data_3CQV # _entry.id 3CQV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3CQV pdb_00003cqv 10.2210/pdb3cqv/pdb RCSB RCSB047103 ? ? WWPDB D_1000047103 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-05 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_entry_details 5 3 'Structure model' pdbx_modification_feature 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_entry_details.has_protein_modification' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3CQV _pdbx_database_status.recvd_initial_deposition_date 2008-04-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Xu, X.' 1 'Dong, A.' 2 'Pardee, K.I.' 3 'Reinking, J.' 4 'Krause, H.' 5 'Schuetz, A.' 6 'Zhang, R.' 7 'Cui, H.' 8 'Edwards, A.' 9 'Arrowsmith, C.H.' 10 'Weigelt, J.' 11 'Bountra, C.' 12 'Savchenko, A.' 13 'Botchkarev, A.' 14 'Structural Genomics Consortium (SGC)' 15 # _citation.id primary _citation.title 'The structural basis of gas-responsive transcription by the human nuclear hormone receptor REV-ERBbeta.' _citation.journal_abbrev 'Plos Biol.' _citation.journal_volume 7 _citation.page_first e43 _citation.page_last e43 _citation.year 2009 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1544-9173 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19243223 _citation.pdbx_database_id_DOI 10.1371/journal.pbio.1000043 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pardee, K.I.' 1 ? primary 'Xu, X.' 2 ? primary 'Reinking, J.' 3 ? primary 'Schuetz, A.' 4 ? primary 'Dong, A.' 5 ? primary 'Liu, S.' 6 ? primary 'Zhang, R.' 7 ? primary 'Tiefenbach, J.' 8 ? primary 'Lajoie, G.' 9 ? primary 'Plotnikov, A.N.' 10 ? primary 'Botchkarev, A.' 11 ? primary 'Krause, H.M.' 12 ? primary 'Edwards, A.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nuclear receptor subfamily 1 group D member 2' 22870.023 1 ? ? 'UNP residues 381-579, see remarks 200 and 999' ? 2 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 1 ? ? ? ? 3 water nat water 18.015 157 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Rev-erb-beta, EAR-1R, Orphan nuclear hormone receptor BD73' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;HLVCP(MSE)SKSPYVDPHKSGHEIWEEFS(MSE)SFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVL(MSE)V RFASLFDAKERTVTFLSGKKYSVDDLHS(MSE)GAGDLLNS(MSE)FEFSEKLNALQLSDEE(MSE)SLFTAVVLVSADR SGIENVNSVEALQETLIRALRTLI(MSE)KNHPNEASIFTKLLLKLPDLRSLNN(MSE)HSEELLAFKVHP ; _entity_poly.pdbx_seq_one_letter_code_can ;HLVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT VTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLI MKNHPNEASIFTKLLLKLPDLRSLNNMHSEELLAFKVHP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PROTOPORPHYRIN IX CONTAINING FE' HEM 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 LEU n 1 3 VAL n 1 4 CYS n 1 5 PRO n 1 6 MSE n 1 7 SER n 1 8 LYS n 1 9 SER n 1 10 PRO n 1 11 TYR n 1 12 VAL n 1 13 ASP n 1 14 PRO n 1 15 HIS n 1 16 LYS n 1 17 SER n 1 18 GLY n 1 19 HIS n 1 20 GLU n 1 21 ILE n 1 22 TRP n 1 23 GLU n 1 24 GLU n 1 25 PHE n 1 26 SER n 1 27 MSE n 1 28 SER n 1 29 PHE n 1 30 THR n 1 31 PRO n 1 32 ALA n 1 33 VAL n 1 34 LYS n 1 35 GLU n 1 36 VAL n 1 37 VAL n 1 38 GLU n 1 39 PHE n 1 40 ALA n 1 41 LYS n 1 42 ARG n 1 43 ILE n 1 44 PRO n 1 45 GLY n 1 46 PHE n 1 47 ARG n 1 48 ASP n 1 49 LEU n 1 50 SER n 1 51 GLN n 1 52 HIS n 1 53 ASP n 1 54 GLN n 1 55 VAL n 1 56 ASN n 1 57 LEU n 1 58 LEU n 1 59 LYS n 1 60 ALA n 1 61 GLY n 1 62 THR n 1 63 PHE n 1 64 GLU n 1 65 VAL n 1 66 LEU n 1 67 MSE n 1 68 VAL n 1 69 ARG n 1 70 PHE n 1 71 ALA n 1 72 SER n 1 73 LEU n 1 74 PHE n 1 75 ASP n 1 76 ALA n 1 77 LYS n 1 78 GLU n 1 79 ARG n 1 80 THR n 1 81 VAL n 1 82 THR n 1 83 PHE n 1 84 LEU n 1 85 SER n 1 86 GLY n 1 87 LYS n 1 88 LYS n 1 89 TYR n 1 90 SER n 1 91 VAL n 1 92 ASP n 1 93 ASP n 1 94 LEU n 1 95 HIS n 1 96 SER n 1 97 MSE n 1 98 GLY n 1 99 ALA n 1 100 GLY n 1 101 ASP n 1 102 LEU n 1 103 LEU n 1 104 ASN n 1 105 SER n 1 106 MSE n 1 107 PHE n 1 108 GLU n 1 109 PHE n 1 110 SER n 1 111 GLU n 1 112 LYS n 1 113 LEU n 1 114 ASN n 1 115 ALA n 1 116 LEU n 1 117 GLN n 1 118 LEU n 1 119 SER n 1 120 ASP n 1 121 GLU n 1 122 GLU n 1 123 MSE n 1 124 SER n 1 125 LEU n 1 126 PHE n 1 127 THR n 1 128 ALA n 1 129 VAL n 1 130 VAL n 1 131 LEU n 1 132 VAL n 1 133 SER n 1 134 ALA n 1 135 ASP n 1 136 ARG n 1 137 SER n 1 138 GLY n 1 139 ILE n 1 140 GLU n 1 141 ASN n 1 142 VAL n 1 143 ASN n 1 144 SER n 1 145 VAL n 1 146 GLU n 1 147 ALA n 1 148 LEU n 1 149 GLN n 1 150 GLU n 1 151 THR n 1 152 LEU n 1 153 ILE n 1 154 ARG n 1 155 ALA n 1 156 LEU n 1 157 ARG n 1 158 THR n 1 159 LEU n 1 160 ILE n 1 161 MSE n 1 162 LYS n 1 163 ASN n 1 164 HIS n 1 165 PRO n 1 166 ASN n 1 167 GLU n 1 168 ALA n 1 169 SER n 1 170 ILE n 1 171 PHE n 1 172 THR n 1 173 LYS n 1 174 LEU n 1 175 LEU n 1 176 LEU n 1 177 LYS n 1 178 LEU n 1 179 PRO n 1 180 ASP n 1 181 LEU n 1 182 ARG n 1 183 SER n 1 184 LEU n 1 185 ASN n 1 186 ASN n 1 187 MSE n 1 188 HIS n 1 189 SER n 1 190 GLU n 1 191 GLU n 1 192 LEU n 1 193 LEU n 1 194 ALA n 1 195 PHE n 1 196 LYS n 1 197 VAL n 1 198 HIS n 1 199 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene NR1D2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 pLysE' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 381 381 HIS HIS A . n A 1 2 LEU 2 382 382 LEU LEU A . n A 1 3 VAL 3 383 383 VAL VAL A . n A 1 4 CYS 4 384 384 CYS CYS A . n A 1 5 PRO 5 385 385 PRO PRO A . n A 1 6 MSE 6 386 386 MSE MSE A . n A 1 7 SER 7 387 387 SER SER A . n A 1 8 LYS 8 388 388 LYS LYS A . n A 1 9 SER 9 389 389 SER SER A . n A 1 10 PRO 10 390 390 PRO PRO A . n A 1 11 TYR 11 391 391 TYR TYR A . n A 1 12 VAL 12 392 392 VAL VAL A . n A 1 13 ASP 13 393 393 ASP ASP A . n A 1 14 PRO 14 394 394 PRO PRO A . n A 1 15 HIS 15 395 395 HIS HIS A . n A 1 16 LYS 16 396 396 LYS LYS A . n A 1 17 SER 17 397 397 SER SER A . n A 1 18 GLY 18 398 398 GLY GLY A . n A 1 19 HIS 19 399 399 HIS HIS A . n A 1 20 GLU 20 400 400 GLU GLU A . n A 1 21 ILE 21 401 401 ILE ILE A . n A 1 22 TRP 22 402 402 TRP TRP A . n A 1 23 GLU 23 403 403 GLU GLU A . n A 1 24 GLU 24 404 404 GLU GLU A . n A 1 25 PHE 25 405 405 PHE PHE A . n A 1 26 SER 26 406 406 SER SER A . n A 1 27 MSE 27 407 407 MSE MSE A . n A 1 28 SER 28 408 408 SER SER A . n A 1 29 PHE 29 409 409 PHE PHE A . n A 1 30 THR 30 410 410 THR THR A . n A 1 31 PRO 31 411 411 PRO PRO A . n A 1 32 ALA 32 412 412 ALA ALA A . n A 1 33 VAL 33 413 413 VAL VAL A . n A 1 34 LYS 34 414 414 LYS LYS A . n A 1 35 GLU 35 415 415 GLU GLU A . n A 1 36 VAL 36 416 416 VAL VAL A . n A 1 37 VAL 37 417 417 VAL VAL A . n A 1 38 GLU 38 418 418 GLU GLU A . n A 1 39 PHE 39 419 419 PHE PHE A . n A 1 40 ALA 40 420 420 ALA ALA A . n A 1 41 LYS 41 421 421 LYS LYS A . n A 1 42 ARG 42 422 422 ARG ARG A . n A 1 43 ILE 43 423 423 ILE ILE A . n A 1 44 PRO 44 424 424 PRO PRO A . n A 1 45 GLY 45 425 425 GLY GLY A . n A 1 46 PHE 46 426 426 PHE PHE A . n A 1 47 ARG 47 427 427 ARG ARG A . n A 1 48 ASP 48 428 428 ASP ASP A . n A 1 49 LEU 49 429 429 LEU LEU A . n A 1 50 SER 50 430 430 SER SER A . n A 1 51 GLN 51 431 431 GLN GLN A . n A 1 52 HIS 52 432 432 HIS HIS A . n A 1 53 ASP 53 433 433 ASP ASP A . n A 1 54 GLN 54 434 434 GLN GLN A . n A 1 55 VAL 55 435 435 VAL VAL A . n A 1 56 ASN 56 436 436 ASN ASN A . n A 1 57 LEU 57 437 437 LEU LEU A . n A 1 58 LEU 58 438 438 LEU LEU A . n A 1 59 LYS 59 439 439 LYS LYS A . n A 1 60 ALA 60 440 440 ALA ALA A . n A 1 61 GLY 61 441 441 GLY GLY A . n A 1 62 THR 62 442 442 THR THR A . n A 1 63 PHE 63 443 443 PHE PHE A . n A 1 64 GLU 64 444 444 GLU GLU A . n A 1 65 VAL 65 445 445 VAL VAL A . n A 1 66 LEU 66 446 446 LEU LEU A . n A 1 67 MSE 67 447 447 MSE MSE A . n A 1 68 VAL 68 448 448 VAL VAL A . n A 1 69 ARG 69 449 449 ARG ARG A . n A 1 70 PHE 70 450 450 PHE PHE A . n A 1 71 ALA 71 451 451 ALA ALA A . n A 1 72 SER 72 452 452 SER SER A . n A 1 73 LEU 73 453 453 LEU LEU A . n A 1 74 PHE 74 454 454 PHE PHE A . n A 1 75 ASP 75 455 455 ASP ASP A . n A 1 76 ALA 76 456 456 ALA ALA A . n A 1 77 LYS 77 457 457 LYS LYS A . n A 1 78 GLU 78 458 458 GLU GLU A . n A 1 79 ARG 79 459 459 ARG ARG A . n A 1 80 THR 80 460 460 THR THR A . n A 1 81 VAL 81 461 461 VAL VAL A . n A 1 82 THR 82 462 462 THR THR A . n A 1 83 PHE 83 463 463 PHE PHE A . n A 1 84 LEU 84 464 464 LEU LEU A . n A 1 85 SER 85 465 465 SER SER A . n A 1 86 GLY 86 466 466 GLY GLY A . n A 1 87 LYS 87 467 467 LYS LYS A . n A 1 88 LYS 88 468 468 LYS LYS A . n A 1 89 TYR 89 469 469 TYR TYR A . n A 1 90 SER 90 470 470 SER SER A . n A 1 91 VAL 91 471 471 VAL VAL A . n A 1 92 ASP 92 472 472 ASP ASP A . n A 1 93 ASP 93 473 473 ASP ASP A . n A 1 94 LEU 94 474 474 LEU LEU A . n A 1 95 HIS 95 475 475 HIS HIS A . n A 1 96 SER 96 476 476 SER SER A . n A 1 97 MSE 97 477 477 MSE MSE A . n A 1 98 GLY 98 478 478 GLY GLY A . n A 1 99 ALA 99 479 479 ALA ALA A . n A 1 100 GLY 100 480 480 GLY GLY A . n A 1 101 ASP 101 481 481 ASP ASP A . n A 1 102 LEU 102 482 482 LEU LEU A . n A 1 103 LEU 103 483 483 LEU LEU A . n A 1 104 ASN 104 484 484 ASN ASN A . n A 1 105 SER 105 485 485 SER SER A . n A 1 106 MSE 106 486 486 MSE MSE A . n A 1 107 PHE 107 487 487 PHE PHE A . n A 1 108 GLU 108 488 488 GLU GLU A . n A 1 109 PHE 109 489 489 PHE PHE A . n A 1 110 SER 110 490 490 SER SER A . n A 1 111 GLU 111 491 491 GLU GLU A . n A 1 112 LYS 112 492 492 LYS LYS A . n A 1 113 LEU 113 493 493 LEU LEU A . n A 1 114 ASN 114 494 494 ASN ASN A . n A 1 115 ALA 115 495 495 ALA ALA A . n A 1 116 LEU 116 496 496 LEU LEU A . n A 1 117 GLN 117 497 497 GLN GLN A . n A 1 118 LEU 118 498 498 LEU LEU A . n A 1 119 SER 119 499 499 SER SER A . n A 1 120 ASP 120 500 500 ASP ASP A . n A 1 121 GLU 121 501 501 GLU GLU A . n A 1 122 GLU 122 502 502 GLU GLU A . n A 1 123 MSE 123 503 503 MSE MSE A . n A 1 124 SER 124 504 504 SER SER A . n A 1 125 LEU 125 505 505 LEU LEU A . n A 1 126 PHE 126 506 506 PHE PHE A . n A 1 127 THR 127 507 507 THR THR A . n A 1 128 ALA 128 508 508 ALA ALA A . n A 1 129 VAL 129 509 509 VAL VAL A . n A 1 130 VAL 130 510 510 VAL VAL A . n A 1 131 LEU 131 511 511 LEU LEU A . n A 1 132 VAL 132 512 512 VAL VAL A . n A 1 133 SER 133 513 513 SER SER A . n A 1 134 ALA 134 514 514 ALA ALA A . n A 1 135 ASP 135 515 515 ASP ASP A . n A 1 136 ARG 136 516 516 ARG ARG A . n A 1 137 SER 137 517 517 SER SER A . n A 1 138 GLY 138 518 518 GLY GLY A . n A 1 139 ILE 139 519 519 ILE ILE A . n A 1 140 GLU 140 520 520 GLU GLU A . n A 1 141 ASN 141 521 521 ASN ASN A . n A 1 142 VAL 142 522 522 VAL VAL A . n A 1 143 ASN 143 523 523 ASN ASN A . n A 1 144 SER 144 524 524 SER SER A . n A 1 145 VAL 145 525 525 VAL VAL A . n A 1 146 GLU 146 526 526 GLU GLU A . n A 1 147 ALA 147 527 527 ALA ALA A . n A 1 148 LEU 148 528 528 LEU LEU A . n A 1 149 GLN 149 529 529 GLN GLN A . n A 1 150 GLU 150 530 530 GLU GLU A . n A 1 151 THR 151 531 531 THR THR A . n A 1 152 LEU 152 532 532 LEU LEU A . n A 1 153 ILE 153 533 533 ILE ILE A . n A 1 154 ARG 154 534 534 ARG ARG A . n A 1 155 ALA 155 535 535 ALA ALA A . n A 1 156 LEU 156 536 536 LEU LEU A . n A 1 157 ARG 157 537 537 ARG ARG A . n A 1 158 THR 158 538 538 THR THR A . n A 1 159 LEU 159 539 539 LEU LEU A . n A 1 160 ILE 160 540 540 ILE ILE A . n A 1 161 MSE 161 541 541 MSE MSE A . n A 1 162 LYS 162 542 542 LYS LYS A . n A 1 163 ASN 163 543 543 ASN ASN A . n A 1 164 HIS 164 544 544 HIS HIS A . n A 1 165 PRO 165 545 545 PRO PRO A . n A 1 166 ASN 166 546 546 ASN ASN A . n A 1 167 GLU 167 547 547 GLU GLU A . n A 1 168 ALA 168 548 548 ALA ALA A . n A 1 169 SER 169 549 549 SER SER A . n A 1 170 ILE 170 550 550 ILE ILE A . n A 1 171 PHE 171 551 551 PHE PHE A . n A 1 172 THR 172 552 552 THR THR A . n A 1 173 LYS 173 553 553 LYS LYS A . n A 1 174 LEU 174 554 554 LEU LEU A . n A 1 175 LEU 175 555 555 LEU LEU A . n A 1 176 LEU 176 556 556 LEU LEU A . n A 1 177 LYS 177 557 557 LYS LYS A . n A 1 178 LEU 178 558 558 LEU LEU A . n A 1 179 PRO 179 559 559 PRO PRO A . n A 1 180 ASP 180 560 560 ASP ASP A . n A 1 181 LEU 181 561 561 LEU LEU A . n A 1 182 ARG 182 562 562 ARG ARG A . n A 1 183 SER 183 563 563 SER SER A . n A 1 184 LEU 184 564 564 LEU LEU A . n A 1 185 ASN 185 565 565 ASN ASN A . n A 1 186 ASN 186 566 566 ASN ASN A . n A 1 187 MSE 187 567 567 MSE MSE A . n A 1 188 HIS 188 568 568 HIS HIS A . n A 1 189 SER 189 569 569 SER SER A . n A 1 190 GLU 190 570 570 GLU GLU A . n A 1 191 GLU 191 571 571 GLU GLU A . n A 1 192 LEU 192 572 572 LEU LEU A . n A 1 193 LEU 193 573 573 LEU LEU A . n A 1 194 ALA 194 574 574 ALA ALA A . n A 1 195 PHE 195 575 575 PHE PHE A . n A 1 196 LYS 196 576 576 LYS LYS A . n A 1 197 VAL 197 577 ? ? ? A . n A 1 198 HIS 198 578 ? ? ? A . n A 1 199 PRO 199 579 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM 1 601 601 HEM HEM A . C 3 HOH 1 701 1 HOH HOH A . C 3 HOH 2 702 2 HOH HOH A . C 3 HOH 3 703 3 HOH HOH A . C 3 HOH 4 704 4 HOH HOH A . C 3 HOH 5 705 5 HOH HOH A . C 3 HOH 6 706 6 HOH HOH A . C 3 HOH 7 707 7 HOH HOH A . C 3 HOH 8 708 8 HOH HOH A . C 3 HOH 9 709 9 HOH HOH A . C 3 HOH 10 710 10 HOH HOH A . C 3 HOH 11 711 11 HOH HOH A . C 3 HOH 12 712 12 HOH HOH A . C 3 HOH 13 713 13 HOH HOH A . C 3 HOH 14 714 14 HOH HOH A . C 3 HOH 15 715 15 HOH HOH A . C 3 HOH 16 716 16 HOH HOH A . C 3 HOH 17 717 17 HOH HOH A . C 3 HOH 18 718 18 HOH HOH A . C 3 HOH 19 719 19 HOH HOH A . C 3 HOH 20 720 20 HOH HOH A . C 3 HOH 21 722 22 HOH HOH A . C 3 HOH 22 723 23 HOH HOH A . C 3 HOH 23 724 24 HOH HOH A . C 3 HOH 24 725 25 HOH HOH A . C 3 HOH 25 726 26 HOH HOH A . C 3 HOH 26 727 27 HOH HOH A . C 3 HOH 27 728 28 HOH HOH A . C 3 HOH 28 729 29 HOH HOH A . C 3 HOH 29 730 30 HOH HOH A . C 3 HOH 30 731 31 HOH HOH A . C 3 HOH 31 732 32 HOH HOH A . C 3 HOH 32 733 33 HOH HOH A . C 3 HOH 33 734 34 HOH HOH A . C 3 HOH 34 735 35 HOH HOH A . C 3 HOH 35 736 36 HOH HOH A . C 3 HOH 36 737 37 HOH HOH A . C 3 HOH 37 738 38 HOH HOH A . C 3 HOH 38 739 39 HOH HOH A . C 3 HOH 39 740 40 HOH HOH A . C 3 HOH 40 741 41 HOH HOH A . C 3 HOH 41 744 44 HOH HOH A . C 3 HOH 42 745 45 HOH HOH A . C 3 HOH 43 746 46 HOH HOH A . C 3 HOH 44 748 48 HOH HOH A . C 3 HOH 45 749 49 HOH HOH A . C 3 HOH 46 750 50 HOH HOH A . C 3 HOH 47 752 52 HOH HOH A . C 3 HOH 48 755 55 HOH HOH A . C 3 HOH 49 757 57 HOH HOH A . C 3 HOH 50 758 58 HOH HOH A . C 3 HOH 51 760 60 HOH HOH A . C 3 HOH 52 761 61 HOH HOH A . C 3 HOH 53 762 62 HOH HOH A . C 3 HOH 54 764 64 HOH HOH A . C 3 HOH 55 765 65 HOH HOH A . C 3 HOH 56 766 66 HOH HOH A . C 3 HOH 57 767 67 HOH HOH A . C 3 HOH 58 768 68 HOH HOH A . C 3 HOH 59 769 69 HOH HOH A . C 3 HOH 60 770 70 HOH HOH A . C 3 HOH 61 771 71 HOH HOH A . C 3 HOH 62 772 72 HOH HOH A . C 3 HOH 63 773 73 HOH HOH A . C 3 HOH 64 776 76 HOH HOH A . C 3 HOH 65 777 77 HOH HOH A . C 3 HOH 66 778 78 HOH HOH A . C 3 HOH 67 780 80 HOH HOH A . C 3 HOH 68 781 81 HOH HOH A . C 3 HOH 69 782 82 HOH HOH A . C 3 HOH 70 783 83 HOH HOH A . C 3 HOH 71 784 84 HOH HOH A . C 3 HOH 72 785 85 HOH HOH A . C 3 HOH 73 786 86 HOH HOH A . C 3 HOH 74 788 88 HOH HOH A . C 3 HOH 75 789 89 HOH HOH A . C 3 HOH 76 790 90 HOH HOH A . C 3 HOH 77 792 92 HOH HOH A . C 3 HOH 78 793 93 HOH HOH A . C 3 HOH 79 794 94 HOH HOH A . C 3 HOH 80 795 95 HOH HOH A . C 3 HOH 81 796 96 HOH HOH A . C 3 HOH 82 798 98 HOH HOH A . C 3 HOH 83 799 99 HOH HOH A . C 3 HOH 84 800 100 HOH HOH A . C 3 HOH 85 801 101 HOH HOH A . C 3 HOH 86 802 102 HOH HOH A . C 3 HOH 87 804 104 HOH HOH A . C 3 HOH 88 805 105 HOH HOH A . C 3 HOH 89 808 108 HOH HOH A . C 3 HOH 90 809 109 HOH HOH A . C 3 HOH 91 813 113 HOH HOH A . C 3 HOH 92 814 114 HOH HOH A . C 3 HOH 93 815 115 HOH HOH A . C 3 HOH 94 816 116 HOH HOH A . C 3 HOH 95 817 117 HOH HOH A . C 3 HOH 96 818 118 HOH HOH A . C 3 HOH 97 819 119 HOH HOH A . C 3 HOH 98 820 120 HOH HOH A . C 3 HOH 99 823 123 HOH HOH A . C 3 HOH 100 824 124 HOH HOH A . C 3 HOH 101 827 127 HOH HOH A . C 3 HOH 102 828 128 HOH HOH A . C 3 HOH 103 829 129 HOH HOH A . C 3 HOH 104 830 130 HOH HOH A . C 3 HOH 105 831 131 HOH HOH A . C 3 HOH 106 832 132 HOH HOH A . C 3 HOH 107 834 134 HOH HOH A . C 3 HOH 108 835 135 HOH HOH A . C 3 HOH 109 837 137 HOH HOH A . C 3 HOH 110 838 138 HOH HOH A . C 3 HOH 111 839 139 HOH HOH A . C 3 HOH 112 840 140 HOH HOH A . C 3 HOH 113 841 141 HOH HOH A . C 3 HOH 114 843 143 HOH HOH A . C 3 HOH 115 846 146 HOH HOH A . C 3 HOH 116 847 147 HOH HOH A . C 3 HOH 117 848 148 HOH HOH A . C 3 HOH 118 850 150 HOH HOH A . C 3 HOH 119 851 151 HOH HOH A . C 3 HOH 120 854 154 HOH HOH A . C 3 HOH 121 856 156 HOH HOH A . C 3 HOH 122 857 157 HOH HOH A . C 3 HOH 123 859 159 HOH HOH A . C 3 HOH 124 862 162 HOH HOH A . C 3 HOH 125 865 165 HOH HOH A . C 3 HOH 126 866 166 HOH HOH A . C 3 HOH 127 867 167 HOH HOH A . C 3 HOH 128 869 169 HOH HOH A . C 3 HOH 129 870 170 HOH HOH A . C 3 HOH 130 871 171 HOH HOH A . C 3 HOH 131 872 172 HOH HOH A . C 3 HOH 132 874 174 HOH HOH A . C 3 HOH 133 876 176 HOH HOH A . C 3 HOH 134 878 178 HOH HOH A . C 3 HOH 135 879 179 HOH HOH A . C 3 HOH 136 881 181 HOH HOH A . C 3 HOH 137 882 182 HOH HOH A . C 3 HOH 138 883 183 HOH HOH A . C 3 HOH 139 884 184 HOH HOH A . C 3 HOH 140 886 186 HOH HOH A . C 3 HOH 141 887 187 HOH HOH A . C 3 HOH 142 888 188 HOH HOH A . C 3 HOH 143 889 189 HOH HOH A . C 3 HOH 144 890 190 HOH HOH A . C 3 HOH 145 891 191 HOH HOH A . C 3 HOH 146 892 192 HOH HOH A . C 3 HOH 147 898 198 HOH HOH A . C 3 HOH 148 899 199 HOH HOH A . C 3 HOH 149 900 200 HOH HOH A . C 3 HOH 150 901 201 HOH HOH A . C 3 HOH 151 903 203 HOH HOH A . C 3 HOH 152 905 205 HOH HOH A . C 3 HOH 153 907 207 HOH HOH A . C 3 HOH 154 908 208 HOH HOH A . C 3 HOH 155 909 209 HOH HOH A . C 3 HOH 156 911 211 HOH HOH A . C 3 HOH 157 912 212 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 388 ? CD ? A LYS 8 CD 2 1 Y 1 A LYS 388 ? CE ? A LYS 8 CE 3 1 Y 1 A LYS 388 ? NZ ? A LYS 8 NZ 4 1 Y 1 A GLU 404 ? CD ? A GLU 24 CD 5 1 Y 1 A GLU 404 ? OE1 ? A GLU 24 OE1 6 1 Y 1 A GLU 404 ? OE2 ? A GLU 24 OE2 7 1 Y 1 A LYS 439 ? CE ? A LYS 59 CE 8 1 Y 1 A LYS 439 ? NZ ? A LYS 59 NZ 9 1 Y 1 A LYS 467 ? CE ? A LYS 87 CE 10 1 Y 1 A LYS 467 ? NZ ? A LYS 87 NZ 11 1 Y 0 A ASN 566 ? ND2 A A ASN 186 ND2 12 1 Y 1 A LYS 576 ? CG ? A LYS 196 CG 13 1 Y 1 A LYS 576 ? CD ? A LYS 196 CD 14 1 Y 1 A LYS 576 ? CE ? A LYS 196 CE 15 1 Y 1 A LYS 576 ? NZ ? A LYS 196 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-3000 'data collection' . ? 2 HKL-3000 'data reduction' . ? 3 HKL-3000 'data scaling' . ? 4 SOLVE phasing . ? 5 # _cell.entry_id 3CQV _cell.length_a 73.428 _cell.length_b 48.623 _cell.length_c 68.954 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3CQV _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3CQV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.69 _exptl_crystal.density_percent_sol 54.29 _exptl_crystal.description ;THE CRYSTAL WAS OBTAINED BY IN SITU PROTEOLYSIS. PROTEIN SAMPLE WAS MIXED WITH 1:2000 (W/W, PROTEASE TO PROTEIN) RATIO WITH TRYPSIN DURING CONCENTRATION. THE MATTHEWS COEFFICIENT CALCULATED BASED ON THE CONSTRUCTED SEQUENCE IS 1.94, AND SOLVENT CONTENT 36.7%. THE VALUES SHOWN IN FILE ARE CALCULATED BASED ON THE SEQUENCE STARTING FROM THE FIRST VISIBLE N-TERMINAL RESIDUE IN ELECTRON DENSITY, THEREFORE THEY MAY NOT BE ACCURATE. ; _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.6 _exptl_crystal_grow.pdbx_details '1.6 M Ammonium sulfate, 0.1 M Na Hepes pH 7.6, 4% Jeffamine M-600, VAPOR DIFFUSION, temperature 297K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-03-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9794 # _reflns.entry_id 3CQV _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 50.0 _reflns.number_all 20061 _reflns.number_obs 20061 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.090 _reflns.pdbx_Rsym_value 0.090 _reflns.pdbx_netI_over_sigmaI 11.1 _reflns.B_iso_Wilson_estimate 22.4 _reflns.pdbx_redundancy 9.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.93 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.453 _reflns_shell.pdbx_Rsym_value 0.453 _reflns_shell.meanI_over_sigI_obs 5.46 _reflns_shell.pdbx_redundancy 9.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 986 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3CQV _refine.ls_number_reflns_obs 19007 _refine.ls_number_reflns_all 19007 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.56 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 99.57 _refine.ls_R_factor_obs 0.19899 _refine.ls_R_factor_all 0.19899 _refine.ls_R_factor_R_work 0.19704 _refine.ls_R_factor_R_free 0.23541 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1020 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.920 _refine.B_iso_mean 25.471 _refine.aniso_B[1][1] 0.15 _refine.aniso_B[2][2] -0.30 _refine.aniso_B[3][3] 0.16 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. Program COOT 0.3.3 has also been used in refinement' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.147 _refine.pdbx_overall_ESU_R_Free 0.139 _refine.overall_SU_ML 0.083 _refine.overall_SU_B 2.679 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1571 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.number_atoms_solvent 157 _refine_hist.number_atoms_total 1771 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 40.56 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 1654 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.426 2.047 ? 2254 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.730 5.000 ? 203 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.759 24.429 ? 70 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.663 15.000 ? 290 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11.069 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.099 0.200 ? 250 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1239 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.208 0.200 ? 838 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.305 0.200 ? 1162 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.173 0.200 ? 111 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.220 0.200 ? 37 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.253 0.200 ? 14 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.596 1.500 ? 1027 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.840 2.000 ? 1625 'X-RAY DIFFRACTION' ? r_scbond_it 3.337 3.000 ? 695 'X-RAY DIFFRACTION' ? r_scangle_it 5.029 4.500 ? 627 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.95 _refine_ls_shell.number_reflns_R_work 1391 _refine_ls_shell.R_factor_R_work 0.205 _refine_ls_shell.percent_reflns_obs 99.93 _refine_ls_shell.R_factor_R_free 0.259 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 72 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3CQV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3CQV _struct.title 'Crystal structure of Reverb beta in complex with heme' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3CQV _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;Reverb beta, heme, NR1D2, nuclear receptor, DNA-binding, Metal-binding, Nucleus, Repressor, Transcription, Transcription regulation, Zinc, Zinc-finger, Structural Genomics, Structural Genomics Consortium, SGC ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NR1D2_HUMAN _struct_ref.pdbx_db_accession Q14995 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;HLVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT VTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLI MKNHPNEASIFTKLLLKLPDLRSLNNMHSEELLAFKVHP ; _struct_ref.pdbx_align_begin 381 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3CQV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 199 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q14995 _struct_ref_seq.db_align_beg 381 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 579 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 381 _struct_ref_seq.pdbx_auth_seq_align_end 579 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 17 ? ARG A 42 ? SER A 397 ARG A 422 1 ? 26 HELX_P HELX_P2 2 ILE A 43 ? LEU A 49 ? ILE A 423 LEU A 429 5 ? 7 HELX_P HELX_P3 3 SER A 50 ? PHE A 70 ? SER A 430 PHE A 450 1 ? 21 HELX_P HELX_P4 4 VAL A 91 ? MSE A 97 ? VAL A 471 MSE A 477 1 ? 7 HELX_P HELX_P5 5 GLY A 100 ? ALA A 115 ? GLY A 480 ALA A 495 1 ? 16 HELX_P HELX_P6 6 SER A 119 ? SER A 133 ? SER A 499 SER A 513 1 ? 15 HELX_P HELX_P7 7 ASN A 141 ? HIS A 164 ? ASN A 521 HIS A 544 1 ? 24 HELX_P HELX_P8 8 ALA A 168 ? ALA A 194 ? ALA A 548 ALA A 574 1 ? 27 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PRO 5 C ? ? ? 1_555 A MSE 6 N ? ? A PRO 385 A MSE 386 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 6 C ? ? ? 1_555 A SER 7 N ? ? A MSE 386 A SER 387 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale3 covale both ? A SER 26 C ? ? ? 1_555 A MSE 27 N ? ? A SER 406 A MSE 407 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale4 covale both ? A MSE 27 C ? ? ? 1_555 A SER 28 N ? ? A MSE 407 A SER 408 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale5 covale both ? A LEU 66 C ? ? ? 1_555 A MSE 67 N ? ? A LEU 446 A MSE 447 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? A MSE 67 C ? ? ? 1_555 A VAL 68 N ? ? A MSE 447 A VAL 448 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale7 covale both ? A SER 96 C ? ? ? 1_555 A MSE 97 N ? ? A SER 476 A MSE 477 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale8 covale both ? A MSE 97 C ? ? ? 1_555 A GLY 98 N ? ? A MSE 477 A GLY 478 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale9 covale both ? A SER 105 C ? ? ? 1_555 A MSE 106 N ? ? A SER 485 A MSE 486 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale10 covale both ? A MSE 106 C ? ? ? 1_555 A PHE 107 N ? ? A MSE 486 A PHE 487 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale11 covale both ? A GLU 122 C ? ? ? 1_555 A MSE 123 N ? ? A GLU 502 A MSE 503 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale12 covale both ? A MSE 123 C ? ? ? 1_555 A SER 124 N ? ? A MSE 503 A SER 504 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale13 covale both ? A ILE 160 C ? ? ? 1_555 A MSE 161 N ? ? A ILE 540 A MSE 541 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale14 covale both ? A MSE 161 C ? ? ? 1_555 A LYS 162 N A ? A MSE 541 A LYS 542 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale15 covale both ? A MSE 161 C ? ? ? 1_555 A LYS 162 N B ? A MSE 541 A LYS 542 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale16 covale both ? A ASN 186 C A ? ? 1_555 A MSE 187 N ? ? A ASN 566 A MSE 567 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale17 covale both ? A ASN 186 C B ? ? 1_555 A MSE 187 N ? ? A ASN 566 A MSE 567 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale18 covale both ? A MSE 187 C ? ? ? 1_555 A HIS 188 N ? ? A MSE 567 A HIS 568 1_555 ? ? ? ? ? ? ? 1.320 ? ? metalc1 metalc ? ? A CYS 4 SG ? ? ? 1_555 B HEM . FE ? ? A CYS 384 A HEM 601 1_555 ? ? ? ? ? ? ? 2.337 ? ? metalc2 metalc ? ? A HIS 188 NE2 ? ? ? 1_555 B HEM . FE ? ? A HIS 568 A HEM 601 1_555 ? ? ? ? ? ? ? 2.161 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 4 ? A CYS 384 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NA ? B HEM . ? A HEM 601 ? 1_555 94.7 ? 2 SG ? A CYS 4 ? A CYS 384 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NB ? B HEM . ? A HEM 601 ? 1_555 87.2 ? 3 NA ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NB ? B HEM . ? A HEM 601 ? 1_555 90.8 ? 4 SG ? A CYS 4 ? A CYS 384 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NC ? B HEM . ? A HEM 601 ? 1_555 86.0 ? 5 NA ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NC ? B HEM . ? A HEM 601 ? 1_555 178.1 ? 6 NB ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NC ? B HEM . ? A HEM 601 ? 1_555 87.5 ? 7 SG ? A CYS 4 ? A CYS 384 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 ND ? B HEM . ? A HEM 601 ? 1_555 94.1 ? 8 NA ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 ND ? B HEM . ? A HEM 601 ? 1_555 88.2 ? 9 NB ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 ND ? B HEM . ? A HEM 601 ? 1_555 178.5 ? 10 NC ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 ND ? B HEM . ? A HEM 601 ? 1_555 93.5 ? 11 SG ? A CYS 4 ? A CYS 384 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NE2 ? A HIS 188 ? A HIS 568 ? 1_555 172.5 ? 12 NA ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NE2 ? A HIS 188 ? A HIS 568 ? 1_555 88.6 ? 13 NB ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NE2 ? A HIS 188 ? A HIS 568 ? 1_555 86.0 ? 14 NC ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NE2 ? A HIS 188 ? A HIS 568 ? 1_555 90.5 ? 15 ND ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NE2 ? A HIS 188 ? A HIS 568 ? 1_555 92.8 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 6 ? . . . . MSE A 386 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 27 ? . . . . MSE A 407 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 67 ? . . . . MSE A 447 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE A 97 ? . . . . MSE A 477 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 5 MSE A 106 ? . . . . MSE A 486 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 6 MSE A 123 ? . . . . MSE A 503 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 7 MSE A 161 ? . . . . MSE A 541 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 8 MSE A 187 ? . . . . MSE A 567 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 74 ? ASP A 75 ? PHE A 454 ASP A 455 A 2 THR A 80 ? THR A 82 ? THR A 460 THR A 462 A 3 LYS A 88 ? SER A 90 ? LYS A 468 SER A 470 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 75 ? N ASP A 455 O THR A 80 ? O THR A 460 A 2 3 N VAL A 81 ? N VAL A 461 O TYR A 89 ? O TYR A 469 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id HEM _struct_site.pdbx_auth_seq_id 601 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 20 _struct_site.details 'BINDING SITE FOR RESIDUE HEM A 601' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 20 HIS A 1 ? HIS A 381 . ? 1_555 ? 2 AC1 20 LEU A 2 ? LEU A 382 . ? 1_555 ? 3 AC1 20 CYS A 4 ? CYS A 384 . ? 1_555 ? 4 AC1 20 PRO A 5 ? PRO A 385 . ? 1_555 ? 5 AC1 20 PHE A 25 ? PHE A 405 . ? 1_555 ? 6 AC1 20 PHE A 29 ? PHE A 409 . ? 1_555 ? 7 AC1 20 PHE A 63 ? PHE A 443 . ? 1_555 ? 8 AC1 20 LEU A 66 ? LEU A 446 . ? 1_555 ? 9 AC1 20 PHE A 74 ? PHE A 454 . ? 1_555 ? 10 AC1 20 ALA A 99 ? ALA A 479 . ? 1_555 ? 11 AC1 20 GLY A 100 ? GLY A 480 . ? 1_555 ? 12 AC1 20 LEU A 102 ? LEU A 482 . ? 1_555 ? 13 AC1 20 LEU A 103 ? LEU A 483 . ? 1_555 ? 14 AC1 20 HIS A 188 ? HIS A 568 . ? 1_555 ? 15 AC1 20 GLU A 191 ? GLU A 571 . ? 1_555 ? 16 AC1 20 PHE A 195 ? PHE A 575 . ? 1_555 ? 17 AC1 20 HOH C . ? HOH A 767 . ? 1_555 ? 18 AC1 20 HOH C . ? HOH A 802 . ? 1_555 ? 19 AC1 20 HOH C . ? HOH A 857 . ? 1_555 ? 20 AC1 20 HOH C . ? HOH A 900 . ? 1_555 ? # _pdbx_entry_details.entry_id 3CQV _pdbx_entry_details.sequence_details ;THE COMPLETE SEQUENCE OF THE CONSTRUCT USED FOR CRYSTALLIZATION IS: MHHHHHHSSGRENLYFQGSSPPSSDFAKEEVIGMVTRAHKDTFMYNQEQQENVPIDGFS QNENKNSYLCNTGGRMHLVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRI PGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDL LNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIM KNHPNEASIFTKLLLKLPDLRSLNNMHSEELLAFKVHP, FROM WHICH MHHHHHHSSGRENLYFQG IS AN N-TERMINAL EXPRESSION TAG FOLLOWED BY THE SEQUENCE OF A FUSION PROTEIN, CONTAINING RESIDUES 241-274 OF UNIPROT ENTRY Q14995 (NR1D2_HUMAN): SSPPSSDFAKEEVIGMVTRAHKDTFMYNQEQQEN, AND RESIDUES 358-579 OF UNIPROT ENTRY Q14995 (NR1D2_HUMAN): VPIDGFSQNENKNSYLCNTGGRMHLVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEV VEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLH SMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIR ALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMHSEELLAFKVHP. AUTHORS STATE THAT THE PROTEIN SAMPLE WAS MIXED WITH 1:2000 (W/W, PROTEASE TO PROTEIN) RATIO WITH TRYPSIN DURING CONCENTRATION, WHICH EVIDENTLY CLEAVED OFF MANY OF N-TERMINAL RESIDUES OF THE PROTEIN PRIOR TO CRYSTAL FORMATION. THE PRECISE LOCATION OF THE CLEAVAGE SITE HAS NOT BEEN DETERMINED. THEREFORE, THE SEQUENCE INFORMATION, AS WELL AS THE VALUES OF MATTHEWS COEFFICIENT AND SOLVENT CONTENT ARE BASED ON THE CHAIN LENGTH STARTING FROM THE FIRST VISIBLE N-TERMINAL RESIDUE IN ELECTRON DENSITY. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 415 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 NH1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ARG _pdbx_validate_close_contact.auth_seq_id_2 449 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.10 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 824 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 824 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_755 _pdbx_validate_symm_contact.dist 1.99 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 ASN _pdbx_validate_rmsd_bond.auth_seq_id_1 566 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 A _pdbx_validate_rmsd_bond.auth_atom_id_2 ND2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 ASN _pdbx_validate_rmsd_bond.auth_seq_id_2 566 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 A _pdbx_validate_rmsd_bond.bond_value 1.155 _pdbx_validate_rmsd_bond.bond_target_value 1.324 _pdbx_validate_rmsd_bond.bond_deviation -0.169 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.025 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 497 ? ? 33.06 68.21 2 1 ASP A 515 ? ? -39.67 127.18 3 1 GLU A 547 ? ? -143.13 57.21 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ASN _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 566 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id A _pdbx_validate_planes.rmsd 0.070 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 6 A MSE 386 ? MET SELENOMETHIONINE 2 A MSE 27 A MSE 407 ? MET SELENOMETHIONINE 3 A MSE 67 A MSE 447 ? MET SELENOMETHIONINE 4 A MSE 97 A MSE 477 ? MET SELENOMETHIONINE 5 A MSE 106 A MSE 486 ? MET SELENOMETHIONINE 6 A MSE 123 A MSE 503 ? MET SELENOMETHIONINE 7 A MSE 161 A MSE 541 ? MET SELENOMETHIONINE 8 A MSE 187 A MSE 567 ? MET SELENOMETHIONINE # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 730 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 577 ? A VAL 197 2 1 Y 1 A HIS 578 ? A HIS 198 3 1 Y 1 A PRO 579 ? A PRO 199 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HEM CHA C N N 137 HEM CHB C N N 138 HEM CHC C N N 139 HEM CHD C N N 140 HEM C1A C Y N 141 HEM C2A C Y N 142 HEM C3A C Y N 143 HEM C4A C Y N 144 HEM CMA C N N 145 HEM CAA C N N 146 HEM CBA C N N 147 HEM CGA C N N 148 HEM O1A O N N 149 HEM O2A O N N 150 HEM C1B C N N 151 HEM C2B C N N 152 HEM C3B C N N 153 HEM C4B C N N 154 HEM CMB C N N 155 HEM CAB C N N 156 HEM CBB C N N 157 HEM C1C C Y N 158 HEM C2C C Y N 159 HEM C3C C Y N 160 HEM C4C C Y N 161 HEM CMC C N N 162 HEM CAC C N N 163 HEM CBC C N N 164 HEM C1D C N N 165 HEM C2D C N N 166 HEM C3D C N N 167 HEM C4D C N N 168 HEM CMD C N N 169 HEM CAD C N N 170 HEM CBD C N N 171 HEM CGD C N N 172 HEM O1D O N N 173 HEM O2D O N N 174 HEM NA N Y N 175 HEM NB N N N 176 HEM NC N Y N 177 HEM ND N N N 178 HEM FE FE N N 179 HEM HHB H N N 180 HEM HHC H N N 181 HEM HHD H N N 182 HEM HMA H N N 183 HEM HMAA H N N 184 HEM HMAB H N N 185 HEM HAA H N N 186 HEM HAAA H N N 187 HEM HBA H N N 188 HEM HBAA H N N 189 HEM HMB H N N 190 HEM HMBA H N N 191 HEM HMBB H N N 192 HEM HAB H N N 193 HEM HBB H N N 194 HEM HBBA H N N 195 HEM HMC H N N 196 HEM HMCA H N N 197 HEM HMCB H N N 198 HEM HAC H N N 199 HEM HBC H N N 200 HEM HBCA H N N 201 HEM HMD H N N 202 HEM HMDA H N N 203 HEM HMDB H N N 204 HEM HAD H N N 205 HEM HADA H N N 206 HEM HBD H N N 207 HEM HBDA H N N 208 HEM H2A H N N 209 HEM H2D H N N 210 HEM HHA H N N 211 HIS N N N N 212 HIS CA C N S 213 HIS C C N N 214 HIS O O N N 215 HIS CB C N N 216 HIS CG C Y N 217 HIS ND1 N Y N 218 HIS CD2 C Y N 219 HIS CE1 C Y N 220 HIS NE2 N Y N 221 HIS OXT O N N 222 HIS H H N N 223 HIS H2 H N N 224 HIS HA H N N 225 HIS HB2 H N N 226 HIS HB3 H N N 227 HIS HD1 H N N 228 HIS HD2 H N N 229 HIS HE1 H N N 230 HIS HE2 H N N 231 HIS HXT H N N 232 HOH O O N N 233 HOH H1 H N N 234 HOH H2 H N N 235 ILE N N N N 236 ILE CA C N S 237 ILE C C N N 238 ILE O O N N 239 ILE CB C N S 240 ILE CG1 C N N 241 ILE CG2 C N N 242 ILE CD1 C N N 243 ILE OXT O N N 244 ILE H H N N 245 ILE H2 H N N 246 ILE HA H N N 247 ILE HB H N N 248 ILE HG12 H N N 249 ILE HG13 H N N 250 ILE HG21 H N N 251 ILE HG22 H N N 252 ILE HG23 H N N 253 ILE HD11 H N N 254 ILE HD12 H N N 255 ILE HD13 H N N 256 ILE HXT H N N 257 LEU N N N N 258 LEU CA C N S 259 LEU C C N N 260 LEU O O N N 261 LEU CB C N N 262 LEU CG C N N 263 LEU CD1 C N N 264 LEU CD2 C N N 265 LEU OXT O N N 266 LEU H H N N 267 LEU H2 H N N 268 LEU HA H N N 269 LEU HB2 H N N 270 LEU HB3 H N N 271 LEU HG H N N 272 LEU HD11 H N N 273 LEU HD12 H N N 274 LEU HD13 H N N 275 LEU HD21 H N N 276 LEU HD22 H N N 277 LEU HD23 H N N 278 LEU HXT H N N 279 LYS N N N N 280 LYS CA C N S 281 LYS C C N N 282 LYS O O N N 283 LYS CB C N N 284 LYS CG C N N 285 LYS CD C N N 286 LYS CE C N N 287 LYS NZ N N N 288 LYS OXT O N N 289 LYS H H N N 290 LYS H2 H N N 291 LYS HA H N N 292 LYS HB2 H N N 293 LYS HB3 H N N 294 LYS HG2 H N N 295 LYS HG3 H N N 296 LYS HD2 H N N 297 LYS HD3 H N N 298 LYS HE2 H N N 299 LYS HE3 H N N 300 LYS HZ1 H N N 301 LYS HZ2 H N N 302 LYS HZ3 H N N 303 LYS HXT H N N 304 MSE N N N N 305 MSE CA C N S 306 MSE C C N N 307 MSE O O N N 308 MSE OXT O N N 309 MSE CB C N N 310 MSE CG C N N 311 MSE SE SE N N 312 MSE CE C N N 313 MSE H H N N 314 MSE H2 H N N 315 MSE HA H N N 316 MSE HXT H N N 317 MSE HB2 H N N 318 MSE HB3 H N N 319 MSE HG2 H N N 320 MSE HG3 H N N 321 MSE HE1 H N N 322 MSE HE2 H N N 323 MSE HE3 H N N 324 PHE N N N N 325 PHE CA C N S 326 PHE C C N N 327 PHE O O N N 328 PHE CB C N N 329 PHE CG C Y N 330 PHE CD1 C Y N 331 PHE CD2 C Y N 332 PHE CE1 C Y N 333 PHE CE2 C Y N 334 PHE CZ C Y N 335 PHE OXT O N N 336 PHE H H N N 337 PHE H2 H N N 338 PHE HA H N N 339 PHE HB2 H N N 340 PHE HB3 H N N 341 PHE HD1 H N N 342 PHE HD2 H N N 343 PHE HE1 H N N 344 PHE HE2 H N N 345 PHE HZ H N N 346 PHE HXT H N N 347 PRO N N N N 348 PRO CA C N S 349 PRO C C N N 350 PRO O O N N 351 PRO CB C N N 352 PRO CG C N N 353 PRO CD C N N 354 PRO OXT O N N 355 PRO H H N N 356 PRO HA H N N 357 PRO HB2 H N N 358 PRO HB3 H N N 359 PRO HG2 H N N 360 PRO HG3 H N N 361 PRO HD2 H N N 362 PRO HD3 H N N 363 PRO HXT H N N 364 SER N N N N 365 SER CA C N S 366 SER C C N N 367 SER O O N N 368 SER CB C N N 369 SER OG O N N 370 SER OXT O N N 371 SER H H N N 372 SER H2 H N N 373 SER HA H N N 374 SER HB2 H N N 375 SER HB3 H N N 376 SER HG H N N 377 SER HXT H N N 378 THR N N N N 379 THR CA C N S 380 THR C C N N 381 THR O O N N 382 THR CB C N R 383 THR OG1 O N N 384 THR CG2 C N N 385 THR OXT O N N 386 THR H H N N 387 THR H2 H N N 388 THR HA H N N 389 THR HB H N N 390 THR HG1 H N N 391 THR HG21 H N N 392 THR HG22 H N N 393 THR HG23 H N N 394 THR HXT H N N 395 TRP N N N N 396 TRP CA C N S 397 TRP C C N N 398 TRP O O N N 399 TRP CB C N N 400 TRP CG C Y N 401 TRP CD1 C Y N 402 TRP CD2 C Y N 403 TRP NE1 N Y N 404 TRP CE2 C Y N 405 TRP CE3 C Y N 406 TRP CZ2 C Y N 407 TRP CZ3 C Y N 408 TRP CH2 C Y N 409 TRP OXT O N N 410 TRP H H N N 411 TRP H2 H N N 412 TRP HA H N N 413 TRP HB2 H N N 414 TRP HB3 H N N 415 TRP HD1 H N N 416 TRP HE1 H N N 417 TRP HE3 H N N 418 TRP HZ2 H N N 419 TRP HZ3 H N N 420 TRP HH2 H N N 421 TRP HXT H N N 422 TYR N N N N 423 TYR CA C N S 424 TYR C C N N 425 TYR O O N N 426 TYR CB C N N 427 TYR CG C Y N 428 TYR CD1 C Y N 429 TYR CD2 C Y N 430 TYR CE1 C Y N 431 TYR CE2 C Y N 432 TYR CZ C Y N 433 TYR OH O N N 434 TYR OXT O N N 435 TYR H H N N 436 TYR H2 H N N 437 TYR HA H N N 438 TYR HB2 H N N 439 TYR HB3 H N N 440 TYR HD1 H N N 441 TYR HD2 H N N 442 TYR HE1 H N N 443 TYR HE2 H N N 444 TYR HH H N N 445 TYR HXT H N N 446 VAL N N N N 447 VAL CA C N S 448 VAL C C N N 449 VAL O O N N 450 VAL CB C N N 451 VAL CG1 C N N 452 VAL CG2 C N N 453 VAL OXT O N N 454 VAL H H N N 455 VAL H2 H N N 456 VAL HA H N N 457 VAL HB H N N 458 VAL HG11 H N N 459 VAL HG12 H N N 460 VAL HG13 H N N 461 VAL HG21 H N N 462 VAL HG22 H N N 463 VAL HG23 H N N 464 VAL HXT H N N 465 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HEM CHA C1A sing N N 129 HEM CHA C4D doub N N 130 HEM CHA HHA sing N N 131 HEM CHB C4A sing N N 132 HEM CHB C1B doub N N 133 HEM CHB HHB sing N N 134 HEM CHC C4B sing N N 135 HEM CHC C1C doub N N 136 HEM CHC HHC sing N N 137 HEM CHD C4C doub N N 138 HEM CHD C1D sing N N 139 HEM CHD HHD sing N N 140 HEM C1A C2A doub Y N 141 HEM C1A NA sing Y N 142 HEM C2A C3A sing Y N 143 HEM C2A CAA sing N N 144 HEM C3A C4A doub Y N 145 HEM C3A CMA sing N N 146 HEM C4A NA sing Y N 147 HEM CMA HMA sing N N 148 HEM CMA HMAA sing N N 149 HEM CMA HMAB sing N N 150 HEM CAA CBA sing N N 151 HEM CAA HAA sing N N 152 HEM CAA HAAA sing N N 153 HEM CBA CGA sing N N 154 HEM CBA HBA sing N N 155 HEM CBA HBAA sing N N 156 HEM CGA O1A doub N N 157 HEM CGA O2A sing N N 158 HEM C1B C2B sing N N 159 HEM C1B NB sing N N 160 HEM C2B C3B doub N N 161 HEM C2B CMB sing N N 162 HEM C3B C4B sing N N 163 HEM C3B CAB sing N N 164 HEM C4B NB doub N N 165 HEM CMB HMB sing N N 166 HEM CMB HMBA sing N N 167 HEM CMB HMBB sing N N 168 HEM CAB CBB doub N N 169 HEM CAB HAB sing N N 170 HEM CBB HBB sing N N 171 HEM CBB HBBA sing N N 172 HEM C1C C2C sing Y N 173 HEM C1C NC sing Y N 174 HEM C2C C3C doub Y N 175 HEM C2C CMC sing N N 176 HEM C3C C4C sing Y N 177 HEM C3C CAC sing N N 178 HEM C4C NC sing Y N 179 HEM CMC HMC sing N N 180 HEM CMC HMCA sing N N 181 HEM CMC HMCB sing N N 182 HEM CAC CBC doub N N 183 HEM CAC HAC sing N N 184 HEM CBC HBC sing N N 185 HEM CBC HBCA sing N N 186 HEM C1D C2D sing N N 187 HEM C1D ND doub N N 188 HEM C2D C3D doub N N 189 HEM C2D CMD sing N N 190 HEM C3D C4D sing N N 191 HEM C3D CAD sing N N 192 HEM C4D ND sing N N 193 HEM CMD HMD sing N N 194 HEM CMD HMDA sing N N 195 HEM CMD HMDB sing N N 196 HEM CAD CBD sing N N 197 HEM CAD HAD sing N N 198 HEM CAD HADA sing N N 199 HEM CBD CGD sing N N 200 HEM CBD HBD sing N N 201 HEM CBD HBDA sing N N 202 HEM CGD O1D doub N N 203 HEM CGD O2D sing N N 204 HEM O2A H2A sing N N 205 HEM O2D H2D sing N N 206 HEM FE NA sing N N 207 HEM FE NB sing N N 208 HEM FE NC sing N N 209 HEM FE ND sing N N 210 HIS N CA sing N N 211 HIS N H sing N N 212 HIS N H2 sing N N 213 HIS CA C sing N N 214 HIS CA CB sing N N 215 HIS CA HA sing N N 216 HIS C O doub N N 217 HIS C OXT sing N N 218 HIS CB CG sing N N 219 HIS CB HB2 sing N N 220 HIS CB HB3 sing N N 221 HIS CG ND1 sing Y N 222 HIS CG CD2 doub Y N 223 HIS ND1 CE1 doub Y N 224 HIS ND1 HD1 sing N N 225 HIS CD2 NE2 sing Y N 226 HIS CD2 HD2 sing N N 227 HIS CE1 NE2 sing Y N 228 HIS CE1 HE1 sing N N 229 HIS NE2 HE2 sing N N 230 HIS OXT HXT sing N N 231 HOH O H1 sing N N 232 HOH O H2 sing N N 233 ILE N CA sing N N 234 ILE N H sing N N 235 ILE N H2 sing N N 236 ILE CA C sing N N 237 ILE CA CB sing N N 238 ILE CA HA sing N N 239 ILE C O doub N N 240 ILE C OXT sing N N 241 ILE CB CG1 sing N N 242 ILE CB CG2 sing N N 243 ILE CB HB sing N N 244 ILE CG1 CD1 sing N N 245 ILE CG1 HG12 sing N N 246 ILE CG1 HG13 sing N N 247 ILE CG2 HG21 sing N N 248 ILE CG2 HG22 sing N N 249 ILE CG2 HG23 sing N N 250 ILE CD1 HD11 sing N N 251 ILE CD1 HD12 sing N N 252 ILE CD1 HD13 sing N N 253 ILE OXT HXT sing N N 254 LEU N CA sing N N 255 LEU N H sing N N 256 LEU N H2 sing N N 257 LEU CA C sing N N 258 LEU CA CB sing N N 259 LEU CA HA sing N N 260 LEU C O doub N N 261 LEU C OXT sing N N 262 LEU CB CG sing N N 263 LEU CB HB2 sing N N 264 LEU CB HB3 sing N N 265 LEU CG CD1 sing N N 266 LEU CG CD2 sing N N 267 LEU CG HG sing N N 268 LEU CD1 HD11 sing N N 269 LEU CD1 HD12 sing N N 270 LEU CD1 HD13 sing N N 271 LEU CD2 HD21 sing N N 272 LEU CD2 HD22 sing N N 273 LEU CD2 HD23 sing N N 274 LEU OXT HXT sing N N 275 LYS N CA sing N N 276 LYS N H sing N N 277 LYS N H2 sing N N 278 LYS CA C sing N N 279 LYS CA CB sing N N 280 LYS CA HA sing N N 281 LYS C O doub N N 282 LYS C OXT sing N N 283 LYS CB CG sing N N 284 LYS CB HB2 sing N N 285 LYS CB HB3 sing N N 286 LYS CG CD sing N N 287 LYS CG HG2 sing N N 288 LYS CG HG3 sing N N 289 LYS CD CE sing N N 290 LYS CD HD2 sing N N 291 LYS CD HD3 sing N N 292 LYS CE NZ sing N N 293 LYS CE HE2 sing N N 294 LYS CE HE3 sing N N 295 LYS NZ HZ1 sing N N 296 LYS NZ HZ2 sing N N 297 LYS NZ HZ3 sing N N 298 LYS OXT HXT sing N N 299 MSE N CA sing N N 300 MSE N H sing N N 301 MSE N H2 sing N N 302 MSE CA C sing N N 303 MSE CA CB sing N N 304 MSE CA HA sing N N 305 MSE C O doub N N 306 MSE C OXT sing N N 307 MSE OXT HXT sing N N 308 MSE CB CG sing N N 309 MSE CB HB2 sing N N 310 MSE CB HB3 sing N N 311 MSE CG SE sing N N 312 MSE CG HG2 sing N N 313 MSE CG HG3 sing N N 314 MSE SE CE sing N N 315 MSE CE HE1 sing N N 316 MSE CE HE2 sing N N 317 MSE CE HE3 sing N N 318 PHE N CA sing N N 319 PHE N H sing N N 320 PHE N H2 sing N N 321 PHE CA C sing N N 322 PHE CA CB sing N N 323 PHE CA HA sing N N 324 PHE C O doub N N 325 PHE C OXT sing N N 326 PHE CB CG sing N N 327 PHE CB HB2 sing N N 328 PHE CB HB3 sing N N 329 PHE CG CD1 doub Y N 330 PHE CG CD2 sing Y N 331 PHE CD1 CE1 sing Y N 332 PHE CD1 HD1 sing N N 333 PHE CD2 CE2 doub Y N 334 PHE CD2 HD2 sing N N 335 PHE CE1 CZ doub Y N 336 PHE CE1 HE1 sing N N 337 PHE CE2 CZ sing Y N 338 PHE CE2 HE2 sing N N 339 PHE CZ HZ sing N N 340 PHE OXT HXT sing N N 341 PRO N CA sing N N 342 PRO N CD sing N N 343 PRO N H sing N N 344 PRO CA C sing N N 345 PRO CA CB sing N N 346 PRO CA HA sing N N 347 PRO C O doub N N 348 PRO C OXT sing N N 349 PRO CB CG sing N N 350 PRO CB HB2 sing N N 351 PRO CB HB3 sing N N 352 PRO CG CD sing N N 353 PRO CG HG2 sing N N 354 PRO CG HG3 sing N N 355 PRO CD HD2 sing N N 356 PRO CD HD3 sing N N 357 PRO OXT HXT sing N N 358 SER N CA sing N N 359 SER N H sing N N 360 SER N H2 sing N N 361 SER CA C sing N N 362 SER CA CB sing N N 363 SER CA HA sing N N 364 SER C O doub N N 365 SER C OXT sing N N 366 SER CB OG sing N N 367 SER CB HB2 sing N N 368 SER CB HB3 sing N N 369 SER OG HG sing N N 370 SER OXT HXT sing N N 371 THR N CA sing N N 372 THR N H sing N N 373 THR N H2 sing N N 374 THR CA C sing N N 375 THR CA CB sing N N 376 THR CA HA sing N N 377 THR C O doub N N 378 THR C OXT sing N N 379 THR CB OG1 sing N N 380 THR CB CG2 sing N N 381 THR CB HB sing N N 382 THR OG1 HG1 sing N N 383 THR CG2 HG21 sing N N 384 THR CG2 HG22 sing N N 385 THR CG2 HG23 sing N N 386 THR OXT HXT sing N N 387 TRP N CA sing N N 388 TRP N H sing N N 389 TRP N H2 sing N N 390 TRP CA C sing N N 391 TRP CA CB sing N N 392 TRP CA HA sing N N 393 TRP C O doub N N 394 TRP C OXT sing N N 395 TRP CB CG sing N N 396 TRP CB HB2 sing N N 397 TRP CB HB3 sing N N 398 TRP CG CD1 doub Y N 399 TRP CG CD2 sing Y N 400 TRP CD1 NE1 sing Y N 401 TRP CD1 HD1 sing N N 402 TRP CD2 CE2 doub Y N 403 TRP CD2 CE3 sing Y N 404 TRP NE1 CE2 sing Y N 405 TRP NE1 HE1 sing N N 406 TRP CE2 CZ2 sing Y N 407 TRP CE3 CZ3 doub Y N 408 TRP CE3 HE3 sing N N 409 TRP CZ2 CH2 doub Y N 410 TRP CZ2 HZ2 sing N N 411 TRP CZ3 CH2 sing Y N 412 TRP CZ3 HZ3 sing N N 413 TRP CH2 HH2 sing N N 414 TRP OXT HXT sing N N 415 TYR N CA sing N N 416 TYR N H sing N N 417 TYR N H2 sing N N 418 TYR CA C sing N N 419 TYR CA CB sing N N 420 TYR CA HA sing N N 421 TYR C O doub N N 422 TYR C OXT sing N N 423 TYR CB CG sing N N 424 TYR CB HB2 sing N N 425 TYR CB HB3 sing N N 426 TYR CG CD1 doub Y N 427 TYR CG CD2 sing Y N 428 TYR CD1 CE1 sing Y N 429 TYR CD1 HD1 sing N N 430 TYR CD2 CE2 doub Y N 431 TYR CD2 HD2 sing N N 432 TYR CE1 CZ doub Y N 433 TYR CE1 HE1 sing N N 434 TYR CE2 CZ sing Y N 435 TYR CE2 HE2 sing N N 436 TYR CZ OH sing N N 437 TYR OH HH sing N N 438 TYR OXT HXT sing N N 439 VAL N CA sing N N 440 VAL N H sing N N 441 VAL N H2 sing N N 442 VAL CA C sing N N 443 VAL CA CB sing N N 444 VAL CA HA sing N N 445 VAL C O doub N N 446 VAL C OXT sing N N 447 VAL CB CG1 sing N N 448 VAL CB CG2 sing N N 449 VAL CB HB sing N N 450 VAL CG1 HG11 sing N N 451 VAL CG1 HG12 sing N N 452 VAL CG1 HG13 sing N N 453 VAL CG2 HG21 sing N N 454 VAL CG2 HG22 sing N N 455 VAL CG2 HG23 sing N N 456 VAL OXT HXT sing N N 457 # _atom_sites.entry_id 3CQV _atom_sites.fract_transf_matrix[1][1] 0.013619 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020566 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014502 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S SE # loop_