HEADER HYDROLASE 02-APR-08 3CQB TITLE CRYSTAL STRUCTURE OF HEAT SHOCK PROTEIN HTPX DOMAIN FROM VIBRIO TITLE 2 PARAHAEMOLYTICUS RIMD 2210633 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE PROTEASE HTPX HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DOMAIN: RESIDUES 58-161; COMPND 5 EC: 3.4.24.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS RIMD 2210633; SOURCE 3 STRAIN: RIMD 2210633 / SEROTYPE O3:K6; SOURCE 4 GENE: HTPX, VP1118; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDM68 KEYWDS HEAT SHOCK PROTEIN HTPX DOMAIN, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 STRUCTURAL GENOMICS, MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG), KEYWDS 3 HYDROLASE, INNER MEMBRANE, MEMBRANE, METAL-BINDING, METALLOPROTEASE, KEYWDS 4 PROTEASE, TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR R.WU,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 (MCSG) REVDAT 3 13-JUL-11 3CQB 1 VERSN REVDAT 2 24-FEB-09 3CQB 1 VERSN REVDAT 1 27-MAY-08 3CQB 0 JRNL AUTH R.WU,S.CLANCY,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF HEAT SHOCK PROTEIN HTPX DOMAIN FROM JRNL TITL 2 VIBRIO PARAHAEMOLYTICUS RIMD 2210633. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 17651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 958 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1264 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.1680 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.2070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1509 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 21.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.219 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1589 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2146 ; 1.475 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 211 ; 6.163 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;37.722 ;25.224 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 267 ;14.439 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.782 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 251 ; 0.277 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1183 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 800 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1114 ; 0.291 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 180 ; 0.203 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 100 ; 0.288 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 56 ; 0.214 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1033 ; 0.923 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1654 ; 1.745 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 567 ; 3.009 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 492 ; 4.714 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 102 REMARK 3 RESIDUE RANGE : B 4 B 104 REMARK 3 ORIGIN FOR THE GROUP (A): 28.2481 -4.6905 -3.7483 REMARK 3 T TENSOR REMARK 3 T11: -0.0434 T22: -0.0305 REMARK 3 T33: -0.0374 T12: -0.0088 REMARK 3 T13: -0.0099 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.0366 L22: 2.2667 REMARK 3 L33: 0.9810 L12: -0.0682 REMARK 3 L13: -0.0331 L23: 1.0902 REMARK 3 S TENSOR REMARK 3 S11: -0.0222 S12: 0.0369 S13: 0.0314 REMARK 3 S21: -0.1987 S22: 0.0018 S23: 0.1267 REMARK 3 S31: -0.1074 S32: -0.0412 S33: 0.0203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-08. REMARK 100 THE RCSB ID CODE IS RCSB047083. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27657 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.600 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : 0.84700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5M NA MALONATE PH 7.0, 0.1M TRIS-HCL REMARK 280 PH 7.0, 0.5% JEFFAMINE ED-2001 PH 7.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.64733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.82367 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.82367 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.64733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 21.82367 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ARG A 60 REMARK 465 ASP A 61 REMARK 465 GLY A 104 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 SER B 1 REMARK 465 LYS B 2 REMARK 465 GLY B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 188 O HOH B 177 5555 1.93 REMARK 500 ND2 ASN A -1 O HOH A 207 3665 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 15 -70.72 -108.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 106 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 50 OD1 REMARK 620 2 HOH A 158 O 89.0 REMARK 620 3 HOH A 200 O 127.0 120.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 105 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 47 OD1 REMARK 620 2 THR B 69 OG1 98.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 108 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC91272.1 RELATED DB: TARGETDB DBREF 3CQB A 1 104 UNP Q87QN1 HTPX_VIBPA 58 161 DBREF 3CQB B 1 104 UNP Q87QN1 HTPX_VIBPA 58 161 SEQADV 3CQB SER A -2 UNP Q87QN1 EXPRESSION TAG SEQADV 3CQB ASN A -1 UNP Q87QN1 EXPRESSION TAG SEQADV 3CQB ALA A 0 UNP Q87QN1 EXPRESSION TAG SEQADV 3CQB SER B -2 UNP Q87QN1 EXPRESSION TAG SEQADV 3CQB ASN B -1 UNP Q87QN1 EXPRESSION TAG SEQADV 3CQB ALA B 0 UNP Q87QN1 EXPRESSION TAG SEQRES 1 A 107 SER ASN ALA SER LYS GLY MSE ALA LEU ARG SER VAL GLY SEQRES 2 A 107 GLY MSE VAL ILE GLU SER PRO ARG ASN GLU THR GLU HIS SEQRES 3 A 107 TRP LEU LEU GLU THR VAL GLY ARG GLN ALA GLN GLN ALA SEQRES 4 A 107 GLY ILE GLY MSE PRO THR VAL ALA ILE TYR ASP SER ALA SEQRES 5 A 107 ASP ILE ASN ALA PHE ALA THR GLY ALA LYS ARG ASP ASP SEQRES 6 A 107 SER LEU VAL ALA VAL SER THR GLY LEU LEU HIS ASN MSE SEQRES 7 A 107 THR ARG ASP GLU ALA GLU ALA VAL LEU ALA HIS GLU VAL SEQRES 8 A 107 SER HIS ILE ALA ASN GLY ASP MSE VAL THR MSE THR LEU SEQRES 9 A 107 MSE GLN GLY SEQRES 1 B 107 SER ASN ALA SER LYS GLY MSE ALA LEU ARG SER VAL GLY SEQRES 2 B 107 GLY MSE VAL ILE GLU SER PRO ARG ASN GLU THR GLU HIS SEQRES 3 B 107 TRP LEU LEU GLU THR VAL GLY ARG GLN ALA GLN GLN ALA SEQRES 4 B 107 GLY ILE GLY MSE PRO THR VAL ALA ILE TYR ASP SER ALA SEQRES 5 B 107 ASP ILE ASN ALA PHE ALA THR GLY ALA LYS ARG ASP ASP SEQRES 6 B 107 SER LEU VAL ALA VAL SER THR GLY LEU LEU HIS ASN MSE SEQRES 7 B 107 THR ARG ASP GLU ALA GLU ALA VAL LEU ALA HIS GLU VAL SEQRES 8 B 107 SER HIS ILE ALA ASN GLY ASP MSE VAL THR MSE THR LEU SEQRES 9 B 107 MSE GLN GLY MODRES 3CQB MSE A 4 MET SELENOMETHIONINE MODRES 3CQB MSE A 12 MET SELENOMETHIONINE MODRES 3CQB MSE A 40 MET SELENOMETHIONINE MODRES 3CQB MSE A 75 MET SELENOMETHIONINE MODRES 3CQB MSE A 96 MET SELENOMETHIONINE MODRES 3CQB MSE A 99 MET SELENOMETHIONINE MODRES 3CQB MSE A 102 MET SELENOMETHIONINE MODRES 3CQB MSE B 4 MET SELENOMETHIONINE MODRES 3CQB MSE B 12 MET SELENOMETHIONINE MODRES 3CQB MSE B 40 MET SELENOMETHIONINE MODRES 3CQB MSE B 75 MET SELENOMETHIONINE MODRES 3CQB MSE B 96 MET SELENOMETHIONINE MODRES 3CQB MSE B 99 MET SELENOMETHIONINE MODRES 3CQB MSE B 102 MET SELENOMETHIONINE HET MSE A 4 8 HET MSE A 12 8 HET MSE A 40 8 HET MSE A 75 8 HET MSE A 96 8 HET MSE A 99 8 HET MSE A 102 8 HET MSE B 4 8 HET MSE B 12 8 HET MSE B 40 8 HET MSE B 75 16 HET MSE B 96 8 HET MSE B 99 8 HET MSE B 102 8 HET CL A 105 1 HET NA A 106 1 HET NA B 105 1 HET EDO A 107 4 HET EDO A 108 4 HET EDO A 109 4 HET EDO B 106 4 HET EDO B 107 4 HET GOL B 108 6 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 CL CL 1- FORMUL 4 NA 2(NA 1+) FORMUL 6 EDO 5(C2 H6 O2) FORMUL 11 GOL C3 H8 O3 FORMUL 12 HOH *194(H2 O) HELIX 1 1 ASN A 19 GLY A 37 1 19 HELIX 2 2 THR A 69 MSE A 75 1 7 HELIX 3 3 THR A 76 ASN A 93 1 18 HELIX 4 4 LEU B 6 GLY B 10 5 5 HELIX 5 5 ASN B 19 GLY B 37 1 19 HELIX 6 6 THR B 69 MSE B 75 1 7 HELIX 7 7 THR B 76 ASN B 93 1 18 SHEET 1 A10 MSE A 12 VAL A 13 0 SHEET 2 A10 THR A 42 TYR A 46 -1 O ILE A 45 N MSE A 12 SHEET 3 A10 LEU A 64 SER A 68 1 O VAL A 65 N THR A 42 SHEET 4 A10 ILE A 51 THR A 56 -1 N PHE A 54 O ALA A 66 SHEET 5 A10 MSE A 96 MSE A 102 -1 O VAL A 97 N ALA A 55 SHEET 6 A10 MSE B 96 MSE B 102 -1 O THR B 100 N THR A 98 SHEET 7 A10 ILE B 51 THR B 56 -1 N ALA B 55 O VAL B 97 SHEET 8 A10 LEU B 64 SER B 68 -1 O ALA B 66 N PHE B 54 SHEET 9 A10 THR B 42 TYR B 46 1 N THR B 42 O VAL B 65 SHEET 10 A10 MSE B 12 VAL B 13 -1 N MSE B 12 O ILE B 45 LINK C GLY A 3 N MSE A 4 1555 1555 1.34 LINK C MSE A 4 N ALA A 5 1555 1555 1.34 LINK C GLY A 11 N MSE A 12 1555 1555 1.33 LINK C MSE A 12 N VAL A 13 1555 1555 1.32 LINK C GLY A 39 N MSE A 40 1555 1555 1.33 LINK C MSE A 40 N PRO A 41 1555 1555 1.34 LINK C ASN A 74 N MSE A 75 1555 1555 1.33 LINK C MSE A 75 N THR A 76 1555 1555 1.33 LINK C ASP A 95 N MSE A 96 1555 1555 1.33 LINK C MSE A 96 N VAL A 97 1555 1555 1.33 LINK C THR A 98 N MSE A 99 1555 1555 1.33 LINK C MSE A 99 N THR A 100 1555 1555 1.33 LINK C LEU A 101 N MSE A 102 1555 1555 1.33 LINK C MSE A 102 N GLN A 103 1555 1555 1.34 LINK C MSE B 4 N ALA B 5 1555 1555 1.34 LINK C GLY B 11 N MSE B 12 1555 1555 1.32 LINK C MSE B 12 N VAL B 13 1555 1555 1.33 LINK C GLY B 39 N MSE B 40 1555 1555 1.33 LINK C MSE B 40 N PRO B 41 1555 1555 1.35 LINK C ASN B 74 N AMSE B 75 1555 1555 1.33 LINK C ASN B 74 N BMSE B 75 1555 1555 1.33 LINK C AMSE B 75 N THR B 76 1555 1555 1.34 LINK C BMSE B 75 N THR B 76 1555 1555 1.34 LINK C ASP B 95 N MSE B 96 1555 1555 1.34 LINK C MSE B 96 N VAL B 97 1555 1555 1.33 LINK C THR B 98 N MSE B 99 1555 1555 1.33 LINK C MSE B 99 N THR B 100 1555 1555 1.33 LINK C LEU B 101 N MSE B 102 1555 1555 1.33 LINK C MSE B 102 N GLN B 103 1555 1555 1.32 LINK OD1 ASP A 50 NA NA A 106 1555 1555 2.42 LINK OD1 ASP B 47 NA NA B 105 1555 1555 2.64 LINK OG1 THR B 69 NA NA B 105 1555 1555 2.85 LINK NA NA A 106 O HOH A 158 1555 1555 2.69 LINK NA NA A 106 O HOH A 200 1555 1555 2.81 SITE 1 AC2 3 ASP A 47 SER A 48 ASP A 50 SITE 1 AC3 4 LYS A 2 HIS A 73 ASP B 47 THR B 69 SITE 1 AC4 1 HIS A 86 SITE 1 AC5 1 HIS B 86 SITE 1 AC6 4 ASN A -1 ALA A 0 SER A 1 ASP B 47 SITE 1 AC7 5 HIS A 73 ASN A 74 THR B 69 LEU B 72 SITE 2 AC7 5 HIS B 73 SITE 1 AC8 8 LYS A 2 HIS A 73 ASN A 74 SER B 48 SITE 2 AC8 8 ALA B 49 THR B 69 GLY B 70 HIS B 73 SITE 1 AC9 4 TRP B 24 LEU B 71 LEU B 72 ARG B 77 CRYST1 75.873 75.873 65.471 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013180 0.007609 0.000000 0.00000 SCALE2 0.000000 0.015219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015274 0.00000