data_3CQV # _entry.id 3CQV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3CQV RCSB RCSB047103 WWPDB D_1000047103 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3CQV _pdbx_database_status.recvd_initial_deposition_date 2008-04-03 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Xu, X.' 1 'Dong, A.' 2 'Pardee, K.I.' 3 'Reinking, J.' 4 'Krause, H.' 5 'Schuetz, A.' 6 'Zhang, R.' 7 'Cui, H.' 8 'Edwards, A.' 9 'Arrowsmith, C.H.' 10 'Weigelt, J.' 11 'Bountra, C.' 12 'Savchenko, A.' 13 'Botchkarev, A.' 14 'Structural Genomics Consortium (SGC)' 15 # _citation.id primary _citation.title 'The structural basis of gas-responsive transcription by the human nuclear hormone receptor REV-ERBbeta.' _citation.journal_abbrev 'Plos Biol.' _citation.journal_volume 7 _citation.page_first e43 _citation.page_last e43 _citation.year 2009 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1544-9173 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19243223 _citation.pdbx_database_id_DOI 10.1371/journal.pbio.1000043 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Pardee, K.I.' 1 primary 'Xu, X.' 2 primary 'Reinking, J.' 3 primary 'Schuetz, A.' 4 primary 'Dong, A.' 5 primary 'Liu, S.' 6 primary 'Zhang, R.' 7 primary 'Tiefenbach, J.' 8 primary 'Lajoie, G.' 9 primary 'Plotnikov, A.N.' 10 primary 'Botchkarev, A.' 11 primary 'Krause, H.M.' 12 primary 'Edwards, A.' 13 # _cell.entry_id 3CQV _cell.length_a 73.428 _cell.length_b 48.623 _cell.length_c 68.954 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3CQV _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nuclear receptor subfamily 1 group D member 2' 22870.023 1 ? ? 'UNP residues 381-579, see remarks 200 and 999' ? 2 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 1 ? ? ? ? 3 water nat water 18.015 157 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Rev-erb-beta, EAR-1R, Orphan nuclear hormone receptor BD73' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;HLVCP(MSE)SKSPYVDPHKSGHEIWEEFS(MSE)SFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVL(MSE)V RFASLFDAKERTVTFLSGKKYSVDDLHS(MSE)GAGDLLNS(MSE)FEFSEKLNALQLSDEE(MSE)SLFTAVVLVSADR SGIENVNSVEALQETLIRALRTLI(MSE)KNHPNEASIFTKLLLKLPDLRSLNN(MSE)HSEELLAFKVHP ; _entity_poly.pdbx_seq_one_letter_code_can ;HLVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT VTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLI MKNHPNEASIFTKLLLKLPDLRSLNNMHSEELLAFKVHP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 LEU n 1 3 VAL n 1 4 CYS n 1 5 PRO n 1 6 MSE n 1 7 SER n 1 8 LYS n 1 9 SER n 1 10 PRO n 1 11 TYR n 1 12 VAL n 1 13 ASP n 1 14 PRO n 1 15 HIS n 1 16 LYS n 1 17 SER n 1 18 GLY n 1 19 HIS n 1 20 GLU n 1 21 ILE n 1 22 TRP n 1 23 GLU n 1 24 GLU n 1 25 PHE n 1 26 SER n 1 27 MSE n 1 28 SER n 1 29 PHE n 1 30 THR n 1 31 PRO n 1 32 ALA n 1 33 VAL n 1 34 LYS n 1 35 GLU n 1 36 VAL n 1 37 VAL n 1 38 GLU n 1 39 PHE n 1 40 ALA n 1 41 LYS n 1 42 ARG n 1 43 ILE n 1 44 PRO n 1 45 GLY n 1 46 PHE n 1 47 ARG n 1 48 ASP n 1 49 LEU n 1 50 SER n 1 51 GLN n 1 52 HIS n 1 53 ASP n 1 54 GLN n 1 55 VAL n 1 56 ASN n 1 57 LEU n 1 58 LEU n 1 59 LYS n 1 60 ALA n 1 61 GLY n 1 62 THR n 1 63 PHE n 1 64 GLU n 1 65 VAL n 1 66 LEU n 1 67 MSE n 1 68 VAL n 1 69 ARG n 1 70 PHE n 1 71 ALA n 1 72 SER n 1 73 LEU n 1 74 PHE n 1 75 ASP n 1 76 ALA n 1 77 LYS n 1 78 GLU n 1 79 ARG n 1 80 THR n 1 81 VAL n 1 82 THR n 1 83 PHE n 1 84 LEU n 1 85 SER n 1 86 GLY n 1 87 LYS n 1 88 LYS n 1 89 TYR n 1 90 SER n 1 91 VAL n 1 92 ASP n 1 93 ASP n 1 94 LEU n 1 95 HIS n 1 96 SER n 1 97 MSE n 1 98 GLY n 1 99 ALA n 1 100 GLY n 1 101 ASP n 1 102 LEU n 1 103 LEU n 1 104 ASN n 1 105 SER n 1 106 MSE n 1 107 PHE n 1 108 GLU n 1 109 PHE n 1 110 SER n 1 111 GLU n 1 112 LYS n 1 113 LEU n 1 114 ASN n 1 115 ALA n 1 116 LEU n 1 117 GLN n 1 118 LEU n 1 119 SER n 1 120 ASP n 1 121 GLU n 1 122 GLU n 1 123 MSE n 1 124 SER n 1 125 LEU n 1 126 PHE n 1 127 THR n 1 128 ALA n 1 129 VAL n 1 130 VAL n 1 131 LEU n 1 132 VAL n 1 133 SER n 1 134 ALA n 1 135 ASP n 1 136 ARG n 1 137 SER n 1 138 GLY n 1 139 ILE n 1 140 GLU n 1 141 ASN n 1 142 VAL n 1 143 ASN n 1 144 SER n 1 145 VAL n 1 146 GLU n 1 147 ALA n 1 148 LEU n 1 149 GLN n 1 150 GLU n 1 151 THR n 1 152 LEU n 1 153 ILE n 1 154 ARG n 1 155 ALA n 1 156 LEU n 1 157 ARG n 1 158 THR n 1 159 LEU n 1 160 ILE n 1 161 MSE n 1 162 LYS n 1 163 ASN n 1 164 HIS n 1 165 PRO n 1 166 ASN n 1 167 GLU n 1 168 ALA n 1 169 SER n 1 170 ILE n 1 171 PHE n 1 172 THR n 1 173 LYS n 1 174 LEU n 1 175 LEU n 1 176 LEU n 1 177 LYS n 1 178 LEU n 1 179 PRO n 1 180 ASP n 1 181 LEU n 1 182 ARG n 1 183 SER n 1 184 LEU n 1 185 ASN n 1 186 ASN n 1 187 MSE n 1 188 HIS n 1 189 SER n 1 190 GLU n 1 191 GLU n 1 192 LEU n 1 193 LEU n 1 194 ALA n 1 195 PHE n 1 196 LYS n 1 197 VAL n 1 198 HIS n 1 199 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene NR1D2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 pLysE' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NR1D2_HUMAN _struct_ref.pdbx_db_accession Q14995 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;HLVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERT VTFLSGKKYSVDDLHSMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLI MKNHPNEASIFTKLLLKLPDLRSLNNMHSEELLAFKVHP ; _struct_ref.pdbx_align_begin 381 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3CQV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 199 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q14995 _struct_ref_seq.db_align_beg 381 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 579 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 381 _struct_ref_seq.pdbx_auth_seq_align_end 579 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3CQV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.69 _exptl_crystal.density_percent_sol 54.29 _exptl_crystal.description ;THE CRYSTAL WAS OBTAINED BY IN SITU PROTEOLYSIS. PROTEIN SAMPLE WAS MIXED WITH 1:2000 (W/W, PROTEASE TO PROTEIN) RATIO WITH TRYPSIN DURING CONCENTRATION. THE MATTHEWS COEFFICIENT CALCULATED BASED ON THE CONSTRUCTED SEQUENCE IS 1.94, AND SOLVENT CONTENT 36.7%. THE VALUES SHOWN IN FILE ARE CALCULATED BASED ON THE SEQUENCE STARTING FROM THE FIRST VISIBLE N-TERMINAL RESIDUE IN ELECTRON DENSITY, THEREFORE THEY MAY NOT BE ACCURATE. ; _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.6 _exptl_crystal_grow.pdbx_details '1.6 M Ammonium sulfate, 0.1 M Na Hepes pH 7.6, 4% Jeffamine M-600, VAPOR DIFFUSION, temperature 297K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-03-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9794 # _reflns.entry_id 3CQV _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 50.0 _reflns.number_all 20061 _reflns.number_obs 20061 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.090 _reflns.pdbx_Rsym_value 0.090 _reflns.pdbx_netI_over_sigmaI 11.1 _reflns.B_iso_Wilson_estimate 22.4 _reflns.pdbx_redundancy 9.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.93 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.453 _reflns_shell.pdbx_Rsym_value 0.453 _reflns_shell.meanI_over_sigI_obs 5.46 _reflns_shell.pdbx_redundancy 9.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 986 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3CQV _refine.ls_number_reflns_obs 19007 _refine.ls_number_reflns_all 19007 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.56 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 99.57 _refine.ls_R_factor_obs 0.19899 _refine.ls_R_factor_all 0.19899 _refine.ls_R_factor_R_work 0.19704 _refine.ls_R_factor_R_free 0.23541 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1020 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.920 _refine.B_iso_mean 25.471 _refine.aniso_B[1][1] 0.15 _refine.aniso_B[2][2] -0.30 _refine.aniso_B[3][3] 0.16 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. Program COOT 0.3.3 has also been used in refinement' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.147 _refine.pdbx_overall_ESU_R_Free 0.139 _refine.overall_SU_ML 0.083 _refine.overall_SU_B 2.679 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1571 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.number_atoms_solvent 157 _refine_hist.number_atoms_total 1771 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 40.56 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 1654 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.426 2.047 ? 2254 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.730 5.000 ? 203 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.759 24.429 ? 70 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.663 15.000 ? 290 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11.069 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.099 0.200 ? 250 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1239 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.208 0.200 ? 838 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.305 0.200 ? 1162 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.173 0.200 ? 111 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.220 0.200 ? 37 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.253 0.200 ? 14 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.596 1.500 ? 1027 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.840 2.000 ? 1625 'X-RAY DIFFRACTION' ? r_scbond_it 3.337 3.000 ? 695 'X-RAY DIFFRACTION' ? r_scangle_it 5.029 4.500 ? 627 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.95 _refine_ls_shell.number_reflns_R_work 1391 _refine_ls_shell.R_factor_R_work 0.205 _refine_ls_shell.percent_reflns_obs 99.93 _refine_ls_shell.R_factor_R_free 0.259 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 72 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3CQV _struct.title 'Crystal structure of Reverb beta in complex with heme' _struct.pdbx_descriptor 'Nuclear receptor subfamily 1 group D member 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3CQV _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;Reverb beta, heme, NR1D2, nuclear receptor, DNA-binding, Metal-binding, Nucleus, Repressor, Transcription, Transcription regulation, Zinc, Zinc-finger, Structural Genomics, Structural Genomics Consortium, SGC ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 17 ? ARG A 42 ? SER A 397 ARG A 422 1 ? 26 HELX_P HELX_P2 2 ILE A 43 ? LEU A 49 ? ILE A 423 LEU A 429 5 ? 7 HELX_P HELX_P3 3 SER A 50 ? PHE A 70 ? SER A 430 PHE A 450 1 ? 21 HELX_P HELX_P4 4 VAL A 91 ? MSE A 97 ? VAL A 471 MSE A 477 1 ? 7 HELX_P HELX_P5 5 GLY A 100 ? ALA A 115 ? GLY A 480 ALA A 495 1 ? 16 HELX_P HELX_P6 6 SER A 119 ? SER A 133 ? SER A 499 SER A 513 1 ? 15 HELX_P HELX_P7 7 ASN A 141 ? HIS A 164 ? ASN A 521 HIS A 544 1 ? 24 HELX_P HELX_P8 8 ALA A 168 ? ALA A 194 ? ALA A 548 ALA A 574 1 ? 27 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A PRO 5 C ? ? ? 1_555 A MSE 6 N ? ? A PRO 385 A MSE 386 1_555 ? ? ? ? ? ? ? 1.326 ? covale2 covale ? ? A MSE 6 C ? ? ? 1_555 A SER 7 N ? ? A MSE 386 A SER 387 1_555 ? ? ? ? ? ? ? 1.335 ? covale3 covale ? ? A SER 26 C ? ? ? 1_555 A MSE 27 N ? ? A SER 406 A MSE 407 1_555 ? ? ? ? ? ? ? 1.322 ? covale4 covale ? ? A MSE 27 C ? ? ? 1_555 A SER 28 N ? ? A MSE 407 A SER 408 1_555 ? ? ? ? ? ? ? 1.336 ? covale5 covale ? ? A LEU 66 C ? ? ? 1_555 A MSE 67 N ? ? A LEU 446 A MSE 447 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale ? ? A MSE 67 C ? ? ? 1_555 A VAL 68 N ? ? A MSE 447 A VAL 448 1_555 ? ? ? ? ? ? ? 1.342 ? covale7 covale ? ? A SER 96 C ? ? ? 1_555 A MSE 97 N ? ? A SER 476 A MSE 477 1_555 ? ? ? ? ? ? ? 1.328 ? covale8 covale ? ? A MSE 97 C ? ? ? 1_555 A GLY 98 N ? ? A MSE 477 A GLY 478 1_555 ? ? ? ? ? ? ? 1.328 ? covale9 covale ? ? A SER 105 C ? ? ? 1_555 A MSE 106 N ? ? A SER 485 A MSE 486 1_555 ? ? ? ? ? ? ? 1.333 ? covale10 covale ? ? A MSE 106 C ? ? ? 1_555 A PHE 107 N ? ? A MSE 486 A PHE 487 1_555 ? ? ? ? ? ? ? 1.342 ? covale11 covale ? ? A GLU 122 C ? ? ? 1_555 A MSE 123 N ? ? A GLU 502 A MSE 503 1_555 ? ? ? ? ? ? ? 1.326 ? covale12 covale ? ? A MSE 123 C ? ? ? 1_555 A SER 124 N ? ? A MSE 503 A SER 504 1_555 ? ? ? ? ? ? ? 1.333 ? covale13 covale ? ? A ILE 160 C ? ? ? 1_555 A MSE 161 N ? ? A ILE 540 A MSE 541 1_555 ? ? ? ? ? ? ? 1.330 ? covale14 covale ? ? A MSE 161 C ? ? ? 1_555 A LYS 162 N A ? A MSE 541 A LYS 542 1_555 ? ? ? ? ? ? ? 1.332 ? covale15 covale ? ? A MSE 161 C ? ? ? 1_555 A LYS 162 N B ? A MSE 541 A LYS 542 1_555 ? ? ? ? ? ? ? 1.324 ? covale16 covale ? ? A ASN 186 C A ? ? 1_555 A MSE 187 N ? ? A ASN 566 A MSE 567 1_555 ? ? ? ? ? ? ? 1.328 ? covale17 covale ? ? A ASN 186 C B ? ? 1_555 A MSE 187 N ? ? A ASN 566 A MSE 567 1_555 ? ? ? ? ? ? ? 1.329 ? covale18 covale ? ? A MSE 187 C ? ? ? 1_555 A HIS 188 N ? ? A MSE 567 A HIS 568 1_555 ? ? ? ? ? ? ? 1.320 ? metalc1 metalc ? ? A CYS 4 SG ? ? ? 1_555 B HEM . FE ? ? A CYS 384 A HEM 601 1_555 ? ? ? ? ? ? ? 2.337 ? metalc2 metalc ? ? A HIS 188 NE2 ? ? ? 1_555 B HEM . FE ? ? A HIS 568 A HEM 601 1_555 ? ? ? ? ? ? ? 2.161 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 74 ? ASP A 75 ? PHE A 454 ASP A 455 A 2 THR A 80 ? THR A 82 ? THR A 460 THR A 462 A 3 LYS A 88 ? SER A 90 ? LYS A 468 SER A 470 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 75 ? N ASP A 455 O THR A 80 ? O THR A 460 A 2 3 N VAL A 81 ? N VAL A 461 O TYR A 89 ? O TYR A 469 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 20 _struct_site.details 'BINDING SITE FOR RESIDUE HEM A 601' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 20 HIS A 1 ? HIS A 381 . ? 1_555 ? 2 AC1 20 LEU A 2 ? LEU A 382 . ? 1_555 ? 3 AC1 20 CYS A 4 ? CYS A 384 . ? 1_555 ? 4 AC1 20 PRO A 5 ? PRO A 385 . ? 1_555 ? 5 AC1 20 PHE A 25 ? PHE A 405 . ? 1_555 ? 6 AC1 20 PHE A 29 ? PHE A 409 . ? 1_555 ? 7 AC1 20 PHE A 63 ? PHE A 443 . ? 1_555 ? 8 AC1 20 LEU A 66 ? LEU A 446 . ? 1_555 ? 9 AC1 20 PHE A 74 ? PHE A 454 . ? 1_555 ? 10 AC1 20 ALA A 99 ? ALA A 479 . ? 1_555 ? 11 AC1 20 GLY A 100 ? GLY A 480 . ? 1_555 ? 12 AC1 20 LEU A 102 ? LEU A 482 . ? 1_555 ? 13 AC1 20 LEU A 103 ? LEU A 483 . ? 1_555 ? 14 AC1 20 HIS A 188 ? HIS A 568 . ? 1_555 ? 15 AC1 20 GLU A 191 ? GLU A 571 . ? 1_555 ? 16 AC1 20 PHE A 195 ? PHE A 575 . ? 1_555 ? 17 AC1 20 HOH C . ? HOH A 767 . ? 1_555 ? 18 AC1 20 HOH C . ? HOH A 802 . ? 1_555 ? 19 AC1 20 HOH C . ? HOH A 857 . ? 1_555 ? 20 AC1 20 HOH C . ? HOH A 900 . ? 1_555 ? # _database_PDB_matrix.entry_id 3CQV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3CQV _atom_sites.fract_transf_matrix[1][1] 0.013619 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020566 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014502 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 381 381 HIS HIS A . n A 1 2 LEU 2 382 382 LEU LEU A . n A 1 3 VAL 3 383 383 VAL VAL A . n A 1 4 CYS 4 384 384 CYS CYS A . n A 1 5 PRO 5 385 385 PRO PRO A . n A 1 6 MSE 6 386 386 MSE MSE A . n A 1 7 SER 7 387 387 SER SER A . n A 1 8 LYS 8 388 388 LYS LYS A . n A 1 9 SER 9 389 389 SER SER A . n A 1 10 PRO 10 390 390 PRO PRO A . n A 1 11 TYR 11 391 391 TYR TYR A . n A 1 12 VAL 12 392 392 VAL VAL A . n A 1 13 ASP 13 393 393 ASP ASP A . n A 1 14 PRO 14 394 394 PRO PRO A . n A 1 15 HIS 15 395 395 HIS HIS A . n A 1 16 LYS 16 396 396 LYS LYS A . n A 1 17 SER 17 397 397 SER SER A . n A 1 18 GLY 18 398 398 GLY GLY A . n A 1 19 HIS 19 399 399 HIS HIS A . n A 1 20 GLU 20 400 400 GLU GLU A . n A 1 21 ILE 21 401 401 ILE ILE A . n A 1 22 TRP 22 402 402 TRP TRP A . n A 1 23 GLU 23 403 403 GLU GLU A . n A 1 24 GLU 24 404 404 GLU GLU A . n A 1 25 PHE 25 405 405 PHE PHE A . n A 1 26 SER 26 406 406 SER SER A . n A 1 27 MSE 27 407 407 MSE MSE A . n A 1 28 SER 28 408 408 SER SER A . n A 1 29 PHE 29 409 409 PHE PHE A . n A 1 30 THR 30 410 410 THR THR A . n A 1 31 PRO 31 411 411 PRO PRO A . n A 1 32 ALA 32 412 412 ALA ALA A . n A 1 33 VAL 33 413 413 VAL VAL A . n A 1 34 LYS 34 414 414 LYS LYS A . n A 1 35 GLU 35 415 415 GLU GLU A . n A 1 36 VAL 36 416 416 VAL VAL A . n A 1 37 VAL 37 417 417 VAL VAL A . n A 1 38 GLU 38 418 418 GLU GLU A . n A 1 39 PHE 39 419 419 PHE PHE A . n A 1 40 ALA 40 420 420 ALA ALA A . n A 1 41 LYS 41 421 421 LYS LYS A . n A 1 42 ARG 42 422 422 ARG ARG A . n A 1 43 ILE 43 423 423 ILE ILE A . n A 1 44 PRO 44 424 424 PRO PRO A . n A 1 45 GLY 45 425 425 GLY GLY A . n A 1 46 PHE 46 426 426 PHE PHE A . n A 1 47 ARG 47 427 427 ARG ARG A . n A 1 48 ASP 48 428 428 ASP ASP A . n A 1 49 LEU 49 429 429 LEU LEU A . n A 1 50 SER 50 430 430 SER SER A . n A 1 51 GLN 51 431 431 GLN GLN A . n A 1 52 HIS 52 432 432 HIS HIS A . n A 1 53 ASP 53 433 433 ASP ASP A . n A 1 54 GLN 54 434 434 GLN GLN A . n A 1 55 VAL 55 435 435 VAL VAL A . n A 1 56 ASN 56 436 436 ASN ASN A . n A 1 57 LEU 57 437 437 LEU LEU A . n A 1 58 LEU 58 438 438 LEU LEU A . n A 1 59 LYS 59 439 439 LYS LYS A . n A 1 60 ALA 60 440 440 ALA ALA A . n A 1 61 GLY 61 441 441 GLY GLY A . n A 1 62 THR 62 442 442 THR THR A . n A 1 63 PHE 63 443 443 PHE PHE A . n A 1 64 GLU 64 444 444 GLU GLU A . n A 1 65 VAL 65 445 445 VAL VAL A . n A 1 66 LEU 66 446 446 LEU LEU A . n A 1 67 MSE 67 447 447 MSE MSE A . n A 1 68 VAL 68 448 448 VAL VAL A . n A 1 69 ARG 69 449 449 ARG ARG A . n A 1 70 PHE 70 450 450 PHE PHE A . n A 1 71 ALA 71 451 451 ALA ALA A . n A 1 72 SER 72 452 452 SER SER A . n A 1 73 LEU 73 453 453 LEU LEU A . n A 1 74 PHE 74 454 454 PHE PHE A . n A 1 75 ASP 75 455 455 ASP ASP A . n A 1 76 ALA 76 456 456 ALA ALA A . n A 1 77 LYS 77 457 457 LYS LYS A . n A 1 78 GLU 78 458 458 GLU GLU A . n A 1 79 ARG 79 459 459 ARG ARG A . n A 1 80 THR 80 460 460 THR THR A . n A 1 81 VAL 81 461 461 VAL VAL A . n A 1 82 THR 82 462 462 THR THR A . n A 1 83 PHE 83 463 463 PHE PHE A . n A 1 84 LEU 84 464 464 LEU LEU A . n A 1 85 SER 85 465 465 SER SER A . n A 1 86 GLY 86 466 466 GLY GLY A . n A 1 87 LYS 87 467 467 LYS LYS A . n A 1 88 LYS 88 468 468 LYS LYS A . n A 1 89 TYR 89 469 469 TYR TYR A . n A 1 90 SER 90 470 470 SER SER A . n A 1 91 VAL 91 471 471 VAL VAL A . n A 1 92 ASP 92 472 472 ASP ASP A . n A 1 93 ASP 93 473 473 ASP ASP A . n A 1 94 LEU 94 474 474 LEU LEU A . n A 1 95 HIS 95 475 475 HIS HIS A . n A 1 96 SER 96 476 476 SER SER A . n A 1 97 MSE 97 477 477 MSE MSE A . n A 1 98 GLY 98 478 478 GLY GLY A . n A 1 99 ALA 99 479 479 ALA ALA A . n A 1 100 GLY 100 480 480 GLY GLY A . n A 1 101 ASP 101 481 481 ASP ASP A . n A 1 102 LEU 102 482 482 LEU LEU A . n A 1 103 LEU 103 483 483 LEU LEU A . n A 1 104 ASN 104 484 484 ASN ASN A . n A 1 105 SER 105 485 485 SER SER A . n A 1 106 MSE 106 486 486 MSE MSE A . n A 1 107 PHE 107 487 487 PHE PHE A . n A 1 108 GLU 108 488 488 GLU GLU A . n A 1 109 PHE 109 489 489 PHE PHE A . n A 1 110 SER 110 490 490 SER SER A . n A 1 111 GLU 111 491 491 GLU GLU A . n A 1 112 LYS 112 492 492 LYS LYS A . n A 1 113 LEU 113 493 493 LEU LEU A . n A 1 114 ASN 114 494 494 ASN ASN A . n A 1 115 ALA 115 495 495 ALA ALA A . n A 1 116 LEU 116 496 496 LEU LEU A . n A 1 117 GLN 117 497 497 GLN GLN A . n A 1 118 LEU 118 498 498 LEU LEU A . n A 1 119 SER 119 499 499 SER SER A . n A 1 120 ASP 120 500 500 ASP ASP A . n A 1 121 GLU 121 501 501 GLU GLU A . n A 1 122 GLU 122 502 502 GLU GLU A . n A 1 123 MSE 123 503 503 MSE MSE A . n A 1 124 SER 124 504 504 SER SER A . n A 1 125 LEU 125 505 505 LEU LEU A . n A 1 126 PHE 126 506 506 PHE PHE A . n A 1 127 THR 127 507 507 THR THR A . n A 1 128 ALA 128 508 508 ALA ALA A . n A 1 129 VAL 129 509 509 VAL VAL A . n A 1 130 VAL 130 510 510 VAL VAL A . n A 1 131 LEU 131 511 511 LEU LEU A . n A 1 132 VAL 132 512 512 VAL VAL A . n A 1 133 SER 133 513 513 SER SER A . n A 1 134 ALA 134 514 514 ALA ALA A . n A 1 135 ASP 135 515 515 ASP ASP A . n A 1 136 ARG 136 516 516 ARG ARG A . n A 1 137 SER 137 517 517 SER SER A . n A 1 138 GLY 138 518 518 GLY GLY A . n A 1 139 ILE 139 519 519 ILE ILE A . n A 1 140 GLU 140 520 520 GLU GLU A . n A 1 141 ASN 141 521 521 ASN ASN A . n A 1 142 VAL 142 522 522 VAL VAL A . n A 1 143 ASN 143 523 523 ASN ASN A . n A 1 144 SER 144 524 524 SER SER A . n A 1 145 VAL 145 525 525 VAL VAL A . n A 1 146 GLU 146 526 526 GLU GLU A . n A 1 147 ALA 147 527 527 ALA ALA A . n A 1 148 LEU 148 528 528 LEU LEU A . n A 1 149 GLN 149 529 529 GLN GLN A . n A 1 150 GLU 150 530 530 GLU GLU A . n A 1 151 THR 151 531 531 THR THR A . n A 1 152 LEU 152 532 532 LEU LEU A . n A 1 153 ILE 153 533 533 ILE ILE A . n A 1 154 ARG 154 534 534 ARG ARG A . n A 1 155 ALA 155 535 535 ALA ALA A . n A 1 156 LEU 156 536 536 LEU LEU A . n A 1 157 ARG 157 537 537 ARG ARG A . n A 1 158 THR 158 538 538 THR THR A . n A 1 159 LEU 159 539 539 LEU LEU A . n A 1 160 ILE 160 540 540 ILE ILE A . n A 1 161 MSE 161 541 541 MSE MSE A . n A 1 162 LYS 162 542 542 LYS LYS A . n A 1 163 ASN 163 543 543 ASN ASN A . n A 1 164 HIS 164 544 544 HIS HIS A . n A 1 165 PRO 165 545 545 PRO PRO A . n A 1 166 ASN 166 546 546 ASN ASN A . n A 1 167 GLU 167 547 547 GLU GLU A . n A 1 168 ALA 168 548 548 ALA ALA A . n A 1 169 SER 169 549 549 SER SER A . n A 1 170 ILE 170 550 550 ILE ILE A . n A 1 171 PHE 171 551 551 PHE PHE A . n A 1 172 THR 172 552 552 THR THR A . n A 1 173 LYS 173 553 553 LYS LYS A . n A 1 174 LEU 174 554 554 LEU LEU A . n A 1 175 LEU 175 555 555 LEU LEU A . n A 1 176 LEU 176 556 556 LEU LEU A . n A 1 177 LYS 177 557 557 LYS LYS A . n A 1 178 LEU 178 558 558 LEU LEU A . n A 1 179 PRO 179 559 559 PRO PRO A . n A 1 180 ASP 180 560 560 ASP ASP A . n A 1 181 LEU 181 561 561 LEU LEU A . n A 1 182 ARG 182 562 562 ARG ARG A . n A 1 183 SER 183 563 563 SER SER A . n A 1 184 LEU 184 564 564 LEU LEU A . n A 1 185 ASN 185 565 565 ASN ASN A . n A 1 186 ASN 186 566 566 ASN ASN A . n A 1 187 MSE 187 567 567 MSE MSE A . n A 1 188 HIS 188 568 568 HIS HIS A . n A 1 189 SER 189 569 569 SER SER A . n A 1 190 GLU 190 570 570 GLU GLU A . n A 1 191 GLU 191 571 571 GLU GLU A . n A 1 192 LEU 192 572 572 LEU LEU A . n A 1 193 LEU 193 573 573 LEU LEU A . n A 1 194 ALA 194 574 574 ALA ALA A . n A 1 195 PHE 195 575 575 PHE PHE A . n A 1 196 LYS 196 576 576 LYS LYS A . n A 1 197 VAL 197 577 ? ? ? A . n A 1 198 HIS 198 578 ? ? ? A . n A 1 199 PRO 199 579 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM 1 601 601 HEM HEM A . C 3 HOH 1 701 1 HOH HOH A . C 3 HOH 2 702 2 HOH HOH A . C 3 HOH 3 703 3 HOH HOH A . C 3 HOH 4 704 4 HOH HOH A . C 3 HOH 5 705 5 HOH HOH A . C 3 HOH 6 706 6 HOH HOH A . C 3 HOH 7 707 7 HOH HOH A . C 3 HOH 8 708 8 HOH HOH A . C 3 HOH 9 709 9 HOH HOH A . C 3 HOH 10 710 10 HOH HOH A . C 3 HOH 11 711 11 HOH HOH A . C 3 HOH 12 712 12 HOH HOH A . C 3 HOH 13 713 13 HOH HOH A . C 3 HOH 14 714 14 HOH HOH A . C 3 HOH 15 715 15 HOH HOH A . C 3 HOH 16 716 16 HOH HOH A . C 3 HOH 17 717 17 HOH HOH A . C 3 HOH 18 718 18 HOH HOH A . C 3 HOH 19 719 19 HOH HOH A . C 3 HOH 20 720 20 HOH HOH A . C 3 HOH 21 722 22 HOH HOH A . C 3 HOH 22 723 23 HOH HOH A . C 3 HOH 23 724 24 HOH HOH A . C 3 HOH 24 725 25 HOH HOH A . C 3 HOH 25 726 26 HOH HOH A . C 3 HOH 26 727 27 HOH HOH A . C 3 HOH 27 728 28 HOH HOH A . C 3 HOH 28 729 29 HOH HOH A . C 3 HOH 29 730 30 HOH HOH A . C 3 HOH 30 731 31 HOH HOH A . C 3 HOH 31 732 32 HOH HOH A . C 3 HOH 32 733 33 HOH HOH A . C 3 HOH 33 734 34 HOH HOH A . C 3 HOH 34 735 35 HOH HOH A . C 3 HOH 35 736 36 HOH HOH A . C 3 HOH 36 737 37 HOH HOH A . C 3 HOH 37 738 38 HOH HOH A . C 3 HOH 38 739 39 HOH HOH A . C 3 HOH 39 740 40 HOH HOH A . C 3 HOH 40 741 41 HOH HOH A . C 3 HOH 41 744 44 HOH HOH A . C 3 HOH 42 745 45 HOH HOH A . C 3 HOH 43 746 46 HOH HOH A . C 3 HOH 44 748 48 HOH HOH A . C 3 HOH 45 749 49 HOH HOH A . C 3 HOH 46 750 50 HOH HOH A . C 3 HOH 47 752 52 HOH HOH A . C 3 HOH 48 755 55 HOH HOH A . C 3 HOH 49 757 57 HOH HOH A . C 3 HOH 50 758 58 HOH HOH A . C 3 HOH 51 760 60 HOH HOH A . C 3 HOH 52 761 61 HOH HOH A . C 3 HOH 53 762 62 HOH HOH A . C 3 HOH 54 764 64 HOH HOH A . C 3 HOH 55 765 65 HOH HOH A . C 3 HOH 56 766 66 HOH HOH A . C 3 HOH 57 767 67 HOH HOH A . C 3 HOH 58 768 68 HOH HOH A . C 3 HOH 59 769 69 HOH HOH A . C 3 HOH 60 770 70 HOH HOH A . C 3 HOH 61 771 71 HOH HOH A . C 3 HOH 62 772 72 HOH HOH A . C 3 HOH 63 773 73 HOH HOH A . C 3 HOH 64 776 76 HOH HOH A . C 3 HOH 65 777 77 HOH HOH A . C 3 HOH 66 778 78 HOH HOH A . C 3 HOH 67 780 80 HOH HOH A . C 3 HOH 68 781 81 HOH HOH A . C 3 HOH 69 782 82 HOH HOH A . C 3 HOH 70 783 83 HOH HOH A . C 3 HOH 71 784 84 HOH HOH A . C 3 HOH 72 785 85 HOH HOH A . C 3 HOH 73 786 86 HOH HOH A . C 3 HOH 74 788 88 HOH HOH A . C 3 HOH 75 789 89 HOH HOH A . C 3 HOH 76 790 90 HOH HOH A . C 3 HOH 77 792 92 HOH HOH A . C 3 HOH 78 793 93 HOH HOH A . C 3 HOH 79 794 94 HOH HOH A . C 3 HOH 80 795 95 HOH HOH A . C 3 HOH 81 796 96 HOH HOH A . C 3 HOH 82 798 98 HOH HOH A . C 3 HOH 83 799 99 HOH HOH A . C 3 HOH 84 800 100 HOH HOH A . C 3 HOH 85 801 101 HOH HOH A . C 3 HOH 86 802 102 HOH HOH A . C 3 HOH 87 804 104 HOH HOH A . C 3 HOH 88 805 105 HOH HOH A . C 3 HOH 89 808 108 HOH HOH A . C 3 HOH 90 809 109 HOH HOH A . C 3 HOH 91 813 113 HOH HOH A . C 3 HOH 92 814 114 HOH HOH A . C 3 HOH 93 815 115 HOH HOH A . C 3 HOH 94 816 116 HOH HOH A . C 3 HOH 95 817 117 HOH HOH A . C 3 HOH 96 818 118 HOH HOH A . C 3 HOH 97 819 119 HOH HOH A . C 3 HOH 98 820 120 HOH HOH A . C 3 HOH 99 823 123 HOH HOH A . C 3 HOH 100 824 124 HOH HOH A . C 3 HOH 101 827 127 HOH HOH A . C 3 HOH 102 828 128 HOH HOH A . C 3 HOH 103 829 129 HOH HOH A . C 3 HOH 104 830 130 HOH HOH A . C 3 HOH 105 831 131 HOH HOH A . C 3 HOH 106 832 132 HOH HOH A . C 3 HOH 107 834 134 HOH HOH A . C 3 HOH 108 835 135 HOH HOH A . C 3 HOH 109 837 137 HOH HOH A . C 3 HOH 110 838 138 HOH HOH A . C 3 HOH 111 839 139 HOH HOH A . C 3 HOH 112 840 140 HOH HOH A . C 3 HOH 113 841 141 HOH HOH A . C 3 HOH 114 843 143 HOH HOH A . C 3 HOH 115 846 146 HOH HOH A . C 3 HOH 116 847 147 HOH HOH A . C 3 HOH 117 848 148 HOH HOH A . C 3 HOH 118 850 150 HOH HOH A . C 3 HOH 119 851 151 HOH HOH A . C 3 HOH 120 854 154 HOH HOH A . C 3 HOH 121 856 156 HOH HOH A . C 3 HOH 122 857 157 HOH HOH A . C 3 HOH 123 859 159 HOH HOH A . C 3 HOH 124 862 162 HOH HOH A . C 3 HOH 125 865 165 HOH HOH A . C 3 HOH 126 866 166 HOH HOH A . C 3 HOH 127 867 167 HOH HOH A . C 3 HOH 128 869 169 HOH HOH A . C 3 HOH 129 870 170 HOH HOH A . C 3 HOH 130 871 171 HOH HOH A . C 3 HOH 131 872 172 HOH HOH A . C 3 HOH 132 874 174 HOH HOH A . C 3 HOH 133 876 176 HOH HOH A . C 3 HOH 134 878 178 HOH HOH A . C 3 HOH 135 879 179 HOH HOH A . C 3 HOH 136 881 181 HOH HOH A . C 3 HOH 137 882 182 HOH HOH A . C 3 HOH 138 883 183 HOH HOH A . C 3 HOH 139 884 184 HOH HOH A . C 3 HOH 140 886 186 HOH HOH A . C 3 HOH 141 887 187 HOH HOH A . C 3 HOH 142 888 188 HOH HOH A . C 3 HOH 143 889 189 HOH HOH A . C 3 HOH 144 890 190 HOH HOH A . C 3 HOH 145 891 191 HOH HOH A . C 3 HOH 146 892 192 HOH HOH A . C 3 HOH 147 898 198 HOH HOH A . C 3 HOH 148 899 199 HOH HOH A . C 3 HOH 149 900 200 HOH HOH A . C 3 HOH 150 901 201 HOH HOH A . C 3 HOH 151 903 203 HOH HOH A . C 3 HOH 152 905 205 HOH HOH A . C 3 HOH 153 907 207 HOH HOH A . C 3 HOH 154 908 208 HOH HOH A . C 3 HOH 155 909 209 HOH HOH A . C 3 HOH 156 911 211 HOH HOH A . C 3 HOH 157 912 212 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 6 A MSE 386 ? MET SELENOMETHIONINE 2 A MSE 27 A MSE 407 ? MET SELENOMETHIONINE 3 A MSE 67 A MSE 447 ? MET SELENOMETHIONINE 4 A MSE 97 A MSE 477 ? MET SELENOMETHIONINE 5 A MSE 106 A MSE 486 ? MET SELENOMETHIONINE 6 A MSE 123 A MSE 503 ? MET SELENOMETHIONINE 7 A MSE 161 A MSE 541 ? MET SELENOMETHIONINE 8 A MSE 187 A MSE 567 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 730 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 4 ? A CYS 384 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NA ? B HEM . ? A HEM 601 ? 1_555 94.7 ? 2 SG ? A CYS 4 ? A CYS 384 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NB ? B HEM . ? A HEM 601 ? 1_555 87.2 ? 3 NA ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NB ? B HEM . ? A HEM 601 ? 1_555 90.8 ? 4 SG ? A CYS 4 ? A CYS 384 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NC ? B HEM . ? A HEM 601 ? 1_555 86.0 ? 5 NA ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NC ? B HEM . ? A HEM 601 ? 1_555 178.1 ? 6 NB ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NC ? B HEM . ? A HEM 601 ? 1_555 87.5 ? 7 SG ? A CYS 4 ? A CYS 384 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 ND ? B HEM . ? A HEM 601 ? 1_555 94.1 ? 8 NA ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 ND ? B HEM . ? A HEM 601 ? 1_555 88.2 ? 9 NB ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 ND ? B HEM . ? A HEM 601 ? 1_555 178.5 ? 10 NC ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 ND ? B HEM . ? A HEM 601 ? 1_555 93.5 ? 11 SG ? A CYS 4 ? A CYS 384 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NE2 ? A HIS 188 ? A HIS 568 ? 1_555 172.5 ? 12 NA ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NE2 ? A HIS 188 ? A HIS 568 ? 1_555 88.6 ? 13 NB ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NE2 ? A HIS 188 ? A HIS 568 ? 1_555 86.0 ? 14 NC ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NE2 ? A HIS 188 ? A HIS 568 ? 1_555 90.5 ? 15 ND ? B HEM . ? A HEM 601 ? 1_555 FE ? B HEM . ? A HEM 601 ? 1_555 NE2 ? A HIS 188 ? A HIS 568 ? 1_555 92.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-05 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-3000 'data collection' . ? 2 HKL-3000 'data reduction' . ? 3 HKL-3000 'data scaling' . ? 4 SOLVE phasing . ? 5 # _pdbx_entry_details.entry_id 3CQV _pdbx_entry_details.sequence_details ;THE COMPLETE SEQUENCE OF THE CONSTRUCT USED FOR CRYSTALLIZATION IS: MHHHHHHSSGRENLYFQGSSPPSSDFAKEEVIGMVTRAHKDTFMYNQEQQENVPIDGFS QNENKNSYLCNTGGRMHLVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRI PGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDL LNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIM KNHPNEASIFTKLLLKLPDLRSLNNMHSEELLAFKVHP, FROM WHICH MHHHHHHSSGRENLYFQG IS AN N-TERMINAL EXPRESSION TAG FOLLOWED BY THE SEQUENCE OF A FUSION PROTEIN, CONTAINING RESIDUES 241-274 OF UNIPROT ENTRY Q14995 (NR1D2_HUMAN): SSPPSSDFAKEEVIGMVTRAHKDTFMYNQEQQEN, AND RESIDUES 358-579 OF UNIPROT ENTRY Q14995 (NR1D2_HUMAN): VPIDGFSQNENKNSYLCNTGGRMHLVCPMSKSPYVDPHKSGHEIWEEFSMSFTPAVKEV VEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLH SMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIR ALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMHSEELLAFKVHP. AUTHORS STATE THAT THE PROTEIN SAMPLE WAS MIXED WITH 1:2000 (W/W, PROTEASE TO PROTEIN) RATIO WITH TRYPSIN DURING CONCENTRATION, WHICH EVIDENTLY CLEAVED OFF MANY OF N-TERMINAL RESIDUES OF THE PROTEIN PRIOR TO CRYSTAL FORMATION. THE PRECISE LOCATION OF THE CLEAVAGE SITE HAS NOT BEEN DETERMINED. THEREFORE, THE SEQUENCE INFORMATION, AS WELL AS THE VALUES OF MATTHEWS COEFFICIENT AND SOLVENT CONTENT ARE BASED ON THE CHAIN LENGTH STARTING FROM THE FIRST VISIBLE N-TERMINAL RESIDUE IN ELECTRON DENSITY. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 415 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 NH1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ARG _pdbx_validate_close_contact.auth_seq_id_2 449 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.10 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 824 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 824 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_755 _pdbx_validate_symm_contact.dist 1.99 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 ASN _pdbx_validate_rmsd_bond.auth_seq_id_1 566 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 A _pdbx_validate_rmsd_bond.auth_atom_id_2 ND2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 ASN _pdbx_validate_rmsd_bond.auth_seq_id_2 566 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 A _pdbx_validate_rmsd_bond.bond_value 1.155 _pdbx_validate_rmsd_bond.bond_target_value 1.324 _pdbx_validate_rmsd_bond.bond_deviation -0.169 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.025 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 497 ? ? 33.06 68.21 2 1 ASP A 515 ? ? -39.67 127.18 3 1 GLU A 547 ? ? -143.13 57.21 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ASN _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 566 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id A _pdbx_validate_planes.rmsd 0.070 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 388 ? CD ? A LYS 8 CD 2 1 Y 1 A LYS 388 ? CE ? A LYS 8 CE 3 1 Y 1 A LYS 388 ? NZ ? A LYS 8 NZ 4 1 Y 1 A GLU 404 ? CD ? A GLU 24 CD 5 1 Y 1 A GLU 404 ? OE1 ? A GLU 24 OE1 6 1 Y 1 A GLU 404 ? OE2 ? A GLU 24 OE2 7 1 Y 1 A LYS 439 ? CE ? A LYS 59 CE 8 1 Y 1 A LYS 439 ? NZ ? A LYS 59 NZ 9 1 Y 1 A LYS 467 ? CE ? A LYS 87 CE 10 1 Y 1 A LYS 467 ? NZ ? A LYS 87 NZ 11 1 Y 0 A ASN 566 ? ND2 A A ASN 186 ND2 12 1 Y 1 A LYS 576 ? CG ? A LYS 196 CG 13 1 Y 1 A LYS 576 ? CD ? A LYS 196 CD 14 1 Y 1 A LYS 576 ? CE ? A LYS 196 CE 15 1 Y 1 A LYS 576 ? NZ ? A LYS 196 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 577 ? A VAL 197 2 1 Y 1 A HIS 578 ? A HIS 198 3 1 Y 1 A PRO 579 ? A PRO 199 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PROTOPORPHYRIN IX CONTAINING FE' HEM 3 water HOH #