HEADER TRANSFERASE 31-MAR-08 3CP6 TITLE CRYSTAL STRUCTURE OF HUMAN FARNESYL DIPHOSPHATE SYNTHASE (T201A TITLE 2 MUTANT) COMPLEXED WITH MG AND BIPHOSPHONATE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL PYROPHOSPHATE SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: (FPP SYNTHETASE) (FPS) (FARNESYL DIPHOSPHATE SYNTHETASE) COMPND 5 [INCLUDES: DIMETHYLALLYLTRANSTRANSFERASE (EC 2.5.1.1); COMPND 6 GERANYLTRANSTRANSFERASE (EC 2.5.1.10)]; COMPND 7 EC: 2.5.1.1, 2.5.1.10; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FDPS, FPS, KIAA1293; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11 DERIVATIVE KEYWDS ISOPRENOID PATHWAY, CHOLESTEROL SYNTHESIS, BISPHOSPHONATE, STRUCTURAL KEYWDS 2 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, CHOLESTEROL KEYWDS 3 BIOSYNTHESIS, HOST-VIRUS INTERACTION ISOPRENE BIOSYNTHESIS, LIPID KEYWDS 4 SYNTHESIS, STEROID BIOSYNTHESIS, STEROL BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.S.PILKA,J.E.DUNFORD,K.GUO,A.C.W.PIKE,F.VON DELFT,B.L.BARNETT, AUTHOR 2 F.H.EBETINO,C.H.ARROWSMITH,C.BOUNTRA,A.M.EDWARDS,R.G.G.RUSSELL, AUTHOR 3 U.OPPERMANN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 8 20-SEP-23 3CP6 1 REMARK REVDAT 7 01-FEB-23 3CP6 1 SEQADV REVDAT 6 20-OCT-21 3CP6 1 REMARK SEQADV LINK REVDAT 5 25-OCT-17 3CP6 1 REMARK REVDAT 4 13-JUL-11 3CP6 1 VERSN REVDAT 3 24-FEB-09 3CP6 1 VERSN REVDAT 2 29-APR-08 3CP6 1 REMARK REVDAT 1 15-APR-08 3CP6 0 JRNL AUTH E.S.PILKA,J.E.DUNFORD,K.GUO,A.C.W.PIKE,F.VON DELFT, JRNL AUTH 2 B.L.BARNETT,F.H.EBETINO,C.H.ARROWSMITH,C.BOUNTRA, JRNL AUTH 3 A.M.EDWARDS,R.G.G.RUSSELL,U.OPPERMANN JRNL TITL HUMAN FARNESYL DIPHOSPHATE SYNTHASE (T201A MUTANT) COMPLEXED JRNL TITL 2 WITH MG AND BIPHOSPHONATE INHIBITOR. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1547 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2059 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2639 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 210 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.80000 REMARK 3 B22 (A**2) : -1.80000 REMARK 3 B33 (A**2) : 3.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.507 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2748 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1825 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3741 ; 1.404 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4451 ; 0.979 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 5.797 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;34.571 ;24.552 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;14.028 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;21.538 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 416 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3057 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 565 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1668 ; 2.385 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 674 ; 0.714 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2676 ; 3.548 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1080 ; 6.121 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1064 ; 8.540 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 52 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9023 27.2742 13.6747 REMARK 3 T TENSOR REMARK 3 T11: -0.0549 T22: 0.2598 REMARK 3 T33: 0.0934 T12: -0.0676 REMARK 3 T13: 0.1381 T23: -0.1937 REMARK 3 L TENSOR REMARK 3 L11: 2.8363 L22: 1.2553 REMARK 3 L33: 2.5927 L12: 1.6328 REMARK 3 L13: 0.4633 L23: 0.3647 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: -0.2405 S13: -0.1919 REMARK 3 S21: 0.3585 S22: -0.2760 S23: 0.2436 REMARK 3 S31: 0.2804 S32: -0.6661 S33: 0.2881 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4331 24.7797 3.6165 REMARK 3 T TENSOR REMARK 3 T11: -0.0672 T22: 0.0474 REMARK 3 T33: 0.2773 T12: 0.0005 REMARK 3 T13: 0.0573 T23: -0.1478 REMARK 3 L TENSOR REMARK 3 L11: 3.0468 L22: 4.1016 REMARK 3 L33: 3.1534 L12: 1.4479 REMARK 3 L13: 0.9064 L23: -1.0532 REMARK 3 S TENSOR REMARK 3 S11: 0.1096 S12: -0.5367 S13: 0.7339 REMARK 3 S21: 0.1216 S22: -0.1562 S23: 0.5324 REMARK 3 S31: -0.0559 S32: -0.3115 S33: 0.0466 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3596 25.2965 -0.8913 REMARK 3 T TENSOR REMARK 3 T11: 0.0854 T22: 0.0746 REMARK 3 T33: 0.0783 T12: 0.0069 REMARK 3 T13: 0.0014 T23: -0.0452 REMARK 3 L TENSOR REMARK 3 L11: 2.1043 L22: 1.9126 REMARK 3 L33: 1.0534 L12: 0.4472 REMARK 3 L13: 0.6873 L23: -0.2557 REMARK 3 S TENSOR REMARK 3 S11: 0.1130 S12: -0.1936 S13: 0.1030 REMARK 3 S21: -0.0154 S22: -0.0470 S23: 0.1084 REMARK 3 S31: 0.1301 S32: -0.0509 S33: -0.0660 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 185 A 321 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7964 36.4026 -17.8616 REMARK 3 T TENSOR REMARK 3 T11: 0.0318 T22: 0.0251 REMARK 3 T33: 0.1236 T12: 0.0320 REMARK 3 T13: -0.0022 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.1229 L22: 1.0510 REMARK 3 L33: 0.8761 L12: 0.3578 REMARK 3 L13: 0.0538 L23: -0.5389 REMARK 3 S TENSOR REMARK 3 S11: 0.0618 S12: 0.2025 S13: 0.1971 REMARK 3 S21: -0.1560 S22: 0.0212 S23: 0.0437 REMARK 3 S31: 0.0439 S32: 0.0781 S33: -0.0830 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 322 A 348 REMARK 3 ORIGIN FOR THE GROUP (A): -6.3829 29.3351 -16.4115 REMARK 3 T TENSOR REMARK 3 T11: 0.0001 T22: 0.0613 REMARK 3 T33: 0.1871 T12: 0.0171 REMARK 3 T13: -0.1175 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 2.9627 L22: 2.3266 REMARK 3 L33: 4.5685 L12: -0.2050 REMARK 3 L13: -1.1550 L23: -1.6593 REMARK 3 S TENSOR REMARK 3 S11: 0.1456 S12: -0.0807 S13: 0.1149 REMARK 3 S21: 0.1476 S22: 0.0621 S23: -0.1803 REMARK 3 S31: -0.1925 S32: 0.0770 S33: -0.2077 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CP6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047046. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28451 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 29.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : 0.12200 REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.61200 REMARK 200 R SYM FOR SHELL (I) : 0.65800 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2QIS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NH4CL, 20% PEG 6000, 10% ETHYLENE REMARK 280 GLYCOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.45950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 56.26550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.26550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.72975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.26550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 56.26550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.18925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.26550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.26550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 15.72975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 56.26550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.26550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.18925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 31.45950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 ARG A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 GLY A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 ASP A 4 REMARK 465 GLN A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 ASP A 8 REMARK 465 VAL A 9 REMARK 465 TYR A 10 REMARK 465 ASP A 31 REMARK 465 GLU A 32 REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 465 TYR A 349 REMARK 465 LYS A 350 REMARK 465 ARG A 351 REMARK 465 ARG A 352 REMARK 465 LYS A 353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 LYS A 14 CE NZ REMARK 470 GLN A 15 OE1 NE2 REMARK 470 GLN A 19 CG CD OE1 NE2 REMARK 470 VAL A 27 CG1 CG2 REMARK 470 GLU A 30 CD OE1 OE2 REMARK 470 ILE A 54 CD1 REMARK 470 LYS A 57 CD CE NZ REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 LYS A 198 CE NZ REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 LYS A 287 NZ REMARK 470 ARG A 346 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 347 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 53 35.26 -140.96 REMARK 500 VAL A 124 -75.65 -103.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 183 ASP A 184 149.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD2 REMARK 620 2 ASP A 107 OD2 91.3 REMARK 620 3 RSX A 401 O5 93.9 72.5 REMARK 620 4 RSX A 401 O2 96.7 162.5 91.4 REMARK 620 5 HOH A 505 O 167.8 81.6 93.4 92.8 REMARK 620 6 HOH A 548 O 80.3 103.1 172.7 93.7 91.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 103 OD1 REMARK 620 2 ASP A 107 OD2 93.4 REMARK 620 3 RSX A 401 O5 95.4 78.0 REMARK 620 4 HOH A 510 O 175.9 82.7 82.6 REMARK 620 5 HOH A 521 O 93.6 97.2 170.0 88.1 REMARK 620 6 HOH A 558 O 93.6 170.5 94.9 90.1 88.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 243 OD2 REMARK 620 2 RSX A 401 O4 101.0 REMARK 620 3 RSX A 401 O1 91.9 94.2 REMARK 620 4 HOH A 537 O 82.5 88.6 174.1 REMARK 620 5 HOH A 617 O 163.6 90.6 98.8 86.4 REMARK 620 6 HOH A 620 O 85.7 172.9 88.1 89.8 82.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RSX A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YQ7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN FARNESYL DIPHOSPHATE SYNTHASE COMPLEXED REMARK 900 WITH RISEDRONATE REMARK 900 RELATED ID: 2QIS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN FARNESYL PYROPHOSPHATE SYNTHASE T210S REMARK 900 MUTANT BOUND TO RISEDRONATE REMARK 900 RELATED ID: 1ZW5 RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF FARNESYL DIPHOSPHATE SYNTHASE PROTEIN REMARK 900 RELATED ID: 1YV5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN FARNESYL DIPHOSPHATE SYNTHASE COMPLEXED REMARK 900 WITH MG AND RISEDRONATE REMARK 900 RELATED ID: 3B7L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN FARNESYL DIPHOSPHATE SYNTHASE COMPLEXED REMARK 900 WITH MG AND MINODRONATE DBREF 3CP6 A 1 353 UNP P14324 FPPS_HUMAN 1 353 SEQADV 3CP6 MET A -22 UNP P14324 EXPRESSION TAG SEQADV 3CP6 GLY A -21 UNP P14324 EXPRESSION TAG SEQADV 3CP6 SER A -20 UNP P14324 EXPRESSION TAG SEQADV 3CP6 SER A -19 UNP P14324 EXPRESSION TAG SEQADV 3CP6 HIS A -18 UNP P14324 EXPRESSION TAG SEQADV 3CP6 HIS A -17 UNP P14324 EXPRESSION TAG SEQADV 3CP6 HIS A -16 UNP P14324 EXPRESSION TAG SEQADV 3CP6 HIS A -15 UNP P14324 EXPRESSION TAG SEQADV 3CP6 HIS A -14 UNP P14324 EXPRESSION TAG SEQADV 3CP6 HIS A -13 UNP P14324 EXPRESSION TAG SEQADV 3CP6 SER A -12 UNP P14324 EXPRESSION TAG SEQADV 3CP6 SER A -11 UNP P14324 EXPRESSION TAG SEQADV 3CP6 GLY A -10 UNP P14324 EXPRESSION TAG SEQADV 3CP6 ARG A -9 UNP P14324 EXPRESSION TAG SEQADV 3CP6 GLU A -8 UNP P14324 EXPRESSION TAG SEQADV 3CP6 ASN A -7 UNP P14324 EXPRESSION TAG SEQADV 3CP6 LEU A -6 UNP P14324 EXPRESSION TAG SEQADV 3CP6 TYR A -5 UNP P14324 EXPRESSION TAG SEQADV 3CP6 PHE A -4 UNP P14324 EXPRESSION TAG SEQADV 3CP6 GLN A -3 UNP P14324 EXPRESSION TAG SEQADV 3CP6 GLY A -2 UNP P14324 EXPRESSION TAG SEQADV 3CP6 HIS A -1 UNP P14324 EXPRESSION TAG SEQADV 3CP6 MET A 0 UNP P14324 EXPRESSION TAG SEQADV 3CP6 ALA A 201 UNP P14324 THR 201 ENGINEERED MUTATION SEQRES 1 A 376 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 376 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET MET ASN GLY SEQRES 3 A 376 ASP GLN ASN SER ASP VAL TYR ALA GLN GLU LYS GLN ASP SEQRES 4 A 376 PHE VAL GLN HIS PHE SER GLN ILE VAL ARG VAL LEU THR SEQRES 5 A 376 GLU ASP GLU MET GLY HIS PRO GLU ILE GLY ASP ALA ILE SEQRES 6 A 376 ALA ARG LEU LYS GLU VAL LEU GLU TYR ASN ALA ILE GLY SEQRES 7 A 376 GLY LYS TYR ASN ARG GLY LEU THR VAL VAL VAL ALA PHE SEQRES 8 A 376 ARG GLU LEU VAL GLU PRO ARG LYS GLN ASP ALA ASP SER SEQRES 9 A 376 LEU GLN ARG ALA TRP THR VAL GLY TRP CYS VAL GLU LEU SEQRES 10 A 376 LEU GLN ALA PHE PHE LEU VAL ALA ASP ASP ILE MET ASP SEQRES 11 A 376 SER SER LEU THR ARG ARG GLY GLN ILE CYS TRP TYR GLN SEQRES 12 A 376 LYS PRO GLY VAL GLY LEU ASP ALA ILE ASN ASP ALA ASN SEQRES 13 A 376 LEU LEU GLU ALA CYS ILE TYR ARG LEU LEU LYS LEU TYR SEQRES 14 A 376 CYS ARG GLU GLN PRO TYR TYR LEU ASN LEU ILE GLU LEU SEQRES 15 A 376 PHE LEU GLN SER SER TYR GLN THR GLU ILE GLY GLN THR SEQRES 16 A 376 LEU ASP LEU LEU THR ALA PRO GLN GLY ASN VAL ASP LEU SEQRES 17 A 376 VAL ARG PHE THR GLU LYS ARG TYR LYS SER ILE VAL LYS SEQRES 18 A 376 TYR LYS ALA ALA PHE TYR SER PHE TYR LEU PRO ILE ALA SEQRES 19 A 376 ALA ALA MET TYR MET ALA GLY ILE ASP GLY GLU LYS GLU SEQRES 20 A 376 HIS ALA ASN ALA LYS LYS ILE LEU LEU GLU MET GLY GLU SEQRES 21 A 376 PHE PHE GLN ILE GLN ASP ASP TYR LEU ASP LEU PHE GLY SEQRES 22 A 376 ASP PRO SER VAL THR GLY LYS ILE GLY THR ASP ILE GLN SEQRES 23 A 376 ASP ASN LYS CYS SER TRP LEU VAL VAL GLN CYS LEU GLN SEQRES 24 A 376 ARG ALA THR PRO GLU GLN TYR GLN ILE LEU LYS GLU ASN SEQRES 25 A 376 TYR GLY GLN LYS GLU ALA GLU LYS VAL ALA ARG VAL LYS SEQRES 26 A 376 ALA LEU TYR GLU GLU LEU ASP LEU PRO ALA VAL PHE LEU SEQRES 27 A 376 GLN TYR GLU GLU ASP SER TYR SER HIS ILE MET ALA LEU SEQRES 28 A 376 ILE GLU GLN TYR ALA ALA PRO LEU PRO PRO ALA VAL PHE SEQRES 29 A 376 LEU GLY LEU ALA ARG LYS ILE TYR LYS ARG ARG LYS HET MG A 501 1 HET MG A 502 1 HET MG A 503 1 HET RSX A 401 17 HETNAM MG MAGNESIUM ION HETNAM RSX (4AS,7AR)-OCTAHYDRO-1H-CYCLOPENTA[B]PYRIDINE-6,6- HETNAM 2 RSX DIYLBIS(PHOSPHONIC ACID) FORMUL 2 MG 3(MG 2+) FORMUL 5 RSX C8 H17 N O6 P2 FORMUL 6 HOH *210(H2 O) HELIX 1 1 GLU A 13 GLU A 30 1 18 HELIX 2 2 HIS A 35 ALA A 53 1 19 HELIX 3 3 TYR A 58 VAL A 72 1 15 HELIX 4 4 GLU A 73 GLN A 77 5 5 HELIX 5 5 ASP A 78 ASP A 107 1 30 HELIX 6 6 TRP A 118 LYS A 121 5 4 HELIX 7 7 VAL A 124 LEU A 126 5 3 HELIX 8 8 ASP A 127 ARG A 148 1 22 HELIX 9 9 TYR A 152 THR A 177 1 26 HELIX 10 10 THR A 189 SER A 205 1 17 HELIX 11 11 PHE A 206 ALA A 217 1 12 HELIX 12 12 GLY A 221 GLY A 250 1 30 HELIX 13 13 ASP A 251 GLY A 256 1 6 HELIX 14 14 SER A 268 ALA A 278 1 11 HELIX 15 15 THR A 279 TYR A 290 1 12 HELIX 16 16 GLU A 294 LEU A 308 1 15 HELIX 17 17 ASP A 309 ALA A 333 1 25 HELIX 18 18 PRO A 338 ARG A 346 1 9 SHEET 1 A 2 THR A 111 ARG A 112 0 SHEET 2 A 2 GLN A 115 ILE A 116 -1 O GLN A 115 N ARG A 112 LINK OD2 ASP A 103 MG MG A 501 1555 1555 2.06 LINK OD1 ASP A 103 MG MG A 503 1555 1555 1.95 LINK OD2 ASP A 107 MG MG A 501 1555 1555 2.30 LINK OD2 ASP A 107 MG MG A 503 1555 1555 2.15 LINK OD2 ASP A 243 MG MG A 502 1555 1555 2.11 LINK O5 RSX A 401 MG MG A 501 1555 1555 2.25 LINK O2 RSX A 401 MG MG A 501 1555 1555 2.03 LINK O4 RSX A 401 MG MG A 502 1555 1555 2.11 LINK O1 RSX A 401 MG MG A 502 1555 1555 1.96 LINK O5 RSX A 401 MG MG A 503 1555 1555 2.12 LINK MG MG A 501 O HOH A 505 1555 1555 2.00 LINK MG MG A 501 O HOH A 548 1555 1555 2.06 LINK MG MG A 502 O HOH A 537 1555 1555 2.01 LINK MG MG A 502 O HOH A 617 1555 1555 2.10 LINK MG MG A 502 O HOH A 620 1555 1555 2.14 LINK MG MG A 503 O HOH A 510 1555 1555 1.91 LINK MG MG A 503 O HOH A 521 1555 1555 1.95 LINK MG MG A 503 O HOH A 558 1555 1555 2.13 CISPEP 1 ALA A 334 PRO A 335 0 8.27 SITE 1 AC1 4 ASP A 103 ASP A 107 HOH A 505 HOH A 548 SITE 1 AC2 4 ASP A 243 HOH A 537 HOH A 617 HOH A 620 SITE 1 AC3 5 ASP A 103 ASP A 107 HOH A 510 HOH A 521 SITE 2 AC3 5 HOH A 558 SITE 1 AC4 19 ASP A 103 ASP A 107 ARG A 112 GLN A 171 SITE 2 AC4 19 LYS A 200 TYR A 204 GLN A 240 ASP A 243 SITE 3 AC4 19 LYS A 257 HOH A 505 HOH A 507 HOH A 510 SITE 4 AC4 19 HOH A 537 HOH A 548 HOH A 558 HOH A 568 SITE 5 AC4 19 HOH A 617 HOH A 619 HOH A 620 CRYST1 112.531 112.531 62.919 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008886 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015893 0.00000