HEADER TRANSFERASE 03-APR-08 3CQY TITLE CRYSTAL STRUCTURE OF A FUNCTIONALLY UNKNOWN PROTEIN (SO_1313) FROM TITLE 2 SHEWANELLA ONEIDENSIS MR-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANHYDRO-N-ACETYLMURAMIC ACID KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ANHMURNAC KINASE; COMPND 5 EC: 2.7.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: NP_716933, ANMK, SO_1313; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS APC7501, SO_1313, STRUCTURAL GENOMICS, PSI-2, SHEWANELLA ONEIDENSIS KEYWDS 2 MR-1, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, ATP-BINDING, CARBOHYDRATE METABOLISM, KINASE, KEYWDS 4 NUCLEOTIDE-BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,E.EVDOKIMOVA,M.KUDRITSKA,A.SAVCHENKO,A.M.EDWARDS,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 3CQY 1 VERSN REVDAT 2 24-FEB-09 3CQY 1 VERSN REVDAT 1 22-APR-08 3CQY 0 JRNL AUTH K.TAN,E.EVDOKIMOVA,M.KUDRITSKA,A.SAVCHENKO,A.M.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL THE STRUCTURE OF A FUNCTIONALLY UNKNOWN PROTEIN (SO_1313) JRNL TITL 2 FROM SHEWANELLA ONEIDENSIS MR-1. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 55302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2943 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3955 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 235 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5616 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 450 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.015 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5748 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7802 ; 1.407 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 739 ; 6.078 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 249 ;38.579 ;24.940 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 953 ;16.025 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;20.468 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 886 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4365 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2651 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3947 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 414 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 82 ; 0.183 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.217 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3761 ; 0.711 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5833 ; 1.221 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2249 ; 2.050 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1968 ; 3.289 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 369 REMARK 3 ORIGIN FOR THE GROUP (A): 35.1038 71.9556 47.1732 REMARK 3 T TENSOR REMARK 3 T11: -0.1222 T22: -0.1233 REMARK 3 T33: -0.0982 T12: -0.0074 REMARK 3 T13: -0.0193 T23: 0.0761 REMARK 3 L TENSOR REMARK 3 L11: 0.4940 L22: 1.8745 REMARK 3 L33: 1.4897 L12: 0.8054 REMARK 3 L13: -0.7380 L23: -0.7368 REMARK 3 S TENSOR REMARK 3 S11: 0.1254 S12: -0.0629 S13: -0.0399 REMARK 3 S21: 0.1987 S22: -0.1441 S23: -0.0332 REMARK 3 S31: 0.0538 S32: -0.0496 S33: 0.0187 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 369 REMARK 3 ORIGIN FOR THE GROUP (A): 34.2551 82.8883 8.4288 REMARK 3 T TENSOR REMARK 3 T11: -0.1160 T22: -0.0893 REMARK 3 T33: -0.0997 T12: 0.0076 REMARK 3 T13: 0.0291 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.7303 L22: 1.3126 REMARK 3 L33: 1.5199 L12: -0.4339 REMARK 3 L13: 0.7883 L23: -0.5086 REMARK 3 S TENSOR REMARK 3 S11: 0.0666 S12: 0.1481 S13: -0.2283 REMARK 3 S21: -0.1941 S22: -0.0326 S23: 0.1014 REMARK 3 S31: 0.1380 S32: -0.0405 S33: -0.0340 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CQY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-08. REMARK 100 THE RCSB ID CODE IS RCSB047106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58423 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 47.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.900 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 0.93100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, DM, RESOLVE, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5M NA FORMATE, 0.1M TRIS-HCL, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.84350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 73.90800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 73.90800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.26525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 73.90800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 73.90800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.42175 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 73.90800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.90800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 88.26525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 73.90800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.90800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.42175 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.84350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS REMARK 300 EXPERIMENTALLY UNKNOWN. BASED ON THE CRYSTAL STRUCTURE, IT IS REMARK 300 LIKELY MONOMERIC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 147.81600 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 147.81600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.84350 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 53 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 2 50.80 34.15 REMARK 500 LEU A 51 1.11 -69.53 REMARK 500 ASN A 180 -158.65 -152.48 REMARK 500 SER A 257 16.83 -69.94 REMARK 500 GLU B 108 -125.62 50.69 REMARK 500 VAL B 109 -57.02 -24.99 REMARK 500 ASN B 180 -151.92 -147.24 REMARK 500 PHE B 259 41.78 -97.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN A 2 23.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 530 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH A 533 DISTANCE = 5.14 ANGSTROMS REMARK 525 HOH B 531 DISTANCE = 5.88 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 372 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 372 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SIN A 373 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SIN A 374 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC7501 RELATED DB: TARGETDB DBREF 3CQY A 1 369 UNP Q8EHB5 ANMK_SHEON 1 369 DBREF 3CQY B 1 369 UNP Q8EHB5 ANMK_SHEON 1 369 SEQADV 3CQY GLY A 0 UNP Q8EHB5 EXPRESSION TAG SEQADV 3CQY GLY B 0 UNP Q8EHB5 EXPRESSION TAG SEQRES 1 A 370 GLY MSE ASN LYS ALA TYR TYR ILE GLY LEU MSE SER GLY SEQRES 2 A 370 THR SER MSE ASP GLY VAL ASP ALA VAL LEU VAL ASP PHE SEQRES 3 A 370 ALA GLY GLU GLN PRO GLN LEU ILE GLY THR HIS THR GLU SEQRES 4 A 370 THR ILE PRO THR HIS LEU LEU LYS GLY LEU GLN ARG LEU SEQRES 5 A 370 CYS LEU PRO GLY THR ASP GLU ILE ASN ARG LEU GLY ARG SEQRES 6 A 370 LEU ASP ARG SER VAL GLY LYS LEU PHE ALA LEU ALA VAL SEQRES 7 A 370 ASN ASN LEU LEU ALA LYS THR LYS ILE ALA LYS ASP GLU SEQRES 8 A 370 ILE ILE ALA ILE GLY SER HIS GLY GLN THR VAL ARG HIS SEQRES 9 A 370 MSE PRO ASN LEU GLU VAL GLY PHE THR LEU GLN ILE GLY SEQRES 10 A 370 ASP PRO ASN THR ILE ALA THR GLU THR GLY ILE ASP VAL SEQRES 11 A 370 ILE ALA ASP PHE ARG ARG LYS ASP ILE ALA LEU GLY GLY SEQRES 12 A 370 GLN GLY ALA PRO LEU VAL PRO ALA PHE HIS GLN GLN THR SEQRES 13 A 370 PHE ALA GLN VAL GLY LYS LYS ARG VAL ILE LEU ASN ILE SEQRES 14 A 370 GLY GLY ILE ALA ASN ILE THR TYR LEU PRO GLY ASN SER SEQRES 15 A 370 GLU GLU VAL LEU GLY PHE ASP THR GLY PRO GLY ASN THR SEQRES 16 A 370 LEU ILE ASP ALA TRP VAL GLN GLN VAL LYS ASN GLU SER SEQRES 17 A 370 TYR ASP LYS ASN GLY ALA TRP ALA ALA SER GLY LYS THR SEQRES 18 A 370 ASP PRO GLN LEU LEU ALA GLN LEU LEU SER HIS PRO TYR SEQRES 19 A 370 PHE SER LEU ALA TYR PRO LYS SER THR GLY ARG GLU LEU SEQRES 20 A 370 PHE ASN GLN ALA TRP LEU GLU GLN GLN LEU SER ALA PHE SEQRES 21 A 370 ASN GLN LEU ASN GLU GLU ASP ILE GLN SER THR LEU LEU SEQRES 22 A 370 ASP LEU THR CYS HIS SER ILE ALA GLN ASP ILE LEU LYS SEQRES 23 A 370 LEU ALA GLN GLU GLY GLU LEU PHE VAL CYS GLY GLY GLY SEQRES 24 A 370 ALA PHE ASN ALA GLU LEU MSE GLN ARG LEU ALA ALA LEU SEQRES 25 A 370 LEU PRO GLY TYR ARG ILE ASP THR THR SER ALA LEU GLY SEQRES 26 A 370 VAL ASP PRO LYS TRP ALA GLU GLY ILE ALA PHE ALA TRP SEQRES 27 A 370 LEU ALA MSE ARG TYR GLN LEU GLY LEU PRO ALA ASN LEU SEQRES 28 A 370 PRO ALA VAL THR GLY ALA SER ARG GLU ALA ILE LEU GLY SEQRES 29 A 370 GLY ARG PHE SER ALA LYS SEQRES 1 B 370 GLY MSE ASN LYS ALA TYR TYR ILE GLY LEU MSE SER GLY SEQRES 2 B 370 THR SER MSE ASP GLY VAL ASP ALA VAL LEU VAL ASP PHE SEQRES 3 B 370 ALA GLY GLU GLN PRO GLN LEU ILE GLY THR HIS THR GLU SEQRES 4 B 370 THR ILE PRO THR HIS LEU LEU LYS GLY LEU GLN ARG LEU SEQRES 5 B 370 CYS LEU PRO GLY THR ASP GLU ILE ASN ARG LEU GLY ARG SEQRES 6 B 370 LEU ASP ARG SER VAL GLY LYS LEU PHE ALA LEU ALA VAL SEQRES 7 B 370 ASN ASN LEU LEU ALA LYS THR LYS ILE ALA LYS ASP GLU SEQRES 8 B 370 ILE ILE ALA ILE GLY SER HIS GLY GLN THR VAL ARG HIS SEQRES 9 B 370 MSE PRO ASN LEU GLU VAL GLY PHE THR LEU GLN ILE GLY SEQRES 10 B 370 ASP PRO ASN THR ILE ALA THR GLU THR GLY ILE ASP VAL SEQRES 11 B 370 ILE ALA ASP PHE ARG ARG LYS ASP ILE ALA LEU GLY GLY SEQRES 12 B 370 GLN GLY ALA PRO LEU VAL PRO ALA PHE HIS GLN GLN THR SEQRES 13 B 370 PHE ALA GLN VAL GLY LYS LYS ARG VAL ILE LEU ASN ILE SEQRES 14 B 370 GLY GLY ILE ALA ASN ILE THR TYR LEU PRO GLY ASN SER SEQRES 15 B 370 GLU GLU VAL LEU GLY PHE ASP THR GLY PRO GLY ASN THR SEQRES 16 B 370 LEU ILE ASP ALA TRP VAL GLN GLN VAL LYS ASN GLU SER SEQRES 17 B 370 TYR ASP LYS ASN GLY ALA TRP ALA ALA SER GLY LYS THR SEQRES 18 B 370 ASP PRO GLN LEU LEU ALA GLN LEU LEU SER HIS PRO TYR SEQRES 19 B 370 PHE SER LEU ALA TYR PRO LYS SER THR GLY ARG GLU LEU SEQRES 20 B 370 PHE ASN GLN ALA TRP LEU GLU GLN GLN LEU SER ALA PHE SEQRES 21 B 370 ASN GLN LEU ASN GLU GLU ASP ILE GLN SER THR LEU LEU SEQRES 22 B 370 ASP LEU THR CYS HIS SER ILE ALA GLN ASP ILE LEU LYS SEQRES 23 B 370 LEU ALA GLN GLU GLY GLU LEU PHE VAL CYS GLY GLY GLY SEQRES 24 B 370 ALA PHE ASN ALA GLU LEU MSE GLN ARG LEU ALA ALA LEU SEQRES 25 B 370 LEU PRO GLY TYR ARG ILE ASP THR THR SER ALA LEU GLY SEQRES 26 B 370 VAL ASP PRO LYS TRP ALA GLU GLY ILE ALA PHE ALA TRP SEQRES 27 B 370 LEU ALA MSE ARG TYR GLN LEU GLY LEU PRO ALA ASN LEU SEQRES 28 B 370 PRO ALA VAL THR GLY ALA SER ARG GLU ALA ILE LEU GLY SEQRES 29 B 370 GLY ARG PHE SER ALA LYS MODRES 3CQY MSE A 1 MET SELENOMETHIONINE MODRES 3CQY MSE A 10 MET SELENOMETHIONINE MODRES 3CQY MSE A 15 MET SELENOMETHIONINE MODRES 3CQY MSE A 104 MET SELENOMETHIONINE MODRES 3CQY MSE A 305 MET SELENOMETHIONINE MODRES 3CQY MSE A 340 MET SELENOMETHIONINE MODRES 3CQY MSE B 1 MET SELENOMETHIONINE MODRES 3CQY MSE B 10 MET SELENOMETHIONINE MODRES 3CQY MSE B 15 MET SELENOMETHIONINE MODRES 3CQY MSE B 104 MET SELENOMETHIONINE MODRES 3CQY MSE B 305 MET SELENOMETHIONINE MODRES 3CQY MSE B 340 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 10 8 HET MSE A 15 8 HET MSE A 104 8 HET MSE A 305 8 HET MSE A 340 8 HET MSE B 1 8 HET MSE B 10 8 HET MSE B 15 8 HET MSE B 104 8 HET MSE B 305 8 HET MSE B 340 8 HET CL A 370 1 HET CL A 371 1 HET CL A 372 1 HET CL B 370 1 HET CL B 371 1 HET CL B 372 1 HET SIN A 373 8 HET SIN A 374 8 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM SIN SUCCINIC ACID FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 CL 6(CL 1-) FORMUL 9 SIN 2(C4 H6 O4) FORMUL 10 HOH *450(H2 O) HELIX 1 1 PRO A 41 ARG A 50 1 10 HELIX 2 2 LEU A 51 LEU A 53 5 3 HELIX 3 3 ASP A 57 LYS A 85 1 29 HELIX 4 4 ALA A 87 ASP A 89 5 3 HELIX 5 5 ASP A 117 GLY A 126 1 10 HELIX 6 6 PHE A 133 LEU A 140 1 8 HELIX 7 7 LEU A 147 ALA A 157 1 11 HELIX 8 8 ASN A 193 ASN A 205 1 13 HELIX 9 9 ASP A 209 ASN A 211 5 3 HELIX 10 10 GLY A 212 GLY A 218 1 7 HELIX 11 11 ASP A 221 SER A 230 1 10 HELIX 12 12 HIS A 231 LEU A 236 5 6 HELIX 13 13 ASN A 248 LEU A 256 1 9 HELIX 14 14 ASN A 263 ALA A 287 1 25 HELIX 15 15 GLY A 296 PHE A 300 5 5 HELIX 16 16 ASN A 301 LEU A 312 1 12 HELIX 17 17 SER A 321 GLY A 324 5 4 HELIX 18 18 TRP A 329 LEU A 344 1 16 HELIX 19 19 LEU A 350 GLY A 355 1 6 HELIX 20 20 PRO B 41 ARG B 50 1 10 HELIX 21 21 LEU B 51 LEU B 53 5 3 HELIX 22 22 ASP B 57 LYS B 85 1 29 HELIX 23 23 ALA B 87 ASP B 89 5 3 HELIX 24 24 ASP B 117 GLY B 126 1 10 HELIX 25 25 PHE B 133 LEU B 140 1 8 HELIX 26 26 VAL B 148 ALA B 157 1 10 HELIX 27 27 ASN B 193 LYS B 204 1 12 HELIX 28 28 ASP B 209 ASN B 211 5 3 HELIX 29 29 GLY B 212 SER B 217 1 6 HELIX 30 30 ASP B 221 SER B 230 1 10 HELIX 31 31 HIS B 231 LEU B 236 5 6 HELIX 32 32 ASN B 248 SER B 257 1 10 HELIX 33 33 ASN B 263 ALA B 287 1 25 HELIX 34 34 GLY B 296 PHE B 300 5 5 HELIX 35 35 ASN B 301 LEU B 312 1 12 HELIX 36 36 SER B 321 GLY B 324 5 4 HELIX 37 37 TRP B 329 GLY B 345 1 17 HELIX 38 38 LEU B 350 GLY B 355 1 6 SHEET 1 A12 GLN A 31 GLU A 38 0 SHEET 2 A12 VAL A 18 ASP A 24 -1 N ALA A 20 O HIS A 36 SHEET 3 A12 TYR A 5 SER A 11 -1 N TYR A 6 O VAL A 23 SHEET 4 A12 ILE A 91 SER A 96 1 O GLY A 95 N ILE A 7 SHEET 5 A12 VAL A 129 ALA A 131 1 O ILE A 130 N ILE A 94 SHEET 6 A12 GLY A 364 PHE A 366 -1 O PHE A 366 N VAL A 129 SHEET 7 A12 GLY B 364 PHE B 366 -1 O ARG B 365 N ARG A 365 SHEET 8 A12 VAL B 129 ALA B 131 -1 N VAL B 129 O PHE B 366 SHEET 9 A12 ILE B 91 SER B 96 1 N ILE B 94 O ILE B 130 SHEET 10 A12 TYR B 5 MSE B 10 1 N ILE B 7 O GLY B 95 SHEET 11 A12 VAL B 18 ASP B 24 -1 O ASP B 19 N MSE B 10 SHEET 12 A12 GLN B 31 GLU B 38 -1 O ILE B 33 N LEU B 22 SHEET 1 B 2 GLN A 99 MSE A 104 0 SHEET 2 B 2 PHE A 111 ILE A 115 -1 O LEU A 113 N ARG A 102 SHEET 1 C 5 LEU A 185 PRO A 191 0 SHEET 2 C 5 ILE A 171 LEU A 177 -1 N ALA A 172 O GLY A 190 SHEET 3 C 5 ARG A 163 ILE A 168 -1 N ARG A 163 O LEU A 177 SHEET 4 C 5 GLY A 290 CYS A 295 1 O CYS A 295 N LEU A 166 SHEET 5 C 5 TYR A 315 THR A 319 1 O ARG A 316 N LEU A 292 SHEET 1 D 2 GLN B 99 MSE B 104 0 SHEET 2 D 2 PHE B 111 ILE B 115 -1 O LEU B 113 N VAL B 101 SHEET 1 E 5 LEU B 185 PRO B 191 0 SHEET 2 E 5 ILE B 171 LEU B 177 -1 N ALA B 172 O GLY B 190 SHEET 3 E 5 ARG B 163 ILE B 168 -1 N ARG B 163 O LEU B 177 SHEET 4 E 5 GLY B 290 CYS B 295 1 O CYS B 295 N LEU B 166 SHEET 5 E 5 TYR B 315 THR B 319 1 O ARG B 316 N LEU B 292 LINK C GLY A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N ASN A 2 1555 1555 1.34 LINK C LEU A 9 N MSE A 10 1555 1555 1.33 LINK C MSE A 10 N SER A 11 1555 1555 1.32 LINK C SER A 14 N MSE A 15 1555 1555 1.34 LINK C MSE A 15 N ASP A 16 1555 1555 1.33 LINK C HIS A 103 N MSE A 104 1555 1555 1.33 LINK C MSE A 104 N PRO A 105 1555 1555 1.35 LINK C LEU A 304 N MSE A 305 1555 1555 1.34 LINK C MSE A 305 N GLN A 306 1555 1555 1.33 LINK C ALA A 339 N MSE A 340 1555 1555 1.33 LINK C MSE A 340 N ARG A 341 1555 1555 1.34 LINK C MSE B 1 N ASN B 2 1555 1555 1.34 LINK C LEU B 9 N MSE B 10 1555 1555 1.33 LINK C MSE B 10 N SER B 11 1555 1555 1.33 LINK C SER B 14 N MSE B 15 1555 1555 1.34 LINK C MSE B 15 N ASP B 16 1555 1555 1.33 LINK C HIS B 103 N MSE B 104 1555 1555 1.33 LINK C MSE B 104 N PRO B 105 1555 1555 1.35 LINK C LEU B 304 N MSE B 305 1555 1555 1.33 LINK C MSE B 305 N GLN B 306 1555 1555 1.32 LINK C ALA B 339 N MSE B 340 1555 1555 1.32 LINK C MSE B 340 N ARG B 341 1555 1555 1.33 CISPEP 1 ALA A 145 PRO A 146 0 -12.67 CISPEP 2 TYR A 238 PRO A 239 0 -10.13 CISPEP 3 ALA B 145 PRO B 146 0 -11.43 CISPEP 4 TYR B 238 PRO B 239 0 -4.46 SITE 1 AC1 2 PRO B 146 LEU B 147 SITE 1 AC2 2 PRO A 146 LEU A 147 SITE 1 AC3 4 GLY B 47 ARG B 50 ARG B 61 ARG B 64 SITE 1 AC4 4 GLY A 47 ARG A 50 ARG A 61 ARG A 64 SITE 1 AC5 2 ARG A 67 LYS A 71 SITE 1 AC6 2 ARG B 67 LYS B 71 SITE 1 AC7 5 THR B 100 ARG B 134 ILE B 171 ASP B 188 SITE 2 AC7 5 THR B 242 SITE 1 AC8 5 THR A 100 HIS A 103 ILE A 171 ASP A 188 SITE 2 AC8 5 THR A 242 CRYST1 147.816 147.816 117.687 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006765 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006765 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008497 0.00000