 2 ? ? 1 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 MAD ? 1 M x-ray 2 'SINGLE WAVELENGTH' ? 1 M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.2823 1.0 2 1.2830 1.0 3 1.2448 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'NSLS BEAMLINE X25' 1.2823,1.2830,1.2448 ? NSLS X25 2 SYNCHROTRON 'CHESS BEAMLINE F1' ? ? CHESS F1 # _reflns.entry_id 3COQ _reflns.d_resolution_high 2.40 _reflns.d_resolution_low 50.000 _reflns.number_obs 18311 _reflns.pdbx_Rmerge_I_obs 0.066 _reflns.pdbx_netI_over_sigmaI 16.400 _reflns.pdbx_chi_squared 1.079 _reflns.pdbx_redundancy 3.700 _reflns.percent_possible_obs 98.100 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.pdbx_scaling_rejects ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.417 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.963 _reflns_shell.pdbx_redundancy 3.50 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1758 _reflns_shell.percent_possible_all 97.00 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.entry_id 3COQ _refine.ls_d_res_high 2.40 _refine.ls_d_res_low 28.940 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 96.910 _refine.ls_number_reflns_obs 14040 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_obs 0.213 _refine.ls_R_factor_R_work 0.207 _refine.ls_R_factor_R_free 0.269 _refine.ls_percent_reflns_R_free 9.300 _refine.ls_number_reflns_R_free 1304 _refine.B_iso_mean 48.172 _refine.aniso_B[1][1] 0.190 _refine.aniso_B[2][2] -0.170 _refine.aniso_B[3][3] 0.020 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.230 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.911 _refine.pdbx_overall_ESU_R 0.457 _refine.pdbx_overall_ESU_R_Free 0.312 _refine.overall_SU_ML 0.227 _refine.overall_SU_B 21.794 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1454 _refine_hist.pdbx_number_atoms_nucleic_acid 814 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 2313 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 28.940 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2391 0.030 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3380 3.337 2.432 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 176 8.318 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 60 36.995 23.667 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 330 24.666 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14 19.743 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 386 0.174 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1440 0.013 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 1047 0.297 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1527 0.341 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 117 0.195 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 50 0.276 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 7 0.177 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 933 1.604 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1446 2.632 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1933 3.053 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1934 4.456 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.667 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 92.230 _refine_ls_shell.number_reflns_R_work 889 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.386 _refine_ls_shell.R_factor_R_free 0.377 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 96 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 985 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3COQ _struct.title 'Structural Basis for Dimerization in DNA Recognition by Gal4' _struct.pdbx_descriptor 'Regulatory protein GAL4/DNA Complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3COQ _struct_keywords.text ;helix bundle, Protein-DNA complex, zinc binuclear cluster, Activator, Carbohydrate metabolism, DNA-binding, Galactose metabolism, Metal-binding, Nucleus, Phosphoprotein, Transcription, Transcription regulation, Transcription-DNA COMPLEX ; _struct_keywords.pdbx_keywords Transcription/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 6 ? K N N 6 ? L N N 6 ? M N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS C 4 ? LYS C 11 ? CYS A 11 LYS A 18 1 ? 8 HELX_P HELX_P2 2 CYS C 21 ? ASN C 27 ? CYS A 28 ASN A 34 1 ? 7 HELX_P HELX_P3 3 THR C 43 ? PHE C 65 ? THR A 50 PHE A 72 1 ? 23 HELX_P HELX_P4 4 ASP C 69 ? MET C 76 ? ASP A 76 MET A 83 1 ? 8 HELX_P HELX_P5 5 SER C 78 ? THR C 87 ? SER A 85 THR A 94 1 ? 10 HELX_P HELX_P6 6 CYS D 4 ? LYS D 11 ? CYS B 11 LYS B 18 1 ? 8 HELX_P HELX_P7 7 CYS D 21 ? ASN D 28 ? CYS B 28 ASN B 35 1 ? 8 HELX_P HELX_P8 8 THR D 43 ? PHE D 65 ? THR B 50 PHE B 72 1 ? 23 HELX_P HELX_P9 9 PRO D 66 ? LYS D 75 ? PRO B 73 LYS B 82 1 ? 10 HELX_P HELX_P10 10 SER D 78 ? GLY D 88 ? SER B 85 GLY B 95 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? C CYS 4 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 11 A ZN 1002 1_555 ? ? ? ? ? ? ? 2.584 ? metalc2 metalc ? ? C CYS 4 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 11 A ZN 1001 1_555 ? ? ? ? ? ? ? 2.488 ? metalc3 metalc ? ? C CYS 7 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 14 A ZN 1001 1_555 ? ? ? ? ? ? ? 2.315 ? metalc4 metalc ? ? C CYS 21 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 28 A ZN 1002 1_555 ? ? ? ? ? ? ? 2.316 ? metalc5 metalc ? ? C CYS 21 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 28 A ZN 1001 1_555 ? ? ? ? ? ? ? 2.525 ? metalc6 metalc ? ? C CYS 24 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 31 A ZN 1002 1_555 ? ? ? ? ? ? ? 2.279 ? metalc7 metalc ? ? C CYS 31 SG ? ? ? 1_555 G ZN . ZN ? ? A CYS 38 A ZN 1002 1_555 ? ? ? ? ? ? ? 2.341 ? metalc8 metalc ? ? D CYS 4 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 11 B ZN 1 1_555 ? ? ? ? ? ? ? 2.230 ? metalc9 metalc ? ? D CYS 4 SG ? ? ? 1_555 I ZN . ZN ? ? B CYS 11 B ZN 2 1_555 ? ? ? ? ? ? ? 2.579 ? metalc10 metalc ? ? D CYS 7 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 14 B ZN 1 1_555 ? ? ? ? ? ? ? 2.224 ? metalc11 metalc ? ? D CYS 14 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 21 B ZN 1 1_555 ? ? ? ? ? ? ? 2.226 ? metalc12 metalc ? ? D CYS 21 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 28 B ZN 1 1_555 ? ? ? ? ? ? ? 2.692 ? metalc13 metalc ? ? D CYS 21 SG ? ? ? 1_555 I ZN . ZN ? ? B CYS 28 B ZN 2 1_555 ? ? ? ? ? ? ? 2.577 ? metalc14 metalc ? ? D CYS 24 SG ? ? ? 1_555 I ZN . ZN ? ? B CYS 31 B ZN 2 1_555 ? ? ? ? ? ? ? 1.955 ? metalc15 metalc ? ? D CYS 31 SG ? ? ? 1_555 I ZN . ZN ? ? B CYS 38 B ZN 2 1_555 ? ? ? ? ? ? ? 2.022 ? hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 20 N1 ? ? D DC 2 E DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 20 O6 ? ? D DC 2 E DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 20 N2 ? ? D DC 2 E DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 19 N1 ? ? D DC 3 E DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 19 O6 ? ? D DC 3 E DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 19 N2 ? ? D DC 3 E DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 18 N3 ? ? D DG 4 E DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 18 O2 ? ? D DG 4 E DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 18 N4 ? ? D DG 4 E DC 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 17 N3 ? ? D DG 5 E DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 17 O2 ? ? D DG 5 E DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 17 N4 ? ? D DG 5 E DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 16 N3 ? ? D DA 6 E DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 16 O4 ? ? D DA 6 E DT 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 15 N3 ? ? D DG 7 E DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 15 O2 ? ? D DG 7 E DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 15 N4 ? ? D DG 7 E DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 14 N3 ? ? D DG 8 E DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 14 O2 ? ? D DG 8 E DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 14 N4 ? ? D DG 8 E DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 13 N3 ? ? D DA 9 E DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 13 O4 ? ? D DA 9 E DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 12 N1 ? ? D DC 10 E DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 12 O6 ? ? D DC 10 E DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 12 N2 ? ? D DC 10 E DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 11 N3 ? ? D DA 11 E DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 11 O4 ? ? D DA 11 E DT 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 10 N3 ? ? D DG 12 E DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 10 O2 ? ? D DG 12 E DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 10 N4 ? ? D DG 12 E DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DA 9 N1 ? ? D DT 13 E DA 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DA 9 N6 ? ? D DT 13 E DA 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A DC 14 N3 ? ? ? 1_555 B DG 8 N1 ? ? D DC 14 E DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A DC 14 N4 ? ? ? 1_555 B DG 8 O6 ? ? D DC 14 E DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A DC 14 O2 ? ? ? 1_555 B DG 8 N2 ? ? D DC 14 E DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? A DC 15 N3 ? ? ? 1_555 B DG 7 N1 ? ? D DC 15 E DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? A DC 15 N4 ? ? ? 1_555 B DG 7 O6 ? ? D DC 15 E DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? A DC 15 O2 ? ? ? 1_555 B DG 7 N2 ? ? D DC 15 E DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? A DT 16 N3 ? ? ? 1_555 B DA 6 N1 ? ? D DT 16 E DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? A DT 16 O4 ? ? ? 1_555 B DA 6 N6 ? ? D DT 16 E DA 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? A DC 17 N3 ? ? ? 1_555 B DG 5 N1 ? ? D DC 17 E DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? A DC 17 N4 ? ? ? 1_555 B DG 5 O6 ? ? D DC 17 E DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? A DC 17 O2 ? ? ? 1_555 B DG 5 N2 ? ? D DC 17 E DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? A DC 18 N3 ? ? ? 1_555 B DG 4 N1 ? ? D DC 18 E DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? A DC 18 N4 ? ? ? 1_555 B DG 4 O6 ? ? D DC 18 E DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? A DC 18 O2 ? ? ? 1_555 B DG 4 N2 ? ? D DC 18 E DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? A DG 19 N1 ? ? ? 1_555 B DC 3 N3 ? ? D DG 19 E DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? A DG 19 N2 ? ? ? 1_555 B DC 3 O2 ? ? D DG 19 E DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? A DG 19 O6 ? ? ? 1_555 B DC 3 N4 ? ? D DG 19 E DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? A DG 20 N1 ? ? ? 1_555 B DC 2 N3 ? ? D DG 20 E DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog51 hydrog ? ? A DG 20 N2 ? ? ? 1_555 B DC 2 O2 ? ? D DG 20 E DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog52 hydrog ? ? A DG 20 O6 ? ? ? 1_555 B DC 2 N4 ? ? D DG 20 E DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LYS 18 C . ? LYS 25 A PRO 19 C ? PRO 26 A 1 5.06 2 LYS 18 D . ? LYS 25 B PRO 19 D ? PRO 26 B 1 14.31 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 1001' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 1002' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN B 1' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN B 2' AC5 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE MPD D 100' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS C 4 ? CYS A 11 . ? 1_555 ? 2 AC1 4 CYS C 7 ? CYS A 14 . ? 1_555 ? 3 AC1 4 CYS C 14 ? CYS A 21 . ? 1_555 ? 4 AC1 4 CYS C 21 ? CYS A 28 . ? 1_555 ? 5 AC2 4 CYS C 4 ? CYS A 11 . ? 1_555 ? 6 AC2 4 CYS C 21 ? CYS A 28 . ? 1_555 ? 7 AC2 4 CYS C 24 ? CYS A 31 . ? 1_555 ? 8 AC2 4 CYS C 31 ? CYS A 38 . ? 1_555 ? 9 AC3 4 CYS D 4 ? CYS B 11 . ? 1_555 ? 10 AC3 4 CYS D 7 ? CYS B 14 . ? 1_555 ? 11 AC3 4 CYS D 14 ? CYS B 21 . ? 1_555 ? 12 AC3 4 CYS D 21 ? CYS B 28 . ? 1_555 ? 13 AC4 4 CYS D 4 ? CYS B 11 . ? 1_555 ? 14 AC4 4 CYS D 21 ? CYS B 28 . ? 1_555 ? 15 AC4 4 CYS D 24 ? CYS B 31 . ? 1_555 ? 16 AC4 4 CYS D 31 ? CYS B 38 . ? 1_555 ? 17 AC5 7 LEU C 42 ? LEU A 49 . ? 1_555 ? 18 AC5 7 DA A 11 ? DA D 11 . ? 1_555 ? 19 AC5 7 DG A 12 ? DG D 12 . ? 1_555 ? 20 AC5 7 DT A 13 ? DT D 13 . ? 1_555 ? 21 AC5 7 DT B 11 ? DT E 31 . ? 1_555 ? 22 AC5 7 DG B 12 ? DG E 32 . ? 1_555 ? 23 AC5 7 DT B 13 ? DT E 33 . ? 1_555 ? # _atom_sites.entry_id 3COQ _atom_sites.fract_transf_matrix[1][1] 0.007905 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000814 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024492 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011118 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A D . n A 1 2 DC 2 2 2 DC C D . n A 1 3 DC 3 3 3 DC C D . n A 1 4 DG 4 4 4 DG G D . n A 1 5 DG 5 5 5 DG G D . n A 1 6 DA 6 6 6 DA A D . n A 1 7 DG 7 7 7 DG G D . n A 1 8 DG 8 8 8 DG G D . n A 1 9 DA 9 9 9 DA A D . n A 1 10 DC 10 10 10 DC C D . n A 1 11 DA 11 11 11 DA A D . n A 1 12 DG 12 12 12 DG G D . n A 1 13 DT 13 13 13 DT T D . n A 1 14 DC 14 14 14 DC C D . n A 1 15 DC 15 15 15 DC C D . n A 1 16 DT 16 16 16 DT T D . n A 1 17 DC 17 17 17 DC C D . n A 1 18 DC 18 18 18 DC C D . n A 1 19 DG 19 19 19 DG G D . n A 1 20 DG 20 20 20 DG G D . n B 2 1 DT 1 21 21 DT T E . n B 2 2 DC 2 22 22 DC C E . n B 2 3 DC 3 23 23 DC C E . n B 2 4 DG 4 24 24 DG G E . n B 2 5 DG 5 25 25 DG G E . n B 2 6 DA 6 26 26 DA A E . n B 2 7 DG 7 27 27 DG G E . n B 2 8 DG 8 28 28 DG G E . n B 2 9 DA 9 29 29 DA A E . n B 2 10 DC 10 30 30 DC C E . n B 2 11 DT 11 31 31 DT T E . n B 2 12 DG 12 32 32 DG G E . n B 2 13 DT 13 33 33 DT T E . n B 2 14 DC 14 34 34 DC C E . n B 2 15 DC 15 35 35 DC C E . n B 2 16 DT 16 36 36 DT T E . n B 2 17 DC 17 37 37 DC C E . n B 2 18 DC 18 38 38 DC C E . n B 2 19 DG 19 39 39 DG G E . n B 2 20 DG 20 40 40 DG G E . n C 3 1 GLU 1 8 8 GLU GLU A . n C 3 2 GLN 2 9 9 GLN GLN A . n C 3 3 ALA 3 10 10 ALA ALA A . n C 3 4 CYS 4 11 11 CYS CYS A . n C 3 5 ASP 5 12 12 ASP ASP A . n C 3 6 ILE 6 13 13 ILE ILE A . n C 3 7 CYS 7 14 14 CYS CYS A . n C 3 8 ARG 8 15 15 ARG ARG A . n C 3 9 LEU 9 16 16 LEU LEU A . n C 3 10 LYS 10 17 17 LYS LYS A . n C 3 11 LYS 11 18 18 LYS LYS A . n C 3 12 LEU 12 19 19 LEU LEU A . n C 3 13 LYS 13 20 20 LYS LYS A . n C 3 14 CYS 14 21 21 CYS CYS A . n C 3 15 SER 15 22 22 SER SER A . n C 3 16 LYS 16 23 23 LYS LYS A . n C 3 17 GLU 17 24 24 GLU GLU A . n C 3 18 LYS 18 25 25 LYS LYS A . n C 3 19 PRO 19 26 26 PRO PRO A . n C 3 20 LYS 20 27 27 LYS LYS A . n C 3 21 CYS 21 28 28 CYS CYS A . n C 3 22 ALA 22 29 29 ALA ALA A . n C 3 23 LYS 23 30 30 LYS LYS A . n C 3 24 CYS 24 31 31 CYS CYS A . n C 3 25 LEU 25 32 32 LEU LEU A . n C 3 26 LYS 26 33 33 LYS LYS A . n C 3 27 ASN 27 34 34 ASN ASN A . n C 3 28 ASN 28 35 35 ASN ASN A . n C 3 29 TRP 29 36 36 TRP TRP A . n C 3 30 GLU 30 37 37 GLU GLU A . n C 3 31 CYS 31 38 38 CYS CYS A . n C 3 32 ARG 32 39 39 ARG ARG A . n C 3 33 TYR 33 40 40 TYR TYR A . n C 3 34 SER 34 41 41 SER SER A . n C 3 35 PRO 35 42 42 PRO PRO A . n C 3 36 LYS 36 43 43 LYS LYS A . n C 3 37 THR 37 44 44 THR THR A . n C 3 38 LYS 38 45 45 LYS LYS A . n C 3 39 ARG 39 46 46 ARG ARG A . n C 3 40 SER 40 47 47 SER SER A . n C 3 41 PRO 41 48 48 PRO PRO A . n C 3 42 LEU 42 49 49 LEU LEU A . n C 3 43 THR 43 50 50 THR THR A . n C 3 44 ARG 44 51 51 ARG ARG A . n C 3 45 ALA 45 52 52 ALA ALA A . n C 3 46 HIS 46 53 53 HIS HIS A . n C 3 47 LEU 47 54 54 LEU LEU A . n C 3 48 THR 48 55 55 THR THR A . n C 3 49 GLU 49 56 56 GLU GLU A . n C 3 50 VAL 50 57 57 VAL VAL A . n C 3 51 GLU 51 58 58 GLU GLU A . n C 3 52 SER 52 59 59 SER SER A . n C 3 53 ARG 53 60 60 ARG ARG A . n C 3 54 LEU 54 61 61 LEU LEU A . n C 3 55 GLU 55 62 62 GLU GLU A . n C 3 56 ARG 56 63 63 ARG ARG A . n C 3 57 LEU 57 64 64 LEU LEU A . n C 3 58 GLU 58 65 65 GLU GLU A . n C 3 59 GLN 59 66 66 GLN GLN A . n C 3 60 LEU 60 67 67 LEU LEU A . n C 3 61 PHE 61 68 68 PHE PHE A . n C 3 62 LEU 62 69 69 LEU LEU A . n C 3 63 LEU 63 70 70 LEU LEU A . n C 3 64 ILE 64 71 71 ILE ILE A . n C 3 65 PHE 65 72 72 PHE PHE A . n C 3 66 PRO 66 73 73 PRO PRO A . n C 3 67 ARG 67 74 74 ARG ARG A . n C 3 68 GLU 68 75 75 GLU GLU A . n C 3 69 ASP 69 76 76 ASP ASP A . n C 3 70 LEU 70 77 77 LEU LEU A . n C 3 71 ASP 71 78 78 ASP ASP A . n C 3 72 MET 72 79 79 MET MET A . n C 3 73 ILE 73 80 80 ILE ILE A . n C 3 74 LEU 74 81 81 LEU LEU A . n C 3 75 LYS 75 82 82 LYS LYS A . n C 3 76 MET 76 83 83 MET MET A . n C 3 77 ASP 77 84 84 ASP ASP A . n C 3 78 SER 78 85 85 SER SER A . n C 3 79 LEU 79 86 86 LEU LEU A . n C 3 80 GLN 80 87 87 GLN GLN A . n C 3 81 ASP 81 88 88 ASP ASP A . n C 3 82 ILE 82 89 89 ILE ILE A . n C 3 83 LYS 83 90 90 LYS LYS A . n C 3 84 ALA 84 91 91 ALA ALA A . n C 3 85 LEU 85 92 92 LEU LEU A . n C 3 86 LEU 86 93 93 LEU LEU A . n C 3 87 THR 87 94 94 THR THR A . n C 3 88 GLY 88 95 95 GLY GLY A . n C 3 89 LEU 89 96 96 LEU LEU A . n D 3 1 GLU 1 8 8 GLU GLU B . n D 3 2 GLN 2 9 9 GLN GLN B . n D 3 3 ALA 3 10 10 ALA ALA B . n D 3 4 CYS 4 11 11 CYS CYS B . n D 3 5 ASP 5 12 12 ASP ASP B . n D 3 6 ILE 6 13 13 ILE ILE B . n D 3 7 CYS 7 14 14 CYS CYS B . n D 3 8 ARG 8 15 15 ARG ARG B . n D 3 9 LEU 9 16 16 LEU LEU B . n D 3 10 LYS 10 17 17 LYS LYS B . n D 3 11 LYS 11 18 18 LYS LYS B . n D 3 12 LEU 12 19 19 LEU LEU B . n D 3 13 LYS 13 20 20 LYS LYS B . n D 3 14 CYS 14 21 21 CYS CYS B . n D 3 15 SER 15 22 22 SER SER B . n D 3 16 LYS 16 23 23 LYS LYS B . n D 3 17 GLU 17 24 24 GLU GLU B . n D 3 18 LYS 18 25 25 LYS LYS B . n D 3 19 PRO 19 26 26 PRO PRO B . n D 3 20 LYS 20 27 27 LYS LYS B . n D 3 21 CYS 21 28 28 CYS CYS B . n D 3 22 ALA 22 29 29 ALA ALA B . n D 3 23 LYS 23 30 30 LYS LYS B . n D 3 24 CYS 24 31 31 CYS CYS B . n D 3 25 LEU 25 32 32 LEU LEU B . n D 3 26 LYS 26 33 33 LYS LYS B . n D 3 27 ASN 27 34 34 ASN ASN B . n D 3 28 ASN 28 35 35 ASN ASN B . n D 3 29 TRP 29 36 36 TRP TRP B . n D 3 30 GLU 30 37 37 GLU GLU B . n D 3 31 CYS 31 38 38 CYS CYS B . n D 3 32 ARG 32 39 39 ARG ARG B . n D 3 33 TYR 33 40 40 TYR TYR B . n D 3 34 SER 34 41 41 SER SER B . n D 3 35 PRO 35 42 42 PRO PRO B . n D 3 36 LYS 36 43 43 LYS LYS B . n D 3 37 THR 37 44 44 THR THR B . n D 3 38 LYS 38 45 45 LYS LYS B . n D 3 39 ARG 39 46 46 ARG ARG B . n D 3 40 SER 40 47 47 SER SER B . n D 3 41 PRO 41 48 48 PRO PRO B . n D 3 42 LEU 42 49 49 LEU LEU B . n D 3 43 THR 43 50 50 THR THR B . n D 3 44 ARG 44 51 51 ARG ARG B . n D 3 45 ALA 45 52 52 ALA ALA B . n D 3 46 HIS 46 53 53 HIS HIS B . n D 3 47 LEU 47 54 54 LEU LEU B . n D 3 48 THR 48 55 55 THR THR B . n D 3 49 GLU 49 56 56 GLU GLU B . n D 3 50 VAL 50 57 57 VAL VAL B . n D 3 51 GLU 51 58 58 GLU GLU B . n D 3 52 SER 52 59 59 SER SER B . n D 3 53 ARG 53 60 60 ARG ARG B . n D 3 54 LEU 54 61 61 LEU LEU B . n D 3 55 GLU 55 62 62 GLU GLU B . n D 3 56 ARG 56 63 63 ARG ARG B . n D 3 57 LEU 57 64 64 LEU LEU B . n D 3 58 GLU 58 65 65 GLU GLU B . n D 3 59 GLN 59 66 66 GLN GLN B . n D 3 60 LEU 60 67 67 LEU LEU B . n D 3 61 PHE 61 68 68 PHE PHE B . n D 3 62 LEU 62 69 69 LEU LEU B . n D 3 63 LEU 63 70 70 LEU LEU B . n D 3 64 ILE 64 71 71 ILE ILE B . n D 3 65 PHE 65 72 72 PHE PHE B . n D 3 66 PRO 66 73 73 PRO PRO B . n D 3 67 ARG 67 74 74 ARG ARG B . n D 3 68 GLU 68 75 75 GLU GLU B . n D 3 69 ASP 69 76 76 ASP ASP B . n D 3 70 LEU 70 77 77 LEU LEU B . n D 3 71 ASP 71 78 78 ASP ASP B . n D 3 72 MET 72 79 79 MET MET B . n D 3 73 ILE 73 80 80 ILE ILE B . n D 3 74 LEU 74 81 81 LEU LEU B . n D 3 75 LYS 75 82 82 LYS LYS B . n D 3 76 MET 76 83 83 MET MET B . n D 3 77 ASP 77 84 84 ASP ASP B . n D 3 78 SER 78 85 85 SER SER B . n D 3 79 LEU 79 86 86 LEU LEU B . n D 3 80 GLN 80 87 87 GLN GLN B . n D 3 81 ASP 81 88 88 ASP ASP B . n D 3 82 ILE 82 89 89 ILE ILE B . n D 3 83 LYS 83 90 90 LYS LYS B . n D 3 84 ALA 84 91 91 ALA ALA B . n D 3 85 LEU 85 92 92 LEU LEU B . n D 3 86 LEU 86 93 93 LEU LEU B . n D 3 87 THR 87 94 94 THR THR B . n D 3 88 GLY 88 95 95 GLY GLY B . n D 3 89 LEU 89 96 96 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 MPD 1 100 100 MPD MPD D . F 5 ZN 1 1001 1001 ZN ZN2 A . G 5 ZN 1 1002 1002 ZN ZN2 A . H 5 ZN 1 1 1 ZN ZN2 B . I 5 ZN 1 2 2 ZN ZN2 B . J 6 HOH 1 101 15 HOH HOH D . J 6 HOH 2 102 26 HOH HOH D . J 6 HOH 3 103 27 HOH HOH D . J 6 HOH 4 104 35 HOH HOH D . J 6 HOH 5 105 37 HOH HOH D . J 6 HOH 6 106 39 HOH HOH D . J 6 HOH 7 107 62 HOH HOH D . J 6 HOH 8 108 63 HOH HOH D . J 6 HOH 9 109 65 HOH HOH D . J 6 HOH 10 110 73 HOH HOH D . K 6 HOH 1 41 10 HOH HOH E . K 6 HOH 2 42 22 HOH HOH E . K 6 HOH 3 43 34 HOH HOH E . K 6 HOH 4 44 48 HOH HOH E . K 6 HOH 5 45 51 HOH HOH E . K 6 HOH 6 46 56 HOH HOH E . K 6 HOH 7 47 60 HOH HOH E . K 6 HOH 8 48 61 HOH HOH E . K 6 HOH 9 49 64 HOH HOH E . K 6 HOH 10 50 71 HOH HOH E . L 6 HOH 1 1003 18 HOH HOH A . L 6 HOH 2 1004 19 HOH HOH A . L 6 HOH 3 1005 32 HOH HOH A . L 6 HOH 4 1006 36 HOH HOH A . M 6 HOH 1 97 14 HOH HOH B . M 6 HOH 2 98 25 HOH HOH B . M 6 HOH 3 99 33 HOH HOH B . M 6 HOH 4 100 38 HOH HOH B . M 6 HOH 5 101 46 HOH HOH B . M 6 HOH 6 102 55 HOH HOH B . M 6 HOH 7 103 57 HOH HOH B . M 6 HOH 8 104 74 HOH HOH B . M 6 HOH 9 105 75 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8210 ? 1 MORE -70.8 ? 1 'SSA (A^2)' 17740 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? C CYS 4 ? A CYS 11 ? 1_555 ZN ? G ZN . ? A ZN 1002 ? 1_555 SG ? C CYS 21 ? A CYS 28 ? 1_555 99.9 ? 2 SG ? C CYS 4 ? A CYS 11 ? 1_555 ZN ? G ZN . ? A ZN 1002 ? 1_555 SG ? C CYS 24 ? A CYS 31 ? 1_555 93.0 ? 3 SG ? C CYS 21 ? A CYS 28 ? 1_555 ZN ? G ZN . ? A ZN 1002 ? 1_555 SG ? C CYS 24 ? A CYS 31 ? 1_555 121.3 ? 4 SG ? C CYS 4 ? A CYS 11 ? 1_555 ZN ? G ZN . ? A ZN 1002 ? 1_555 SG ? C CYS 31 ? A CYS 38 ? 1_555 134.1 ? 5 SG ? C CYS 21 ? A CYS 28 ? 1_555 ZN ? G ZN . ? A ZN 1002 ? 1_555 SG ? C CYS 31 ? A CYS 38 ? 1_555 101.5 ? 6 SG ? C CYS 24 ? A CYS 31 ? 1_555 ZN ? G ZN . ? A ZN 1002 ? 1_555 SG ? C CYS 31 ? A CYS 38 ? 1_555 109.3 ? 7 SG ? C CYS 4 ? A CYS 11 ? 1_555 ZN ? F ZN . ? A ZN 1001 ? 1_555 SG ? C CYS 7 ? A CYS 14 ? 1_555 89.0 ? 8 SG ? C CYS 4 ? A CYS 11 ? 1_555 ZN ? F ZN . ? A ZN 1001 ? 1_555 SG ? C CYS 21 ? A CYS 28 ? 1_555 97.0 ? 9 SG ? C CYS 7 ? A CYS 14 ? 1_555 ZN ? F ZN . ? A ZN 1001 ? 1_555 SG ? C CYS 21 ? A CYS 28 ? 1_555 123.6 ? 10 SG ? D CYS 4 ? B CYS 11 ? 1_555 ZN ? H ZN . ? B ZN 1 ? 1_555 SG ? D CYS 7 ? B CYS 14 ? 1_555 88.2 ? 11 SG ? D CYS 4 ? B CYS 11 ? 1_555 ZN ? H ZN . ? B ZN 1 ? 1_555 SG ? D CYS 14 ? B CYS 21 ? 1_555 129.3 ? 12 SG ? D CYS 7 ? B CYS 14 ? 1_555 ZN ? H ZN . ? B ZN 1 ? 1_555 SG ? D CYS 14 ? B CYS 21 ? 1_555 104.3 ? 13 SG ? D CYS 4 ? B CYS 11 ? 1_555 ZN ? H ZN . ? B ZN 1 ? 1_555 SG ? D CYS 21 ? B CYS 28 ? 1_555 104.4 ? 14 SG ? D CYS 7 ? B CYS 14 ? 1_555 ZN ? H ZN . ? B ZN 1 ? 1_555 SG ? D CYS 21 ? B CYS 28 ? 1_555 128.7 ? 15 SG ? D CYS 14 ? B CYS 21 ? 1_555 ZN ? H ZN . ? B ZN 1 ? 1_555 SG ? D CYS 21 ? B CYS 28 ? 1_555 104.8 ? 16 SG ? D CYS 4 ? B CYS 11 ? 1_555 ZN ? I ZN . ? B ZN 2 ? 1_555 SG ? D CYS 21 ? B CYS 28 ? 1_555 98.3 ? 17 SG ? D CYS 4 ? B CYS 11 ? 1_555 ZN ? I ZN . ? B ZN 2 ? 1_555 SG ? D CYS 24 ? B CYS 31 ? 1_555 102.1 ? 18 SG ? D CYS 21 ? B CYS 28 ? 1_555 ZN ? I ZN . ? B ZN 2 ? 1_555 SG ? D CYS 24 ? B CYS 31 ? 1_555 137.6 ? 19 SG ? D CYS 4 ? B CYS 11 ? 1_555 ZN ? I ZN . ? B ZN 2 ? 1_555 SG ? D CYS 31 ? B CYS 38 ? 1_555 112.6 ? 20 SG ? D CYS 21 ? B CYS 28 ? 1_555 ZN ? I ZN . ? B ZN 2 ? 1_555 SG ? D CYS 31 ? B CYS 38 ? 1_555 82.3 ? 21 SG ? D CYS 24 ? B CYS 31 ? 1_555 ZN ? I ZN . ? B ZN 2 ? 1_555 SG ? D CYS 31 ? B CYS 38 ? 1_555 121.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 4 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' diffrn 3 4 'Structure model' diffrn_radiation_wavelength 4 4 'Structure model' diffrn_source 5 4 'Structure model' entity_src_gen 6 4 'Structure model' ndb_struct_na_base_pair 7 4 'Structure model' pdbx_entity_src_syn 8 4 'Structure model' software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.pdbx_wavelength_list' 2 4 'Structure model' '_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id' 3 4 'Structure model' '_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id' 4 4 'Structure model' '_ndb_struct_na_base_pair.buckle' 5 4 'Structure model' '_ndb_struct_na_base_pair.opening' 6 4 'Structure model' '_software.classification' 7 4 'Structure model' '_software.contact_author' 8 4 'Structure model' '_software.contact_author_email' 9 4 'Structure model' '_software.language' 10 4 'Structure model' '_software.location' 11 4 'Structure model' '_software.name' 12 4 'Structure model' '_software.type' 13 4 'Structure model' '_software.version' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 26.5547 11.4820 119.8274 0.0046 -0.4023 0.0886 -0.0180 -0.0243 0.0119 3.9151 0.8944 3.6602 -1.2409 -1.6391 -0.1813 0.0084 -0.3943 0.3859 0.3831 -0.4762 -0.1464 0.3413 0.2909 -0.2695 'X-RAY DIFFRACTION' 2 ? refined 9.4315 29.8245 119.8894 0.0099 -0.2720 0.0252 0.0420 0.0188 -0.0388 2.6633 1.8362 4.1381 -1.1300 1.5699 -1.1633 0.0139 -0.4559 0.4420 0.2503 0.4275 0.0800 0.3904 -0.3453 -0.0135 'X-RAY DIFFRACTION' 3 ? refined 19.8690 21.5164 100.9090 -0.1607 0.2817 -0.2349 0.2189 -0.0140 0.1032 8.3470 2.9700 0.9413 -2.9739 -0.1201 0.1623 0.2689 -0.4235 0.1545 1.2570 0.1994 -0.1165 -0.0638 0.0590 0.1143 'X-RAY DIFFRACTION' 4 ? refined 16.1531 22.3954 100.8826 -0.1676 0.2945 -0.2529 0.1864 0.0311 0.0468 6.9143 3.3132 0.8488 -3.2903 0.8884 0.1924 0.2675 -0.3682 0.1008 1.1153 0.1416 0.0524 -0.1083 0.0235 0.0211 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 8 A 96 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 8 B 96 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 D 1 D 20 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 E 21 E 40 ? . . . . ? # loop_ _phasing.method MAD MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 3 SOLVE . ? package 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 5 PDB_EXTRACT 3.005 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 7 CNS . ? ? ? ? phasing ? ? ? 8 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O2 _pdbx_validate_close_contact.auth_asym_id_1 D _pdbx_validate_close_contact.auth_comp_id_1 DC _pdbx_validate_close_contact.auth_seq_id_1 14 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 D _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 106 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 62 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 LEU _pdbx_validate_symm_contact.auth_seq_id_2 69 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_558 _pdbx_validate_symm_contact.dist 2.04 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N9 D DA 1 ? ? C4 D DA 1 ? ? 1.333 1.374 -0.041 0.006 N 2 1 C6 D DG 7 ? ? O6 D DG 7 ? ? 1.336 1.237 0.099 0.009 N 3 1 C5 D DG 8 ? ? N7 D DG 8 ? ? 1.431 1.388 0.043 0.006 N 4 1 "O3'" D DC 10 ? ? "C3'" D DC 10 ? ? 1.355 1.419 -0.064 0.006 N 5 1 C6 D DA 11 ? ? N1 D DA 11 ? ? 1.411 1.351 0.060 0.007 N 6 1 "O3'" D DA 11 ? ? P D DG 12 ? ? 1.525 1.607 -0.082 0.012 Y 7 1 C2 D DG 12 ? ? N2 D DG 12 ? ? 1.404 1.341 0.063 0.010 N 8 1 C6 D DG 12 ? ? O6 D DG 12 ? ? 1.306 1.237 0.069 0.009 N 9 1 "C1'" D DT 13 ? ? N1 D DT 13 ? ? 1.605 1.488 0.117 0.013 N 10 1 "C5'" D DC 14 ? ? "C4'" D DC 14 ? ? 1.560 1.512 0.048 0.007 N 11 1 "O4'" D DC 14 ? ? "C4'" D DC 14 ? ? 1.520 1.449 0.071 0.009 N 12 1 C4 D DT 16 ? ? C5 D DT 16 ? ? 1.508 1.445 0.063 0.009 N 13 1 N3 D DC 17 ? ? C4 D DC 17 ? ? 1.387 1.335 0.052 0.007 N 14 1 "O3'" E DC 23 ? ? "C3'" E DC 23 ? ? 1.369 1.419 -0.050 0.006 N 15 1 "O3'" E DG 25 ? ? "C3'" E DG 25 ? ? 1.351 1.419 -0.068 0.006 N 16 1 "O3'" E DG 27 ? ? "C3'" E DG 27 ? ? 1.379 1.419 -0.040 0.006 N 17 1 "O3'" E DG 28 ? ? "C3'" E DG 28 ? ? 1.346 1.419 -0.073 0.006 N 18 1 N3 E DA 29 ? ? C4 E DA 29 ? ? 1.291 1.344 -0.053 0.006 N 19 1 "O3'" E DC 30 ? ? "C3'" E DC 30 ? ? 1.377 1.419 -0.042 0.006 N 20 1 "O3'" E DT 31 ? ? "C3'" E DT 31 ? ? 1.371 1.419 -0.048 0.006 N 21 1 C2 E DT 31 ? ? O2 E DT 31 ? ? 1.161 1.220 -0.059 0.008 N 22 1 C5 E DT 31 ? ? C7 E DT 31 ? ? 1.544 1.496 0.048 0.006 N 23 1 C6 E DG 32 ? ? O6 E DG 32 ? ? 1.307 1.237 0.070 0.009 N 24 1 "O4'" E DC 34 ? ? "C1'" E DC 34 ? ? 1.326 1.418 -0.092 0.012 N 25 1 "O3'" E DG 39 ? ? "C3'" E DG 39 ? ? 1.551 1.435 0.116 0.013 N 26 1 CB A CYS 31 ? ? SG A CYS 31 ? ? 1.994 1.818 0.176 0.017 N 27 1 CD A GLU 56 ? ? OE1 A GLU 56 ? ? 1.325 1.252 0.073 0.011 N 28 1 CG A GLU 58 ? ? CD A GLU 58 ? ? 1.613 1.515 0.098 0.015 N 29 1 CG A GLU 62 ? ? CD A GLU 62 ? ? 1.634 1.515 0.119 0.015 N 30 1 CB B CYS 31 ? ? SG B CYS 31 ? ? 2.047 1.818 0.229 0.017 N 31 1 CG B ARG 46 ? ? CD B ARG 46 ? ? 1.678 1.515 0.163 0.025 N 32 1 CG B GLU 56 ? ? CD B GLU 56 ? ? 1.608 1.515 0.093 0.015 N 33 1 CB B SER 59 ? ? OG B SER 59 ? ? 1.325 1.418 -0.093 0.013 N 34 1 CE1 B PHE 68 ? ? CZ B PHE 68 ? ? 1.485 1.369 0.116 0.019 N 35 1 CB B PHE 72 ? ? CG B PHE 72 ? ? 1.393 1.509 -0.116 0.017 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" D DA 1 ? ? "C1'" D DA 1 ? ? N9 D DA 1 ? ? 99.16 108.00 -8.84 0.70 N 2 1 C2 D DA 1 ? ? N3 D DA 1 ? ? C4 D DA 1 ? ? 104.24 110.60 -6.36 0.50 N 3 1 C5 D DA 1 ? ? C6 D DA 1 ? ? N1 D DA 1 ? ? 112.56 117.70 -5.14 0.50 N 4 1 "O5'" D DC 2 ? ? P D DC 2 ? ? OP1 D DC 2 ? ? 99.96 105.70 -5.74 0.90 N 5 1 "O5'" D DC 2 ? ? "C5'" D DC 2 ? ? "C4'" D DC 2 ? ? 101.23 109.40 -8.17 0.80 N 6 1 N1 D DC 2 ? ? "C1'" D DC 2 ? ? "C2'" D DC 2 ? ? 123.13 114.30 8.83 1.40 N 7 1 "O5'" D DC 3 ? ? "C5'" D DC 3 ? ? "C4'" D DC 3 ? ? 104.45 109.40 -4.95 0.80 N 8 1 C6 D DC 3 ? ? N1 D DC 3 ? ? C2 D DC 3 ? ? 116.97 120.30 -3.33 0.40 N 9 1 N3 D DC 3 ? ? C4 D DC 3 ? ? N4 D DC 3 ? ? 122.23 118.00 4.23 0.70 N 10 1 N1 D DG 4 ? ? C2 D DG 4 ? ? N3 D DG 4 ? ? 128.52 123.90 4.62 0.60 N 11 1 "C3'" D DG 4 ? ? "O3'" D DG 4 ? ? P D DG 5 ? ? 129.06 119.70 9.36 1.20 Y 12 1 "O3'" D DG 4 ? ? P D DG 5 ? ? "O5'" D DG 5 ? ? 117.74 104.00 13.74 1.90 Y 13 1 "C3'" D DG 5 ? ? "C2'" D DG 5 ? ? "C1'" D DG 5 ? ? 95.09 102.40 -7.31 0.80 N 14 1 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 111.27 108.30 2.97 0.30 N 15 1 C4 D DG 5 ? ? C5 D DG 5 ? ? N7 D DG 5 ? ? 107.75 110.80 -3.05 0.40 N 16 1 "O4'" D DA 6 ? ? "C1'" D DA 6 ? ? N9 D DA 6 ? ? 102.12 108.00 -5.88 0.70 N 17 1 "O5'" D DG 7 ? ? P D DG 7 ? ? OP2 D DG 7 ? ? 97.87 105.70 -7.83 0.90 N 18 1 C4 D DG 7 ? ? C5 D DG 7 ? ? C6 D DG 7 ? ? 122.78 118.80 3.98 0.60 N 19 1 C5 D DG 7 ? ? C6 D DG 7 ? ? N1 D DG 7 ? ? 107.38 111.50 -4.12 0.50 N 20 1 C6 D DG 7 ? ? C5 D DG 7 ? ? N7 D DG 7 ? ? 125.93 130.40 -4.47 0.60 N 21 1 N1 D DG 7 ? ? C6 D DG 7 ? ? O6 D DG 7 ? ? 126.67 119.90 6.77 0.60 N 22 1 "O5'" D DG 8 ? ? "C5'" D DG 8 ? ? "C4'" D DG 8 ? ? 101.92 109.40 -7.48 0.80 N 23 1 C5 D DG 8 ? ? C6 D DG 8 ? ? N1 D DG 8 ? ? 114.88 111.50 3.38 0.50 N 24 1 "O5'" D DA 9 ? ? P D DA 9 ? ? OP1 D DA 9 ? ? 97.86 105.70 -7.84 0.90 N 25 1 "C3'" D DA 9 ? ? "C2'" D DA 9 ? ? "C1'" D DA 9 ? ? 97.50 102.40 -4.90 0.80 N 26 1 N3 D DC 10 ? ? C2 D DC 10 ? ? O2 D DC 10 ? ? 116.98 121.90 -4.92 0.70 N 27 1 OP1 D DA 11 ? ? P D DA 11 ? ? OP2 D DA 11 ? ? 131.28 119.60 11.68 1.50 N 28 1 "O5'" D DA 11 ? ? P D DA 11 ? ? OP2 D DA 11 ? ? 96.64 105.70 -9.06 0.90 N 29 1 "O4'" D DA 11 ? ? "C1'" D DA 11 ? ? N9 D DA 11 ? ? 110.48 108.30 2.18 0.30 N 30 1 C6 D DA 11 ? ? N1 D DA 11 ? ? C2 D DA 11 ? ? 114.07 118.60 -4.53 0.60 N 31 1 C5 D DA 11 ? ? N7 D DA 11 ? ? C8 D DA 11 ? ? 99.44 103.90 -4.46 0.50 N 32 1 N7 D DA 11 ? ? C8 D DA 11 ? ? N9 D DA 11 ? ? 117.68 113.80 3.88 0.50 N 33 1 C5 D DA 11 ? ? C6 D DA 11 ? ? N6 D DA 11 ? ? 118.25 123.70 -5.45 0.80 N 34 1 "O4'" D DG 12 ? ? "C1'" D DG 12 ? ? "C2'" D DG 12 ? ? 99.34 105.90 -6.56 0.80 N 35 1 N1 D DG 12 ? ? C2 D DG 12 ? ? N2 D DG 12 ? ? 122.17 116.20 5.97 0.90 N 36 1 "C3'" D DG 12 ? ? "O3'" D DG 12 ? ? P D DT 13 ? ? 130.58 119.70 10.88 1.20 Y 37 1 "O3'" D DG 12 ? ? P D DT 13 ? ? OP2 D DT 13 ? ? 117.16 110.50 6.66 1.10 Y 38 1 "O4'" D DT 13 ? ? "C1'" D DT 13 ? ? "C2'" D DT 13 ? ? 100.74 105.90 -5.16 0.80 N 39 1 "O4'" D DT 13 ? ? "C1'" D DT 13 ? ? N1 D DT 13 ? ? 95.69 108.00 -12.31 0.70 N 40 1 C2 D DT 13 ? ? N3 D DT 13 ? ? C4 D DT 13 ? ? 132.18 127.20 4.98 0.60 N 41 1 N3 D DT 13 ? ? C4 D DT 13 ? ? C5 D DT 13 ? ? 111.59 115.20 -3.61 0.60 N 42 1 N3 D DT 13 ? ? C4 D DT 13 ? ? O4 D DT 13 ? ? 126.11 119.90 6.21 0.60 N 43 1 "C5'" D DC 14 ? ? "C4'" D DC 14 ? ? "O4'" D DC 14 ? ? 116.51 109.80 6.71 1.10 N 44 1 "O4'" D DC 14 ? ? "C1'" D DC 14 ? ? "C2'" D DC 14 ? ? 110.12 106.80 3.32 0.50 N 45 1 "O4'" D DC 14 ? ? "C1'" D DC 14 ? ? N1 D DC 14 ? ? 111.90 108.30 3.60 0.30 N 46 1 N3 D DC 14 ? ? C4 D DC 14 ? ? C5 D DC 14 ? ? 124.59 121.90 2.69 0.40 N 47 1 C4 D DC 14 ? ? C5 D DC 14 ? ? C6 D DC 14 ? ? 114.28 117.40 -3.12 0.50 N 48 1 "O4'" D DC 15 ? ? "C1'" D DC 15 ? ? N1 D DC 15 ? ? 111.78 108.30 3.48 0.30 N 49 1 "O3'" D DC 15 ? ? P D DT 16 ? ? OP2 D DT 16 ? ? 117.26 110.50 6.76 1.10 Y 50 1 "O5'" D DT 16 ? ? "C5'" D DT 16 ? ? "C4'" D DT 16 ? ? 104.28 109.40 -5.12 0.80 N 51 1 N1 D DT 16 ? ? C2 D DT 16 ? ? N3 D DT 16 ? ? 118.28 114.60 3.68 0.60 N 52 1 N1 D DT 16 ? ? C2 D DT 16 ? ? O2 D DT 16 ? ? 127.94 123.10 4.84 0.80 N 53 1 N3 D DT 16 ? ? C2 D DT 16 ? ? O2 D DT 16 ? ? 113.78 122.30 -8.52 0.60 N 54 1 N3 D DT 16 ? ? C4 D DT 16 ? ? O4 D DT 16 ? ? 114.65 119.90 -5.25 0.60 N 55 1 C5 D DT 16 ? ? C4 D DT 16 ? ? O4 D DT 16 ? ? 129.13 124.90 4.23 0.70 N 56 1 C4 D DT 16 ? ? C5 D DT 16 ? ? C7 D DT 16 ? ? 124.40 119.00 5.40 0.60 N 57 1 C6 D DT 16 ? ? C5 D DT 16 ? ? C7 D DT 16 ? ? 117.91 122.90 -4.99 0.60 N 58 1 "C3'" D DC 17 ? ? "C2'" D DC 17 ? ? "C1'" D DC 17 ? ? 96.34 102.40 -6.06 0.80 N 59 1 "O4'" D DC 17 ? ? "C1'" D DC 17 ? ? N1 D DC 17 ? ? 102.52 108.00 -5.48 0.70 N 60 1 C6 D DC 17 ? ? N1 D DC 17 ? ? C2 D DC 17 ? ? 123.38 120.30 3.08 0.40 N 61 1 N1 D DC 17 ? ? C2 D DC 17 ? ? O2 D DC 17 ? ? 115.12 118.90 -3.78 0.60 N 62 1 N3 D DC 17 ? ? C2 D DC 17 ? ? O2 D DC 17 ? ? 128.40 121.90 6.50 0.70 N 63 1 "C5'" E DC 23 ? ? "C4'" E DC 23 ? ? "O4'" E DC 23 ? ? 120.43 109.80 10.63 1.10 N 64 1 "O4'" E DC 23 ? ? "C1'" E DC 23 ? ? "C2'" E DC 23 ? ? 100.99 105.90 -4.91 0.80 N 65 1 "O4'" E DC 23 ? ? "C1'" E DC 23 ? ? N1 E DC 23 ? ? 113.61 108.30 5.31 0.30 N 66 1 C6 E DC 23 ? ? N1 E DC 23 ? ? C2 E DC 23 ? ? 117.06 120.30 -3.24 0.40 N 67 1 "C3'" E DC 23 ? ? "O3'" E DC 23 ? ? P E DG 24 ? ? 111.82 119.70 -7.88 1.20 Y 68 1 "C1'" E DG 25 ? ? "O4'" E DG 25 ? ? "C4'" E DG 25 ? ? 103.06 110.10 -7.04 1.00 N 69 1 "C3'" E DG 25 ? ? "C2'" E DG 25 ? ? "C1'" E DG 25 ? ? 94.29 102.40 -8.11 0.80 N 70 1 "O4'" E DG 25 ? ? "C1'" E DG 25 ? ? N9 E DG 25 ? ? 112.12 108.30 3.82 0.30 N 71 1 N1 E DG 25 ? ? C2 E DG 25 ? ? N2 E DG 25 ? ? 110.40 116.20 -5.80 0.90 N 72 1 N3 E DG 25 ? ? C2 E DG 25 ? ? N2 E DG 25 ? ? 124.15 119.90 4.25 0.70 N 73 1 N1 E DG 25 ? ? C6 E DG 25 ? ? O6 E DG 25 ? ? 114.47 119.90 -5.43 0.60 N 74 1 "O5'" E DA 26 ? ? P E DA 26 ? ? OP2 E DA 26 ? ? 98.18 105.70 -7.52 0.90 N 75 1 "O4'" E DA 26 ? ? "C1'" E DA 26 ? ? "C2'" E DA 26 ? ? 110.48 106.80 3.68 0.50 N 76 1 "O4'" E DA 26 ? ? "C1'" E DA 26 ? ? N9 E DA 26 ? ? 102.82 108.00 -5.18 0.70 N 77 1 N3 E DG 27 ? ? C4 E DG 27 ? ? C5 E DG 27 ? ? 125.57 128.60 -3.03 0.50 N 78 1 C8 E DG 27 ? ? N9 E DG 27 ? ? C4 E DG 27 ? ? 102.92 106.40 -3.48 0.40 N 79 1 "O5'" E DG 28 ? ? "C5'" E DG 28 ? ? "C4'" E DG 28 ? ? 102.39 109.40 -7.01 0.80 N 80 1 P E DA 29 ? ? "O5'" E DA 29 ? ? "C5'" E DA 29 ? ? 110.49 120.90 -10.41 1.60 N 81 1 N1 E DA 29 ? ? C2 E DA 29 ? ? N3 E DA 29 ? ? 133.85 129.30 4.55 0.50 N 82 1 C2 E DA 29 ? ? N3 E DA 29 ? ? C4 E DA 29 ? ? 107.56 110.60 -3.04 0.50 N 83 1 N9 E DA 29 ? ? C4 E DA 29 ? ? C5 E DA 29 ? ? 109.02 105.80 3.22 0.40 N 84 1 N3 E DA 29 ? ? C4 E DA 29 ? ? N9 E DA 29 ? ? 122.44 127.40 -4.96 0.80 N 85 1 N1 E DA 29 ? ? C6 E DA 29 ? ? N6 E DA 29 ? ? 114.83 118.60 -3.77 0.60 N 86 1 C5 E DA 29 ? ? C6 E DA 29 ? ? N6 E DA 29 ? ? 130.14 123.70 6.44 0.80 N 87 1 "O3'" E DA 29 ? ? P E DC 30 ? ? OP2 E DC 30 ? ? 118.35 110.50 7.85 1.10 Y 88 1 "O3'" E DC 30 ? ? P E DT 31 ? ? "O5'" E DT 31 ? ? 91.69 104.00 -12.31 1.90 Y 89 1 "O3'" E DC 30 ? ? P E DT 31 ? ? OP2 E DT 31 ? ? 119.62 110.50 9.12 1.10 Y 90 1 N1 E DT 31 ? ? C2 E DT 31 ? ? N3 E DT 31 ? ? 121.13 114.60 6.53 0.60 N 91 1 C2 E DT 31 ? ? N3 E DT 31 ? ? C4 E DT 31 ? ? 122.35 127.20 -4.85 0.60 N 92 1 N1 E DT 31 ? ? C2 E DT 31 ? ? O2 E DT 31 ? ? 131.87 123.10 8.77 0.80 N 93 1 N3 E DT 31 ? ? C2 E DT 31 ? ? O2 E DT 31 ? ? 107.00 122.30 -15.30 0.60 N 94 1 N3 E DT 31 ? ? C4 E DT 31 ? ? O4 E DT 31 ? ? 110.67 119.90 -9.23 0.60 N 95 1 C5 E DT 31 ? ? C4 E DT 31 ? ? O4 E DT 31 ? ? 130.88 124.90 5.98 0.70 N 96 1 "O5'" E DG 32 ? ? P E DG 32 ? ? OP2 E DG 32 ? ? 98.82 105.70 -6.88 0.90 N 97 1 "O4'" E DG 32 ? ? "C1'" E DG 32 ? ? "C2'" E DG 32 ? ? 100.90 105.90 -5.00 0.80 N 98 1 C4 E DG 32 ? ? C5 E DG 32 ? ? N7 E DG 32 ? ? 106.24 110.80 -4.56 0.40 N 99 1 C5 E DG 32 ? ? N7 E DG 32 ? ? C8 E DG 32 ? ? 109.92 104.30 5.62 0.50 N 100 1 N7 E DG 32 ? ? C8 E DG 32 ? ? N9 E DG 32 ? ? 108.09 113.10 -5.01 0.50 N 101 1 N9 E DG 32 ? ? C4 E DG 32 ? ? C5 E DG 32 ? ? 108.59 105.40 3.19 0.40 N 102 1 N3 E DG 32 ? ? C4 E DG 32 ? ? N9 E DG 32 ? ? 122.32 126.00 -3.68 0.60 N 103 1 C6 E DG 32 ? ? C5 E DG 32 ? ? N7 E DG 32 ? ? 134.54 130.40 4.14 0.60 N 104 1 "C3'" E DG 32 ? ? "O3'" E DG 32 ? ? P E DT 33 ? ? 133.11 119.70 13.41 1.20 Y 105 1 "O3'" E DG 32 ? ? P E DT 33 ? ? OP2 E DT 33 ? ? 118.70 110.50 8.20 1.10 Y 106 1 OP1 E DT 33 ? ? P E DT 33 ? ? OP2 E DT 33 ? ? 109.37 119.60 -10.23 1.50 N 107 1 "O4'" E DT 33 ? ? "C1'" E DT 33 ? ? N1 E DT 33 ? ? 98.60 108.00 -9.40 0.70 N 108 1 C4 E DT 33 ? ? C5 E DT 33 ? ? C7 E DT 33 ? ? 122.87 119.00 3.87 0.60 N 109 1 "C3'" E DC 34 ? ? "C2'" E DC 34 ? ? "C1'" E DC 34 ? ? 96.61 102.40 -5.79 0.80 N 110 1 C6 E DC 34 ? ? N1 E DC 34 ? ? C2 E DC 34 ? ? 123.41 120.30 3.11 0.40 N 111 1 C2 E DC 34 ? ? N3 E DC 34 ? ? C4 E DC 34 ? ? 114.98 119.90 -4.92 0.50 N 112 1 N3 E DC 34 ? ? C4 E DC 34 ? ? C5 E DC 34 ? ? 125.34 121.90 3.44 0.40 N 113 1 C5 E DC 34 ? ? C6 E DC 34 ? ? N1 E DC 34 ? ? 117.40 121.00 -3.60 0.50 N 114 1 N1 E DC 34 ? ? C2 E DC 34 ? ? O2 E DC 34 ? ? 113.04 118.90 -5.86 0.60 N 115 1 N3 E DC 34 ? ? C2 E DC 34 ? ? O2 E DC 34 ? ? 126.35 121.90 4.45 0.70 N 116 1 C5 E DC 34 ? ? C4 E DC 34 ? ? N4 E DC 34 ? ? 115.57 120.20 -4.63 0.70 N 117 1 C2 E DC 34 ? ? N1 E DC 34 ? ? "C1'" E DC 34 ? ? 112.12 118.80 -6.68 1.10 N 118 1 "O5'" E DT 36 ? ? "C5'" E DT 36 ? ? "C4'" E DT 36 ? ? 102.64 109.40 -6.76 0.80 N 119 1 "O4'" E DT 36 ? ? "C1'" E DT 36 ? ? N1 E DT 36 ? ? 111.07 108.30 2.77 0.30 N 120 1 N1 E DT 36 ? ? C2 E DT 36 ? ? N3 E DT 36 ? ? 119.11 114.60 4.51 0.60 N 121 1 N3 E DT 36 ? ? C2 E DT 36 ? ? O2 E DT 36 ? ? 117.82 122.30 -4.48 0.60 N 122 1 "C3'" E DC 37 ? ? "C2'" E DC 37 ? ? "C1'" E DC 37 ? ? 93.81 102.40 -8.59 0.80 N 123 1 N1 E DC 37 ? ? "C1'" E DC 37 ? ? "C2'" E DC 37 ? ? 123.76 114.30 9.46 1.40 N 124 1 "O4'" E DC 37 ? ? "C1'" E DC 37 ? ? N1 E DC 37 ? ? 98.71 108.00 -9.29 0.70 N 125 1 N3 E DC 37 ? ? C4 E DC 37 ? ? C5 E DC 37 ? ? 118.25 121.90 -3.65 0.40 N 126 1 C4 E DC 37 ? ? C5 E DC 37 ? ? C6 E DC 37 ? ? 121.39 117.40 3.99 0.50 N 127 1 N1 E DC 37 ? ? C2 E DC 37 ? ? O2 E DC 37 ? ? 114.27 118.90 -4.63 0.60 N 128 1 "O5'" E DC 38 ? ? "C5'" E DC 38 ? ? "C4'" E DC 38 ? ? 103.76 109.40 -5.64 0.80 N 129 1 "O4'" E DC 38 ? ? "C1'" E DC 38 ? ? "C2'" E DC 38 ? ? 109.82 106.80 3.02 0.50 N 130 1 "O4'" E DC 38 ? ? "C1'" E DC 38 ? ? N1 E DC 38 ? ? 102.37 108.00 -5.63 0.70 N 131 1 C2 E DC 38 ? ? N3 E DC 38 ? ? C4 E DC 38 ? ? 116.26 119.90 -3.64 0.50 N 132 1 N1 E DC 38 ? ? C2 E DC 38 ? ? O2 E DC 38 ? ? 113.48 118.90 -5.42 0.60 N 133 1 N1 E DG 39 ? ? C2 E DG 39 ? ? N2 E DG 39 ? ? 110.27 116.20 -5.93 0.90 N 134 1 N1 E DG 39 ? ? C6 E DG 39 ? ? O6 E DG 39 ? ? 115.81 119.90 -4.09 0.60 N 135 1 C5 E DG 39 ? ? C6 E DG 39 ? ? O6 E DG 39 ? ? 133.02 128.60 4.42 0.60 N 136 1 "C3'" E DG 39 ? ? "O3'" E DG 39 ? ? P E DG 40 ? ? 131.69 119.70 11.99 1.20 Y 137 1 "O4'" E DG 40 ? ? "C1'" E DG 40 ? ? "C2'" E DG 40 ? ? 110.02 106.80 3.22 0.50 N 138 1 "O4'" E DG 40 ? ? "C1'" E DG 40 ? ? N9 E DG 40 ? ? 112.94 108.30 4.64 0.30 N 139 1 N1 E DG 40 ? ? C6 E DG 40 ? ? O6 E DG 40 ? ? 123.96 119.90 4.06 0.60 N 140 1 C5 E DG 40 ? ? C6 E DG 40 ? ? O6 E DG 40 ? ? 124.57 128.60 -4.03 0.60 N 141 1 CB A ASP 12 ? ? CG A ASP 12 ? ? OD1 A ASP 12 ? ? 123.99 118.30 5.69 0.90 N 142 1 CB A LEU 16 ? ? CG A LEU 16 ? ? CD2 A LEU 16 ? ? 98.70 111.00 -12.30 1.70 N 143 1 CA A CYS 31 ? ? CB A CYS 31 ? ? SG A CYS 31 ? ? 124.37 114.20 10.17 1.10 N 144 1 CB A LEU 54 ? ? CG A LEU 54 ? ? CD2 A LEU 54 ? ? 122.58 111.00 11.58 1.70 N 145 1 OE1 A GLU 58 ? ? CD A GLU 58 ? ? OE2 A GLU 58 ? ? 114.73 123.30 -8.57 1.20 N 146 1 NE A ARG 63 ? ? CZ A ARG 63 ? ? NH1 A ARG 63 ? ? 116.34 120.30 -3.96 0.50 N 147 1 CB A ASP 88 ? ? CG A ASP 88 ? ? OD2 A ASP 88 ? ? 111.02 118.30 -7.28 0.90 N 148 1 NE B ARG 15 ? ? CZ B ARG 15 ? ? NH1 B ARG 15 ? ? 123.99 120.30 3.69 0.50 N 149 1 CA B CYS 31 ? ? CB B CYS 31 ? ? SG B CYS 31 ? ? 123.13 114.20 8.93 1.10 N 150 1 NE B ARG 51 ? ? CZ B ARG 51 ? ? NH1 B ARG 51 ? ? 124.67 120.30 4.37 0.50 N 151 1 NE B ARG 51 ? ? CZ B ARG 51 ? ? NH2 B ARG 51 ? ? 113.95 120.30 -6.35 0.50 N 152 1 CB B LEU 54 ? ? CG B LEU 54 ? ? CD2 B LEU 54 ? ? 121.28 111.00 10.28 1.70 N 153 1 NE B ARG 60 ? ? CZ B ARG 60 ? ? NH2 B ARG 60 ? ? 117.11 120.30 -3.19 0.50 N 154 1 CB B LEU 67 ? ? CG B LEU 67 ? ? CD2 B LEU 67 ? ? 122.21 111.00 11.21 1.70 N 155 1 CB B ASP 76 ? ? CG B ASP 76 ? ? OD1 B ASP 76 ? ? 109.75 118.30 -8.55 0.90 N 156 1 CB B ASP 76 ? ? CG B ASP 76 ? ? OD2 B ASP 76 ? ? 126.75 118.30 8.45 0.90 N 157 1 CB B LEU 77 ? ? CG B LEU 77 ? ? CD1 B LEU 77 ? ? 98.73 111.00 -12.27 1.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 23 ? ? 81.11 -5.18 2 1 ALA A 29 ? ? -3.37 -104.08 3 1 LYS A 33 ? ? -50.14 -81.11 4 1 ASN A 34 ? ? -64.01 16.54 5 1 TYR A 40 ? ? -100.18 76.13 6 1 LYS A 43 ? ? -57.71 106.14 7 1 GLU A 75 ? ? 42.22 177.29 8 1 ASP A 76 ? ? -4.87 57.79 9 1 LYS B 18 ? ? 73.09 33.95 10 1 GLU B 24 ? ? -64.09 -173.43 11 1 LYS B 27 ? ? -66.38 -159.21 12 1 LYS B 33 ? ? -44.82 -81.60 13 1 ASN B 35 ? ? 70.53 74.45 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ARG A 74 ? ? GLU A 75 ? ? 147.38 2 1 GLU A 75 ? ? ASP A 76 ? ? -138.93 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3COQ 'double helix' 3COQ 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 B DG 20 1_555 0.118 -0.278 0.088 -6.676 -13.186 -1.251 1 D_DC2:DG40_E D 2 ? E 40 ? 19 1 1 A DC 3 1_555 B DG 19 1_555 0.752 -0.292 -0.276 0.256 -2.014 -1.445 2 D_DC3:DG39_E D 3 ? E 39 ? 19 1 1 A DG 4 1_555 B DC 18 1_555 -0.482 -0.163 -0.053 0.953 -20.397 -2.949 3 D_DG4:DC38_E D 4 ? E 38 ? 19 1 1 A DG 5 1_555 B DC 17 1_555 -0.291 -0.275 -0.078 1.309 7.383 -5.429 4 D_DG5:DC37_E D 5 ? E 37 ? 19 1 1 A DA 6 1_555 B DT 16 1_555 0.216 -0.262 -0.077 3.851 -12.728 -7.103 5 D_DA6:DT36_E D 6 ? E 36 ? 20 1 1 A DG 7 1_555 B DC 15 1_555 -0.267 -0.431 0.471 4.607 -13.812 5.153 6 D_DG7:DC35_E D 7 ? E 35 ? 19 1 1 A DG 8 1_555 B DC 14 1_555 -0.274 -0.315 0.182 5.933 -10.187 -7.309 7 D_DG8:DC34_E D 8 ? E 34 ? 19 1 1 A DA 9 1_555 B DT 13 1_555 0.279 -0.179 -0.007 10.181 -22.410 -0.631 8 D_DA9:DT33_E D 9 ? E 33 ? 20 1 1 A DC 10 1_555 B DG 12 1_555 -0.199 -0.036 -0.276 6.571 -12.399 -1.617 9 D_DC10:DG32_E D 10 ? E 32 ? 19 1 1 A DA 11 1_555 B DT 11 1_555 0.459 -0.073 0.003 -5.246 -22.904 -1.029 10 D_DA11:DT31_E D 11 ? E 31 ? 20 1 1 A DG 12 1_555 B DC 10 1_555 -0.065 -0.392 -0.058 -3.966 -10.615 -1.399 11 D_DG12:DC30_E D 12 ? E 30 ? 19 1 1 A DT 13 1_555 B DA 9 1_555 -0.291 -0.060 -0.213 -6.668 -17.364 2.550 12 D_DT13:DA29_E D 13 ? E 29 ? 20 1 1 A DC 14 1_555 B DG 8 1_555 0.006 -0.153 0.063 -6.092 -9.365 -7.515 13 D_DC14:DG28_E D 14 ? E 28 ? 19 1 1 A DC 15 1_555 B DG 7 1_555 -0.219 -0.340 0.351 -2.362 -16.115 1.594 14 D_DC15:DG27_E D 15 ? E 27 ? 19 1 1 A DT 16 1_555 B DA 6 1_555 -0.176 -0.132 0.104 -7.921 -7.970 0.162 15 D_DT16:DA26_E D 16 ? E 26 ? 20 1 1 A DC 17 1_555 B DG 5 1_555 -0.087 -0.265 -0.365 1.428 1.193 -6.249 16 D_DC17:DG25_E D 17 ? E 25 ? 19 1 1 A DC 18 1_555 B DG 4 1_555 0.108 -0.109 0.283 -4.870 -15.479 -5.799 17 D_DC18:DG24_E D 18 ? E 24 ? 19 1 1 A DG 19 1_555 B DC 3 1_555 -0.483 -0.142 -0.013 1.968 -5.317 0.858 18 D_DG19:DC23_E D 19 ? E 23 ? 19 1 1 A DG 20 1_555 B DC 2 1_555 -0.169 -0.258 0.160 -0.390 -14.406 -1.261 19 D_DG20:DC22_E D 20 ? E 22 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 20 1_555 A DC 3 1_555 B DG 19 1_555 0.743 1.213 3.168 5.627 2.745 38.975 1.473 -0.438 3.314 4.082 -8.368 39.455 1 DD_DC2DC3:DG39DG40_EE D 2 ? E 40 ? D 3 ? E 39 ? 1 A DC 3 1_555 B DG 19 1_555 A DG 4 1_555 B DC 18 1_555 -1.264 1.311 3.291 -4.474 8.246 32.479 0.813 1.392 3.643 14.372 7.798 33.772 2 DD_DC3DG4:DC38DG39_EE D 3 ? E 39 ? D 4 ? E 38 ? 1 A DG 4 1_555 B DC 18 1_555 A DG 5 1_555 B DC 17 1_555 1.557 0.626 3.408 2.132 -9.523 37.628 2.141 -2.073 3.241 -14.469 -3.239 38.828 3 DD_DG4DG5:DC37DC38_EE D 4 ? E 38 ? D 5 ? E 37 ? 1 A DG 5 1_555 B DC 17 1_555 A DA 6 1_555 B DT 16 1_555 -1.323 0.286 3.345 -4.726 7.217 37.807 -0.501 1.383 3.474 10.964 7.180 38.744 4 DD_DG5DA6:DT36DC37_EE D 5 ? E 37 ? D 6 ? E 36 ? 1 A DA 6 1_555 B DT 16 1_555 A DG 7 1_555 B DC 15 1_555 0.580 -0.321 3.241 -6.832 3.201 31.654 -1.115 -2.193 3.008 5.766 12.307 32.518 5 DD_DA6DG7:DC35DT36_EE D 6 ? E 36 ? D 7 ? E 35 ? 1 A DG 7 1_555 B DC 15 1_555 A DG 8 1_555 B DC 14 1_555 -0.024 0.008 3.177 4.213 3.266 32.552 -0.525 0.738 3.136 5.778 -7.453 32.974 6 DD_DG7DG8:DC34DC35_EE D 7 ? E 35 ? D 8 ? E 34 ? 1 A DG 8 1_555 B DC 14 1_555 A DA 9 1_555 B DT 13 1_555 -0.682 1.017 3.321 0.470 -2.883 38.451 1.898 1.092 3.231 -4.369 -0.712 38.558 7 DD_DG8DA9:DT33DC34_EE D 8 ? E 34 ? D 9 ? E 33 ? 1 A DA 9 1_555 B DT 13 1_555 A DC 10 1_555 B DG 12 1_555 0.675 -0.937 3.282 1.917 2.006 32.776 -1.998 -0.865 3.253 3.546 -3.390 32.890 8 DD_DA9DC10:DG32DT33_EE D 9 ? E 33 ? D 10 ? E 32 ? 1 A DC 10 1_555 B DG 12 1_555 A DA 11 1_555 B DT 11 1_555 -0.807 0.391 3.693 -2.632 2.499 38.370 0.240 0.851 3.755 3.792 3.994 38.535 9 DD_DC10DA11:DT31DG32_EE D 10 ? E 32 ? D 11 ? E 31 ? 1 A DA 11 1_555 B DT 11 1_555 A DG 12 1_555 B DC 10 1_555 0.752 0.044 3.258 0.763 5.459 32.194 -0.869 -1.205 3.238 9.755 -1.363 32.650 10 DD_DA11DG12:DC30DT31_EE D 11 ? E 31 ? D 12 ? E 30 ? 1 A DG 12 1_555 B DC 10 1_555 A DT 13 1_555 B DA 9 1_555 -0.643 -0.779 3.373 1.171 -2.329 33.419 -0.954 1.314 3.395 -4.043 -2.032 33.518 11 DD_DG12DT13:DA29DC30_EE D 12 ? E 30 ? D 13 ? E 29 ? 1 A DT 13 1_555 B DA 9 1_555 A DC 14 1_555 B DG 8 1_555 0.707 1.316 3.245 0.229 0.697 37.819 1.941 -1.062 3.272 1.075 -0.353 37.826 12 DD_DT13DC14:DG28DA29_EE D 13 ? E 29 ? D 14 ? E 28 ? 1 A DC 14 1_555 B DG 8 1_555 A DC 15 1_555 B DG 7 1_555 -0.329 -0.095 3.250 -6.501 2.010 28.489 -0.626 -0.762 3.230 4.012 12.977 29.274 13 DD_DC14DC15:DG27DG28_EE D 14 ? E 28 ? D 15 ? E 27 ? 1 A DC 15 1_555 B DG 7 1_555 A DT 16 1_555 B DA 6 1_555 -0.072 -0.286 3.319 6.114 4.719 37.178 -1.047 0.898 3.209 7.305 -9.465 37.944 14 DD_DC15DT16:DA26DG27_EE D 15 ? E 27 ? D 16 ? E 26 ? 1 A DT 16 1_555 B DA 6 1_555 A DC 17 1_555 B DG 5 1_555 0.932 0.136 3.167 8.566 3.738 34.594 -0.320 -0.276 3.294 6.148 -14.089 35.797 15 DD_DT16DC17:DG25DA26_EE D 16 ? E 26 ? D 17 ? E 25 ? 1 A DC 17 1_555 B DG 5 1_555 A DC 18 1_555 B DG 4 1_555 -1.360 0.317 3.638 -7.550 -3.941 36.107 1.107 0.975 3.782 -6.252 11.977 37.066 16 DD_DC17DC18:DG24DG25_EE D 17 ? E 25 ? D 18 ? E 24 ? 1 A DC 18 1_555 B DG 4 1_555 A DG 19 1_555 B DC 3 1_555 1.349 1.086 3.156 4.124 1.451 36.265 1.534 -1.586 3.324 2.320 -6.596 36.518 17 DD_DC18DG19:DC23DG24_EE D 18 ? E 24 ? D 19 ? E 23 ? 1 A DG 19 1_555 B DC 3 1_555 A DG 20 1_555 B DC 2 1_555 -1.157 1.331 3.381 -4.784 4.724 38.895 1.371 1.105 3.623 7.030 7.120 39.450 18 DD_DG19DG20:DC22DC23_EE D 19 ? E 23 ? D 20 ? E 22 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 5 'ZINC ION' ZN 6 water HOH #