HEADER CELL CYCLE 31-MAR-08 3CPF TITLE CRYSTAL STRUCTURE OF HUMAN EUKARYOTIC TRANSLATION INITIATION FACTOR TITLE 2 EIF5A COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 5A-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 15-151; COMPND 5 SYNONYM: EIF-5A-1, EIF-5A1, EUKARYOTIC INITIATION FACTOR 5A ISOFORM COMPND 6 1, EIF-5A, EIF-4D, REV-BINDING FACTOR; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EIF5A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS STRUCTURAL GENOMICS CONSORTIUM, LEUKEMIA, APOPTOSIS, SGC, HYPUSINE, KEYWDS 2 INITIATION FACTOR, NUCLEUS, PROTEIN BIOSYNTHESIS, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR L.NEDYALKOVA,Y.TONG,W.TEMPEL,B.HONG,F.MACKENZIE,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,A.BOCHKAREV,H.PARK,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 7 30-AUG-23 3CPF 1 REMARK SEQADV REVDAT 6 25-OCT-17 3CPF 1 REMARK REVDAT 5 13-JUL-11 3CPF 1 VERSN REVDAT 4 14-JUL-09 3CPF 1 JRNL REVDAT 3 24-FEB-09 3CPF 1 VERSN REVDAT 2 04-NOV-08 3CPF 1 REMARK REVDAT 1 15-APR-08 3CPF 0 JRNL AUTH Y.TONG,I.PARK,B.S.HONG,L.NEDYALKOVA,W.TEMPEL,H.W.PARK JRNL TITL CRYSTAL STRUCTURE OF HUMAN EIF5A1: INSIGHT INTO FUNCTIONAL JRNL TITL 2 SIMILARITY OF HUMAN EIF5A1 AND EIF5A2. JRNL REF PROTEINS V. 75 1040 2009 JRNL REFN ISSN 0887-3585 JRNL PMID 19280598 JRNL DOI 10.1002/PROT.22378 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 11434 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.557 REMARK 3 FREE R VALUE TEST SET COUNT : 521 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 816 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : 0.3950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1889 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.07000 REMARK 3 B22 (A**2) : 1.07000 REMARK 3 B33 (A**2) : -2.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.471 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.318 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.260 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.845 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1915 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1245 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2594 ; 1.338 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3063 ; 1.349 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 6.078 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;36.229 ;25.467 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 315 ;16.118 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.698 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 307 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2156 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 348 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1277 ; 0.954 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 524 ; 0.186 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2024 ; 1.586 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 638 ; 1.018 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 570 ; 1.564 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 48 REMARK 3 ORIGIN FOR THE GROUP (A): -64.5670 63.3930 10.0210 REMARK 3 T TENSOR REMARK 3 T11: 0.1156 T22: 0.0106 REMARK 3 T33: 0.0868 T12: 0.0242 REMARK 3 T13: -0.1728 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.0017 L22: 3.5547 REMARK 3 L33: 6.7586 L12: -0.1728 REMARK 3 L13: 0.4984 L23: -1.0358 REMARK 3 S TENSOR REMARK 3 S11: -0.2514 S12: 0.2583 S13: 0.3810 REMARK 3 S21: -0.5745 S22: 0.1765 S23: 0.1013 REMARK 3 S31: -0.0660 S32: -0.4671 S33: 0.0749 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): -66.5750 57.3090 13.1230 REMARK 3 T TENSOR REMARK 3 T11: 0.0731 T22: -0.0554 REMARK 3 T33: 0.0334 T12: 0.0179 REMARK 3 T13: -0.0888 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.1733 L22: 3.1929 REMARK 3 L33: 8.7873 L12: -0.2053 REMARK 3 L13: -0.7867 L23: -2.0233 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: 0.0885 S13: 0.1420 REMARK 3 S21: -0.6682 S22: -0.0775 S23: 0.5351 REMARK 3 S31: 0.5948 S32: -0.6505 S33: 0.1071 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): -72.8570 63.6890 7.5870 REMARK 3 T TENSOR REMARK 3 T11: 0.2233 T22: 0.3581 REMARK 3 T33: 0.3307 T12: 0.0970 REMARK 3 T13: -0.3214 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.8856 L22: 2.7699 REMARK 3 L33: 6.4479 L12: 2.1251 REMARK 3 L13: 1.8967 L23: 0.8330 REMARK 3 S TENSOR REMARK 3 S11: 0.2020 S12: -0.7822 S13: 0.3234 REMARK 3 S21: -0.1725 S22: 0.0936 S23: 0.8017 REMARK 3 S31: 0.0659 S32: -1.7290 S33: -0.2956 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): -51.2880 69.7050 19.6030 REMARK 3 T TENSOR REMARK 3 T11: 0.0679 T22: 0.0197 REMARK 3 T33: -0.0023 T12: -0.0073 REMARK 3 T13: -0.0401 T23: 0.0734 REMARK 3 L TENSOR REMARK 3 L11: 25.1867 L22: 1.9081 REMARK 3 L33: 6.4265 L12: -5.5093 REMARK 3 L13: 12.4347 L23: -2.2704 REMARK 3 S TENSOR REMARK 3 S11: -0.2870 S12: 0.6393 S13: 1.0262 REMARK 3 S21: -0.2328 S22: -0.0563 S23: -0.0070 REMARK 3 S31: -0.4663 S32: 0.4939 S33: 0.3433 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): -41.4920 67.2320 31.9790 REMARK 3 T TENSOR REMARK 3 T11: -0.0574 T22: -0.0005 REMARK 3 T33: -0.1154 T12: 0.0452 REMARK 3 T13: -0.0436 T23: -0.0670 REMARK 3 L TENSOR REMARK 3 L11: 5.2084 L22: 10.9203 REMARK 3 L33: 1.0568 L12: 4.3796 REMARK 3 L13: -0.5603 L23: -0.6603 REMARK 3 S TENSOR REMARK 3 S11: -0.2622 S12: -0.0036 S13: 0.1324 REMARK 3 S21: 0.3264 S22: 0.2066 S23: -0.3429 REMARK 3 S31: -0.2834 S32: 0.2367 S33: 0.0557 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): -44.7910 60.8420 26.3970 REMARK 3 T TENSOR REMARK 3 T11: -0.0387 T22: 0.0032 REMARK 3 T33: -0.1016 T12: -0.0231 REMARK 3 T13: 0.0003 T23: -0.0493 REMARK 3 L TENSOR REMARK 3 L11: 7.1969 L22: 3.2604 REMARK 3 L33: 3.6550 L12: -0.1464 REMARK 3 L13: 1.1293 L23: 0.1640 REMARK 3 S TENSOR REMARK 3 S11: -0.2953 S12: 0.4011 S13: -0.2580 REMARK 3 S21: -0.1494 S22: 0.2131 S23: -0.1629 REMARK 3 S31: -0.1147 S32: 0.0769 S33: 0.0822 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 22 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0030 32.8160 17.9290 REMARK 3 T TENSOR REMARK 3 T11: 0.0992 T22: 0.0812 REMARK 3 T33: 0.0251 T12: 0.0352 REMARK 3 T13: 0.0046 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 15.4568 L22: 7.4126 REMARK 3 L33: 0.7991 L12: 1.2639 REMARK 3 L13: 2.1770 L23: 2.0753 REMARK 3 S TENSOR REMARK 3 S11: -0.2166 S12: 0.1187 S13: -0.3665 REMARK 3 S21: 1.2248 S22: 0.5437 S23: -1.0329 REMARK 3 S31: -0.3763 S32: -0.5065 S33: -0.3271 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 23 B 69 REMARK 3 ORIGIN FOR THE GROUP (A): -6.0440 28.7190 21.5700 REMARK 3 T TENSOR REMARK 3 T11: 0.1868 T22: 0.1820 REMARK 3 T33: 0.1308 T12: -0.1705 REMARK 3 T13: 0.1023 T23: -0.0668 REMARK 3 L TENSOR REMARK 3 L11: 10.3488 L22: 8.5002 REMARK 3 L33: 6.4056 L12: -3.0510 REMARK 3 L13: 0.0987 L23: -2.8720 REMARK 3 S TENSOR REMARK 3 S11: -0.0749 S12: -0.4173 S13: -1.3919 REMARK 3 S21: 0.7054 S22: -0.1193 S23: 0.5567 REMARK 3 S31: 0.8781 S32: -0.9028 S33: 0.1943 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 70 B 81 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2650 22.7040 19.8620 REMARK 3 T TENSOR REMARK 3 T11: 0.4563 T22: 0.0985 REMARK 3 T33: 0.5563 T12: -0.0204 REMARK 3 T13: -0.0524 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 8.8688 L22: 12.4961 REMARK 3 L33: 5.4549 L12: 1.9525 REMARK 3 L13: -2.3382 L23: -8.1555 REMARK 3 S TENSOR REMARK 3 S11: 0.2219 S12: 0.5002 S13: -2.5381 REMARK 3 S21: 0.6725 S22: -0.3820 S23: -0.8258 REMARK 3 S31: 0.8267 S32: 0.0505 S33: 0.1601 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 82 B 100 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0980 48.6230 15.1730 REMARK 3 T TENSOR REMARK 3 T11: 0.0939 T22: 0.5005 REMARK 3 T33: 0.0233 T12: 0.1073 REMARK 3 T13: 0.1279 T23: -0.0493 REMARK 3 L TENSOR REMARK 3 L11: 9.6670 L22: 10.3016 REMARK 3 L33: 0.0338 L12: -7.4876 REMARK 3 L13: -0.0740 L23: 0.4443 REMARK 3 S TENSOR REMARK 3 S11: 0.3520 S12: 1.2786 S13: 0.9500 REMARK 3 S21: 0.0355 S22: -0.7704 S23: -0.6470 REMARK 3 S31: -0.2085 S32: -0.1498 S33: 0.4184 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 101 B 124 REMARK 3 ORIGIN FOR THE GROUP (A): -17.6780 49.4900 13.8960 REMARK 3 T TENSOR REMARK 3 T11: 0.0367 T22: 0.3058 REMARK 3 T33: 0.1847 T12: 0.1098 REMARK 3 T13: 0.0542 T23: -0.0587 REMARK 3 L TENSOR REMARK 3 L11: 4.3907 L22: 5.7876 REMARK 3 L33: 10.0612 L12: 1.3867 REMARK 3 L13: -4.5383 L23: -1.6565 REMARK 3 S TENSOR REMARK 3 S11: 0.2779 S12: 1.0061 S13: -0.0422 REMARK 3 S21: -0.4138 S22: -0.0817 S23: -0.7132 REMARK 3 S31: 0.1055 S32: 0.0406 S33: -0.1962 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 125 B 151 REMARK 3 ORIGIN FOR THE GROUP (A): -16.9710 48.3110 18.8150 REMARK 3 T TENSOR REMARK 3 T11: -0.0130 T22: 0.3112 REMARK 3 T33: 0.0928 T12: 0.0450 REMARK 3 T13: -0.0092 T23: -0.1005 REMARK 3 L TENSOR REMARK 3 L11: 10.6465 L22: 5.0404 REMARK 3 L33: 1.4365 L12: -5.5428 REMARK 3 L13: -2.3693 L23: -0.1661 REMARK 3 S TENSOR REMARK 3 S11: 0.1342 S12: 0.6368 S13: 0.1459 REMARK 3 S21: -0.0447 S22: -0.3135 S23: 0.1946 REMARK 3 S31: -0.0481 S32: -0.0760 S33: 0.1793 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOMIC B-FACTORS ARE RESIDUALS FROM TLS REFINEMENT. REMARK 3 TLSMD, CNS, COOT, MOLPROBITY PROGRAMS HAVE ALSO BEEN USED IN REMARK 3 REFINEMENT REMARK 4 REMARK 4 3CPF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047054. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11503 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 0.96400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1X6O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350, 0.2M AMMONIUM SULFATE, REMARK 280 0.1M SODIUM CACODYLATE. CRYOPROTECTED WITH 20% PEG 3350 AND 20% REMARK 280 ETHYLENE GLYCOL, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.87600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.05950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.05950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.93800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.05950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.05950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.81400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.05950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.05950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.93800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.05950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.05950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 80.81400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.87600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 14 REMARK 465 GLY A 49 REMARK 465 LYS A 50 REMARK 465 HIS A 51 REMARK 465 GLY A 52 REMARK 465 ALA A 151 REMARK 465 GLY B 14 REMARK 465 THR B 45 REMARK 465 SER B 46 REMARK 465 LYS B 47 REMARK 465 THR B 48 REMARK 465 GLY B 49 REMARK 465 LYS B 50 REMARK 465 HIS B 51 REMARK 465 GLY B 52 REMARK 465 HIS B 53 REMARK 465 ALA B 54 REMARK 465 LYS B 55 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 15 OG REMARK 470 LYS A 27 CE NZ REMARK 470 LYS A 34 CE NZ REMARK 470 SER A 46 OG REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 THR A 48 OG1 CG2 REMARK 470 LYS A 126 CE NZ REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 SER B 15 OG REMARK 470 GLN B 21 CG CD OE1 NE2 REMARK 470 SER B 23 OG REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 ASN B 28 CG OD1 ND2 REMARK 470 LYS B 34 CG CD CE NZ REMARK 470 GLU B 42 CG CD OE1 OE2 REMARK 470 SER B 44 OG REMARK 470 VAL B 56 CG1 CG2 REMARK 470 HIS B 57 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 58 CG CD1 CD2 REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 LYS B 68 CG CD CE NZ REMARK 470 ILE B 72 CG1 CG2 CD1 REMARK 470 SER B 75 OG REMARK 470 THR B 76 OG1 CG2 REMARK 470 LYS B 85 CG CD CE NZ REMARK 470 ILE B 92 CG1 CG2 CD1 REMARK 470 ILE B 94 CG1 CG2 CD1 REMARK 470 GLN B 95 CG CD OE1 NE2 REMARK 470 ASP B 96 CG OD1 OD2 REMARK 470 ASP B 104 CG OD1 OD2 REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 ARG B 113 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 GLU B 132 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 139 UNK UNX A 5 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 129 CB CYS A 129 SG -0.162 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 28 -3.06 69.98 REMARK 500 ASP A 62 119.18 -34.83 REMARK 500 ASP A 71 144.19 -171.66 REMARK 500 PRO A 115 150.45 -47.42 REMARK 500 MET A 141 -137.17 54.53 REMARK 500 ASN B 28 -11.54 73.03 REMARK 500 VAL B 41 -76.72 -95.14 REMARK 500 THR B 76 43.84 -98.28 REMARK 500 MET B 141 -125.92 56.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 5 DBREF 3CPF A 15 151 UNP P63241 IF5A1_HUMAN 15 151 DBREF 3CPF B 15 151 UNP P63241 IF5A1_HUMAN 15 151 SEQADV 3CPF GLY A 14 UNP P63241 EXPRESSION TAG SEQADV 3CPF GLY B 14 UNP P63241 EXPRESSION TAG SEQRES 1 A 138 GLY SER ALA THR PHE PRO MET GLN CYS SER ALA LEU ARG SEQRES 2 A 138 LYS ASN GLY PHE VAL VAL LEU LYS GLY ARG PRO CYS LYS SEQRES 3 A 138 ILE VAL GLU MET SER THR SER LYS THR GLY LYS HIS GLY SEQRES 4 A 138 HIS ALA LYS VAL HIS LEU VAL GLY ILE ASP ILE PHE THR SEQRES 5 A 138 GLY LYS LYS TYR GLU ASP ILE CYS PRO SER THR HIS ASN SEQRES 6 A 138 MET ASP VAL PRO ASN ILE LYS ARG ASN ASP PHE GLN LEU SEQRES 7 A 138 ILE GLY ILE GLN ASP GLY TYR LEU SER LEU LEU GLN ASP SEQRES 8 A 138 SER GLY GLU VAL ARG GLU ASP LEU ARG LEU PRO GLU GLY SEQRES 9 A 138 ASP LEU GLY LYS GLU ILE GLU GLN LYS TYR ASP CYS GLY SEQRES 10 A 138 GLU GLU ILE LEU ILE THR VAL LEU SER ALA MET THR GLU SEQRES 11 A 138 GLU ALA ALA VAL ALA ILE LYS ALA SEQRES 1 B 138 GLY SER ALA THR PHE PRO MET GLN CYS SER ALA LEU ARG SEQRES 2 B 138 LYS ASN GLY PHE VAL VAL LEU LYS GLY ARG PRO CYS LYS SEQRES 3 B 138 ILE VAL GLU MET SER THR SER LYS THR GLY LYS HIS GLY SEQRES 4 B 138 HIS ALA LYS VAL HIS LEU VAL GLY ILE ASP ILE PHE THR SEQRES 5 B 138 GLY LYS LYS TYR GLU ASP ILE CYS PRO SER THR HIS ASN SEQRES 6 B 138 MET ASP VAL PRO ASN ILE LYS ARG ASN ASP PHE GLN LEU SEQRES 7 B 138 ILE GLY ILE GLN ASP GLY TYR LEU SER LEU LEU GLN ASP SEQRES 8 B 138 SER GLY GLU VAL ARG GLU ASP LEU ARG LEU PRO GLU GLY SEQRES 9 B 138 ASP LEU GLY LYS GLU ILE GLU GLN LYS TYR ASP CYS GLY SEQRES 10 B 138 GLU GLU ILE LEU ILE THR VAL LEU SER ALA MET THR GLU SEQRES 11 B 138 GLU ALA ALA VAL ALA ILE LYS ALA HET UNX A 1 1 HET UNX A 2 1 HET UNX A 3 1 HET UNX A 4 1 HET UNX A 5 1 HET UNX A 6 1 HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 UNX 6(X) FORMUL 9 HOH *9(H2 O) HELIX 1 1 SER A 23 LEU A 25 5 3 HELIX 2 2 GLU A 116 GLY A 130 1 15 HELIX 3 3 SER B 23 LEU B 25 5 3 HELIX 4 4 GLU B 116 CYS B 129 1 14 SHEET 1 A 2 THR A 17 GLN A 21 0 SHEET 2 A 2 ASN A 78 PRO A 82 -1 O VAL A 81 N PHE A 18 SHEET 1 B 4 PHE A 30 LEU A 33 0 SHEET 2 B 4 ARG A 36 SER A 46 -1 O CYS A 38 N VAL A 31 SHEET 3 B 4 LYS A 55 ASP A 62 -1 O LYS A 55 N SER A 46 SHEET 4 B 4 LYS A 68 PRO A 74 -1 O CYS A 73 N VAL A 56 SHEET 1 C 5 VAL A 108 ARG A 109 0 SHEET 2 C 5 TYR A 98 LEU A 102 -1 N LEU A 101 O ARG A 109 SHEET 3 C 5 LYS A 85 GLN A 95 -1 N GLN A 90 O LEU A 102 SHEET 4 C 5 LEU A 134 ALA A 140 -1 O VAL A 137 N ASN A 87 SHEET 5 C 5 GLU A 143 LYS A 150 -1 O VAL A 147 N THR A 136 SHEET 1 D 2 THR B 17 GLN B 21 0 SHEET 2 D 2 ASN B 78 PRO B 82 -1 O VAL B 81 N PHE B 18 SHEET 1 E 4 PHE B 30 LEU B 33 0 SHEET 2 E 4 ARG B 36 ILE B 40 -1 O CYS B 38 N VAL B 31 SHEET 3 E 4 LEU B 58 ASP B 62 -1 O ILE B 61 N LYS B 39 SHEET 4 E 4 LYS B 68 ASP B 71 -1 O TYR B 69 N GLY B 60 SHEET 1 F 4 TYR B 98 LEU B 102 0 SHEET 2 F 4 LYS B 85 GLN B 95 -1 N ILE B 92 O SER B 100 SHEET 3 F 4 LEU B 134 ALA B 140 -1 O VAL B 137 N ASN B 87 SHEET 4 F 4 GLU B 143 LYS B 150 -1 O ALA B 145 N LEU B 138 SSBOND 1 CYS A 22 CYS A 73 1555 1555 2.04 SSBOND 2 CYS A 129 CYS B 129 1555 1555 2.03 SITE 1 AC1 6 LEU A 99 LEU A 101 ARG A 109 GLU A 110 SITE 2 AC1 6 ASP A 111 LEU A 112 SITE 1 AC2 2 ASP A 118 GLU A 122 SITE 1 AC3 2 SER A 139 GLU A 144 CRYST1 76.119 76.119 107.752 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013137 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009281 0.00000