HEADER HYDROLASE 31-MAR-08 3CPM TITLE PLANT PEPTIDE DEFORMYLASE PDF1B CRYSTAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE DEFORMYLASE, CHLOROPLAST; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 65-257; COMPND 5 SYNONYM: PDF, POLYPEPTIDE DEFORMYLASE; COMPND 6 EC: 3.5.1.88; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 GENE: PDF1B; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET23B KEYWDS ALPHA BETA, CHLOROPLAST, HYDROLASE, IRON, METAL-BINDING, PROTEIN KEYWDS 2 BIOSYNTHESIS, TRANSIT PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR D.W.RODGERS,R.L.HOUTZ,L.M.A.DIRK,J.J.SCHMIDT,Y.CAI REVDAT 4 21-FEB-24 3CPM 1 REMARK LINK REVDAT 3 13-JUL-11 3CPM 1 VERSN REVDAT 2 24-FEB-09 3CPM 1 VERSN REVDAT 1 22-JUL-08 3CPM 0 JRNL AUTH L.M.DIRK,J.J.SCHMIDT,Y.CAI,J.C.BARNES,K.M.HANGER,N.R.NAYAK, JRNL AUTH 2 M.A.WILLIAMS,R.B.GROSSMAN,R.L.HOUTZ,D.W.RODGERS JRNL TITL INSIGHTS INTO THE SUBSTRATE SPECIFICITY OF PLANT PEPTIDE JRNL TITL 2 DEFORMYLASE, AN ESSENTIAL ENZYME WITH POTENTIAL FOR THE JRNL TITL 3 DEVELOPMENT OF NOVEL BIOTECHNOLOGY APPLICATIONS IN JRNL TITL 4 AGRICULTURE JRNL REF BIOCHEM.J. V. 413 417 2008 JRNL REFN ISSN 0264-6021 JRNL PMID 18412546 JRNL DOI 10.1042/BJ20071641 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1135949.730 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 8016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.600 REMARK 3 FREE R VALUE TEST SET COUNT : 850 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1168 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 119 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.031 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1478 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.27000 REMARK 3 B22 (A**2) : -1.27000 REMARK 3 B33 (A**2) : 2.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.18 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.34 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.220 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 36.59 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3CPM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047061. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8067 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-18% PEG MONOMETHYL ETHER 550, 28-70 REMARK 280 MM ZNSO4, 70 MM MES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.39150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 25.45100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 25.45100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.19575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 25.45100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 25.45100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.58725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 25.45100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 25.45100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.19575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 25.45100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 25.45100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 108.58725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.39150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -284.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 50.90200 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 50.90200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -72.39150 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 65 REMARK 465 ASP A 66 REMARK 465 ASP A 67 REMARK 465 LYS A 68 REMARK 465 VAL A 69 REMARK 465 ALA A 70 REMARK 465 SER A 71 REMARK 465 ALA A 72 REMARK 465 THR A 73 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 162 O HOH A 317 2.09 REMARK 500 OE1 GLU A 219 O HOH A 316 2.14 REMARK 500 O VAL A 181 NH2 ARG A 209 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 80 127.26 -11.02 REMARK 500 ALA A 93 -1.76 -52.26 REMARK 500 LYS A 94 122.23 72.73 REMARK 500 GLU A 146 36.41 -142.73 REMARK 500 PRO A 175 117.75 -38.25 REMARK 500 ARG A 205 -143.64 53.53 REMARK 500 PRO A 255 47.16 -81.37 REMARK 500 GLU A 256 -157.20 -56.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 79 PRO A 80 -89.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 171 SG REMARK 620 2 HIS A 213 NE2 111.8 REMARK 620 3 HIS A 217 NE2 110.1 106.9 REMARK 620 4 HOH A 293 O 125.5 97.7 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 110 OD1 REMARK 620 2 ASP A 114 OD2 98.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 4 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 74 OD1 REMARK 620 2 ASP A 99 OD2 106.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 5 DBREF 3CPM A 65 257 UNP Q9FUZ2 DEFC_ARATH 65 257 SEQRES 1 A 193 LYS ASP ASP LYS VAL ALA SER ALA THR ASP VAL GLN PHE SEQRES 2 A 193 GLU THR PRO LEU LYS ILE VAL GLU TYR PRO ASP PRO ILE SEQRES 3 A 193 LEU ARG ALA LYS ASN LYS ARG ILE ASP ILE PHE ASP GLU SEQRES 4 A 193 ASN LEU LYS ASN LEU VAL ASP ALA MET PHE ASP VAL MET SEQRES 5 A 193 TYR LYS THR ASP GLY ILE GLY LEU SER ALA PRO GLN VAL SEQRES 6 A 193 GLY LEU ASN VAL GLN LEU MET VAL PHE ASN PRO ALA GLY SEQRES 7 A 193 GLU PRO GLY GLU GLY LYS GLU ILE VAL LEU VAL ASN PRO SEQRES 8 A 193 LYS ILE LYS LYS TYR SER ASP LYS LEU VAL PRO PHE ASP SEQRES 9 A 193 GLU GLY CYS LEU SER PHE PRO GLY ILE TYR ALA GLU VAL SEQRES 10 A 193 VAL ARG PRO GLN SER VAL LYS ILE ASP ALA ARG ASP ILE SEQRES 11 A 193 THR GLY GLU ARG PHE SER ILE SER LEU SER ARG LEU PRO SEQRES 12 A 193 ALA ARG ILE PHE GLN HIS GLU TYR ASP HIS LEU GLU GLY SEQRES 13 A 193 VAL LEU PHE PHE ASP ARG MET THR ASP GLN VAL LEU ASP SEQRES 14 A 193 SER ILE ARG GLU GLU LEU GLU ALA LEU GLU LYS LYS TYR SEQRES 15 A 193 GLU GLU LYS THR GLY LEU PRO SER PRO GLU ARG HET SO4 A 1 5 HET ZN A 2 1 HET ZN A 3 1 HET ZN A 4 1 HET ZN A 5 1 HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION FORMUL 2 SO4 O4 S 2- FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *60(H2 O) HELIX 1 1 ASP A 88 ARG A 92 5 5 HELIX 2 2 ASP A 102 THR A 119 1 18 HELIX 3 3 PRO A 127 GLY A 130 5 4 HELIX 4 4 SER A 204 GLU A 219 1 16 HELIX 5 5 LEU A 222 MET A 227 5 6 HELIX 6 6 THR A 228 SER A 234 1 7 HELIX 7 7 ILE A 235 GLY A 251 1 17 SHEET 1 A 5 GLY A 123 SER A 125 0 SHEET 2 A 5 LEU A 135 PHE A 138 -1 O VAL A 137 N LEU A 124 SHEET 3 A 5 ILE A 150 TYR A 160 -1 O LEU A 152 N MET A 136 SHEET 4 A 5 VAL A 187 ARG A 192 -1 O LYS A 188 N LYS A 159 SHEET 5 A 5 ARG A 198 LEU A 203 -1 O LEU A 203 N VAL A 187 SHEET 1 B 2 LEU A 164 GLU A 169 0 SHEET 2 B 2 ALA A 179 PRO A 184 -1 O VAL A 181 N PHE A 167 LINK ZN ZN A 2 SG CYS A 171 1555 1555 2.37 LINK ZN ZN A 2 NE2 HIS A 213 1555 1555 2.08 LINK ZN ZN A 2 NE2 HIS A 217 1555 1555 1.94 LINK ZN ZN A 2 O HOH A 293 1555 1555 2.19 LINK ZN ZN A 3 OD1 ASP A 110 1555 1555 1.96 LINK ZN ZN A 3 OD2 ASP A 114 1555 1555 2.10 LINK ZN ZN A 4 OD1 ASP A 74 1555 1555 2.38 LINK ZN ZN A 4 OD2 ASP A 99 1555 1555 1.93 LINK ZN ZN A 5 OE1 GLU A 237 1555 1555 2.22 CISPEP 1 TYR A 86 PRO A 87 0 0.43 SITE 1 AC1 6 ARG A 97 ASN A 154 GLY A 176 TYR A 178 SITE 2 AC1 6 ARG A 192 ARG A 198 SITE 1 AC2 5 GLN A 128 CYS A 171 HIS A 213 HIS A 217 SITE 2 AC2 5 HOH A 293 SITE 1 AC3 4 GLU A 103 LYS A 106 ASP A 110 ASP A 114 SITE 1 AC4 3 ASP A 74 ASP A 99 GLU A 238 SITE 1 AC5 3 GLU A 237 GLU A 240 HOH A 272 CRYST1 50.902 50.902 144.783 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019646 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006907 0.00000