HEADER OXIDOREDUCTASE 09-APR-08 3CSD TITLE ACTINORHODIN POLYKETIDE KETOREDUCTASE MUTANT P94L BOUND TO NADPH AND TITLE 2 THE INHIBITOR EMODIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE KETOACYL REDUCTASE; COMPND 3 CHAIN: B, A; COMPND 4 EC: 1.3.1.-; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 STRAIN: A3(2); SOURCE 4 GENE: ACTIII; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28C KEYWDS OXIDOREDUCTASE, ANTIBIOTIC BIOSYNTHESIS, NADP EXPDTA X-RAY DIFFRACTION AUTHOR P.JAVIDPOUR REVDAT 4 21-FEB-24 3CSD 1 REMARK REVDAT 3 20-OCT-21 3CSD 1 REMARK SEQADV REVDAT 2 25-OCT-17 3CSD 1 REMARK REVDAT 1 14-APR-09 3CSD 0 JRNL AUTH P.JAVIDPOUR JRNL TITL ACTINORHODIN POLYKETIDE KETOREDUCTASE MUTANT P94L BOUND TO JRNL TITL 2 NADPH AND THE INHIBITOR EMODIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34136 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1795 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2457 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3752 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 176 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.80000 REMARK 3 B22 (A**2) : 0.80000 REMARK 3 B33 (A**2) : -1.20000 REMARK 3 B12 (A**2) : 0.40000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.194 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.485 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3991 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5448 ; 2.888 ; 2.024 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 510 ; 6.607 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;37.885 ;23.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 612 ;18.063 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;16.915 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 633 ; 0.179 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2977 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1852 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2709 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 206 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.252 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.176 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2583 ; 1.315 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4000 ; 2.182 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1673 ; 3.307 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1448 ; 5.143 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CSD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047153. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35974 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 50.0 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.43333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.21667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.21667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 82.43333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 157.63350 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 -91.00974 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -247.30000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 -0.500000 0.866025 0.000000 157.63350 REMARK 350 BIOMT2 1 0.866025 0.500000 0.000000 -91.00974 REMARK 350 BIOMT3 1 0.000000 0.000000 -1.000000 -247.30000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 TYR B 202 REMARK 465 SER B 203 REMARK 465 ASP B 204 REMARK 465 ILE B 205 REMARK 465 TRP B 206 REMARK 465 GLU B 207 REMARK 465 VAL B 208 REMARK 465 SER B 209 REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 GLN A 4 REMARK 465 ASP A 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 79 CG GLU B 79 CD 0.096 REMARK 500 GLU B 105 CG GLU B 105 CD 0.093 REMARK 500 GLU B 234 CB GLU B 234 CG 0.116 REMARK 500 GLU B 234 CG GLU B 234 CD 0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 177 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 177 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 MET B 235 CG - SD - CE ANGL. DEV. = -14.1 DEGREES REMARK 500 MET A 235 CG - SD - CE ANGL. DEV. = -14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 14 32.03 -90.58 REMARK 500 LYS B 127 -82.72 -86.86 REMARK 500 ALA B 143 -118.99 -105.62 REMARK 500 VAL B 254 79.83 -119.67 REMARK 500 LYS A 127 -77.68 -84.59 REMARK 500 ARG A 134 -39.14 176.62 REMARK 500 ALA A 143 -118.92 -100.19 REMARK 500 SER A 144 159.94 179.03 REMARK 500 GLU A 191 93.24 -69.21 REMARK 500 TRP A 206 -163.62 -127.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EMO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EMO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EMO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EMO A 303 DBREF 3CSD B 1 261 UNP P16544 ACT3_STRCO 1 261 DBREF 3CSD A 1 261 UNP P16544 ACT3_STRCO 1 261 SEQADV 3CSD MET B -19 UNP P16544 EXPRESSION TAG SEQADV 3CSD GLY B -18 UNP P16544 EXPRESSION TAG SEQADV 3CSD SER B -17 UNP P16544 EXPRESSION TAG SEQADV 3CSD SER B -16 UNP P16544 EXPRESSION TAG SEQADV 3CSD HIS B -15 UNP P16544 EXPRESSION TAG SEQADV 3CSD HIS B -14 UNP P16544 EXPRESSION TAG SEQADV 3CSD HIS B -13 UNP P16544 EXPRESSION TAG SEQADV 3CSD HIS B -12 UNP P16544 EXPRESSION TAG SEQADV 3CSD HIS B -11 UNP P16544 EXPRESSION TAG SEQADV 3CSD HIS B -10 UNP P16544 EXPRESSION TAG SEQADV 3CSD SER B -9 UNP P16544 EXPRESSION TAG SEQADV 3CSD SER B -8 UNP P16544 EXPRESSION TAG SEQADV 3CSD GLY B -7 UNP P16544 EXPRESSION TAG SEQADV 3CSD LEU B -6 UNP P16544 EXPRESSION TAG SEQADV 3CSD VAL B -5 UNP P16544 EXPRESSION TAG SEQADV 3CSD PRO B -4 UNP P16544 EXPRESSION TAG SEQADV 3CSD ARG B -3 UNP P16544 EXPRESSION TAG SEQADV 3CSD GLY B -2 UNP P16544 EXPRESSION TAG SEQADV 3CSD SER B -1 UNP P16544 EXPRESSION TAG SEQADV 3CSD HIS B 0 UNP P16544 EXPRESSION TAG SEQADV 3CSD LEU B 94 UNP P16544 PRO 94 ENGINEERED MUTATION SEQADV 3CSD MET A -19 UNP P16544 EXPRESSION TAG SEQADV 3CSD GLY A -18 UNP P16544 EXPRESSION TAG SEQADV 3CSD SER A -17 UNP P16544 EXPRESSION TAG SEQADV 3CSD SER A -16 UNP P16544 EXPRESSION TAG SEQADV 3CSD HIS A -15 UNP P16544 EXPRESSION TAG SEQADV 3CSD HIS A -14 UNP P16544 EXPRESSION TAG SEQADV 3CSD HIS A -13 UNP P16544 EXPRESSION TAG SEQADV 3CSD HIS A -12 UNP P16544 EXPRESSION TAG SEQADV 3CSD HIS A -11 UNP P16544 EXPRESSION TAG SEQADV 3CSD HIS A -10 UNP P16544 EXPRESSION TAG SEQADV 3CSD SER A -9 UNP P16544 EXPRESSION TAG SEQADV 3CSD SER A -8 UNP P16544 EXPRESSION TAG SEQADV 3CSD GLY A -7 UNP P16544 EXPRESSION TAG SEQADV 3CSD LEU A -6 UNP P16544 EXPRESSION TAG SEQADV 3CSD VAL A -5 UNP P16544 EXPRESSION TAG SEQADV 3CSD PRO A -4 UNP P16544 EXPRESSION TAG SEQADV 3CSD ARG A -3 UNP P16544 EXPRESSION TAG SEQADV 3CSD GLY A -2 UNP P16544 EXPRESSION TAG SEQADV 3CSD SER A -1 UNP P16544 EXPRESSION TAG SEQADV 3CSD HIS A 0 UNP P16544 EXPRESSION TAG SEQADV 3CSD LEU A 94 UNP P16544 PRO 94 ENGINEERED MUTATION SEQRES 1 B 281 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 281 LEU VAL PRO ARG GLY SER HIS MET ALA THR GLN ASP SER SEQRES 3 B 281 GLU VAL ALA LEU VAL THR GLY ALA THR SER GLY ILE GLY SEQRES 4 B 281 LEU GLU ILE ALA ARG ARG LEU GLY LYS GLU GLY LEU ARG SEQRES 5 B 281 VAL PHE VAL CYS ALA ARG GLY GLU GLU GLY LEU ARG THR SEQRES 6 B 281 THR LEU LYS GLU LEU ARG GLU ALA GLY VAL GLU ALA ASP SEQRES 7 B 281 GLY ARG THR CYS ASP VAL ARG SER VAL PRO GLU ILE GLU SEQRES 8 B 281 ALA LEU VAL ALA ALA VAL VAL GLU ARG TYR GLY PRO VAL SEQRES 9 B 281 ASP VAL LEU VAL ASN ASN ALA GLY ARG LEU GLY GLY GLY SEQRES 10 B 281 ALA THR ALA GLU LEU ALA ASP GLU LEU TRP LEU ASP VAL SEQRES 11 B 281 VAL GLU THR ASN LEU THR GLY VAL PHE ARG VAL THR LYS SEQRES 12 B 281 GLN VAL LEU LYS ALA GLY GLY MET LEU GLU ARG GLY THR SEQRES 13 B 281 GLY ARG ILE VAL ASN ILE ALA SER THR GLY GLY LYS GLN SEQRES 14 B 281 GLY VAL VAL HIS ALA ALA PRO TYR SER ALA SER LYS HIS SEQRES 15 B 281 GLY VAL VAL GLY PHE THR LYS ALA LEU GLY LEU GLU LEU SEQRES 16 B 281 ALA ARG THR GLY ILE THR VAL ASN ALA VAL CYS PRO GLY SEQRES 17 B 281 PHE VAL GLU THR PRO MET ALA ALA SER VAL ARG GLU HIS SEQRES 18 B 281 TYR SER ASP ILE TRP GLU VAL SER THR GLU GLU ALA PHE SEQRES 19 B 281 ASP ARG ILE THR ALA ARG VAL PRO ILE GLY ARG TYR VAL SEQRES 20 B 281 GLN PRO SER GLU VAL ALA GLU MET VAL ALA TYR LEU ILE SEQRES 21 B 281 GLY PRO GLY ALA ALA ALA VAL THR ALA GLN ALA LEU ASN SEQRES 22 B 281 VAL CYS GLY GLY LEU GLY ASN TYR SEQRES 1 A 281 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 281 LEU VAL PRO ARG GLY SER HIS MET ALA THR GLN ASP SER SEQRES 3 A 281 GLU VAL ALA LEU VAL THR GLY ALA THR SER GLY ILE GLY SEQRES 4 A 281 LEU GLU ILE ALA ARG ARG LEU GLY LYS GLU GLY LEU ARG SEQRES 5 A 281 VAL PHE VAL CYS ALA ARG GLY GLU GLU GLY LEU ARG THR SEQRES 6 A 281 THR LEU LYS GLU LEU ARG GLU ALA GLY VAL GLU ALA ASP SEQRES 7 A 281 GLY ARG THR CYS ASP VAL ARG SER VAL PRO GLU ILE GLU SEQRES 8 A 281 ALA LEU VAL ALA ALA VAL VAL GLU ARG TYR GLY PRO VAL SEQRES 9 A 281 ASP VAL LEU VAL ASN ASN ALA GLY ARG LEU GLY GLY GLY SEQRES 10 A 281 ALA THR ALA GLU LEU ALA ASP GLU LEU TRP LEU ASP VAL SEQRES 11 A 281 VAL GLU THR ASN LEU THR GLY VAL PHE ARG VAL THR LYS SEQRES 12 A 281 GLN VAL LEU LYS ALA GLY GLY MET LEU GLU ARG GLY THR SEQRES 13 A 281 GLY ARG ILE VAL ASN ILE ALA SER THR GLY GLY LYS GLN SEQRES 14 A 281 GLY VAL VAL HIS ALA ALA PRO TYR SER ALA SER LYS HIS SEQRES 15 A 281 GLY VAL VAL GLY PHE THR LYS ALA LEU GLY LEU GLU LEU SEQRES 16 A 281 ALA ARG THR GLY ILE THR VAL ASN ALA VAL CYS PRO GLY SEQRES 17 A 281 PHE VAL GLU THR PRO MET ALA ALA SER VAL ARG GLU HIS SEQRES 18 A 281 TYR SER ASP ILE TRP GLU VAL SER THR GLU GLU ALA PHE SEQRES 19 A 281 ASP ARG ILE THR ALA ARG VAL PRO ILE GLY ARG TYR VAL SEQRES 20 A 281 GLN PRO SER GLU VAL ALA GLU MET VAL ALA TYR LEU ILE SEQRES 21 A 281 GLY PRO GLY ALA ALA ALA VAL THR ALA GLN ALA LEU ASN SEQRES 22 A 281 VAL CYS GLY GLY LEU GLY ASN TYR HET NDP B 301 48 HET EMO B 302 20 HET EMO B 303 20 HET NDP A 301 48 HET EMO A 302 20 HET EMO A 303 20 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM EMO 3-METHYL-1,6,8-TRIHYDROXYANTHRAQUINONE HETSYN EMO EMODIN FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 4 EMO 4(C15 H10 O5) FORMUL 9 HOH *182(H2 O) HELIX 1 1 SER B 16 GLU B 29 1 14 HELIX 2 2 GLY B 39 ALA B 53 1 15 HELIX 3 3 SER B 66 TYR B 81 1 16 HELIX 4 4 ALA B 98 LEU B 102 5 5 HELIX 5 5 ALA B 103 LEU B 115 1 13 HELIX 6 6 LEU B 115 ALA B 128 1 14 HELIX 7 7 GLY B 130 GLY B 135 1 6 HELIX 8 8 SER B 144 LYS B 148 5 5 HELIX 9 9 ALA B 154 LEU B 175 1 22 HELIX 10 10 THR B 192 ARG B 199 1 8 HELIX 11 11 GLU B 212 VAL B 221 1 10 HELIX 12 12 GLN B 228 GLY B 241 1 14 HELIX 13 13 PRO B 242 ALA B 245 5 4 HELIX 14 14 SER A 16 GLU A 29 1 14 HELIX 15 15 GLY A 39 ALA A 53 1 15 HELIX 16 16 SER A 66 GLY A 82 1 17 HELIX 17 17 ALA A 98 LEU A 102 5 5 HELIX 18 18 ALA A 103 LEU A 115 1 13 HELIX 19 19 LEU A 115 ALA A 128 1 14 HELIX 20 20 SER A 144 LYS A 148 5 5 HELIX 21 21 ALA A 154 LEU A 175 1 22 HELIX 22 22 THR A 192 ILE A 205 1 14 HELIX 23 23 SER A 209 ALA A 219 1 11 HELIX 24 24 GLN A 228 GLY A 241 1 14 HELIX 25 25 PRO A 242 ALA A 245 5 4 SHEET 1 A 7 ALA B 57 THR B 61 0 SHEET 2 A 7 ARG B 32 ALA B 37 1 N VAL B 35 O ASP B 58 SHEET 3 A 7 VAL B 8 VAL B 11 1 N ALA B 9 O ARG B 32 SHEET 4 A 7 VAL B 86 ASN B 89 1 O VAL B 88 N LEU B 10 SHEET 5 A 7 THR B 136 ILE B 142 1 O ILE B 142 N ASN B 89 SHEET 6 A 7 GLY B 179 PRO B 187 1 O ASN B 183 N ASN B 141 SHEET 7 A 7 ALA B 251 VAL B 254 1 O LEU B 252 N ALA B 184 SHEET 1 B 7 ALA A 57 THR A 61 0 SHEET 2 B 7 ARG A 32 ALA A 37 1 N VAL A 33 O ASP A 58 SHEET 3 B 7 VAL A 8 VAL A 11 1 N ALA A 9 O PHE A 34 SHEET 4 B 7 VAL A 86 ASN A 89 1 O VAL A 88 N LEU A 10 SHEET 5 B 7 THR A 136 ILE A 142 1 O ARG A 138 N LEU A 87 SHEET 6 B 7 GLY A 179 PRO A 187 1 O ASN A 183 N ILE A 139 SHEET 7 B 7 ALA A 251 VAL A 254 1 O LEU A 252 N CYS A 186 CISPEP 1 ARG B -3 GLY B -2 0 -23.44 CISPEP 2 GLU B 200 HIS B 201 0 -2.03 SITE 1 AC1 23 GLY B 13 THR B 15 SER B 16 GLY B 17 SITE 2 AC1 23 ILE B 18 ARG B 38 GLY B 39 CYS B 62 SITE 3 AC1 23 ASP B 63 VAL B 64 ASN B 90 ALA B 143 SITE 4 AC1 23 TYR B 157 LYS B 161 PRO B 187 GLY B 188 SITE 5 AC1 23 VAL B 190 THR B 192 PRO B 193 MET B 194 SITE 6 AC1 23 EMO B 303 HOH B 328 HOH B 362 SITE 1 AC2 9 SER B 144 THR B 145 GLY B 146 GLN B 149 SITE 2 AC2 9 VAL B 151 TYR B 157 VAL B 198 LEU B 258 SITE 3 AC2 9 EMO B 303 SITE 1 AC3 10 SER B 144 TYR B 157 GLY B 188 PHE B 189 SITE 2 AC3 10 MET B 194 VAL B 198 ILE B 217 LEU B 258 SITE 3 AC3 10 NDP B 301 EMO B 302 SITE 1 AC4 31 GLY A 13 THR A 15 SER A 16 GLY A 17 SITE 2 AC4 31 ILE A 18 ALA A 37 ARG A 38 GLY A 39 SITE 3 AC4 31 CYS A 62 ASP A 63 VAL A 64 ASN A 90 SITE 4 AC4 31 ALA A 91 GLY A 92 ILE A 142 ALA A 143 SITE 5 AC4 31 TYR A 157 LYS A 161 PRO A 187 GLY A 188 SITE 6 AC4 31 VAL A 190 THR A 192 PRO A 193 MET A 194 SITE 7 AC4 31 EMO A 302 HOH A 305 HOH A 306 HOH A 362 SITE 8 AC4 31 HOH A 374 ARG B 51 HOH B 348 SITE 1 AC5 10 SER A 144 THR A 145 TYR A 157 GLY A 188 SITE 2 AC5 10 PHE A 189 VAL A 198 ILE A 217 LEU A 258 SITE 3 AC5 10 NDP A 301 EMO A 303 SITE 1 AC6 8 LEU A 94 SER A 144 THR A 145 GLY A 146 SITE 2 AC6 8 GLN A 149 VAL A 151 TYR A 157 EMO A 302 CRYST1 105.089 105.089 123.650 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009516 0.005494 0.000000 0.00000 SCALE2 0.000000 0.010988 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008087 0.00000