HEADER PROTEIN BINDING 14-APR-08 3CTW TITLE CRYSTAL STRUCTURE OF RCDA FROM CAULOBACTER CRESCENTUS CB15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RCDA; COMPND 3 CHAIN: B, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULOBACTER VIBRIOIDES; SOURCE 3 ORGANISM_TAXID: 155892; SOURCE 4 STRAIN: CB15; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.D.WILBUR,J.A.TAYLOR,R.R.KATHLEEN REVDAT 5 21-FEB-24 3CTW 1 REMARK REVDAT 4 06-JUN-18 3CTW 1 SOURCE REMARK REVDAT 3 25-OCT-17 3CTW 1 REMARK REVDAT 2 13-JUL-11 3CTW 1 VERSN REVDAT 1 14-JUL-09 3CTW 0 JRNL AUTH J.D.WILBUR,J.A.TAYLOR,R.R.KATHLEEN JRNL TITL CRYSTAL STRUCTURE OF RCDA YIELDS INSIGHTS INTO EFFICIENT JRNL TITL 2 CTRA PROTEOLYSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 10107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.276 REMARK 3 R VALUE (WORKING SET) : 0.274 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 477 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 620 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1866 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.811 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.413 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.321 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.563 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.891 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1938 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2597 ; 1.645 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 238 ;24.290 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;26.251 ;22.526 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 324 ;16.263 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.550 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 285 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1465 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1201 ; 0.272 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1891 ; 0.532 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 737 ; 0.820 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 706 ; 1.383 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 33 REMARK 3 ORIGIN FOR THE GROUP (A): 43.6580 7.6800 14.3030 REMARK 3 T TENSOR REMARK 3 T11: 0.5555 T22: 0.5256 REMARK 3 T33: 0.5291 T12: -0.2422 REMARK 3 T13: 0.0056 T23: 0.1221 REMARK 3 L TENSOR REMARK 3 L11: 12.3598 L22: 14.8512 REMARK 3 L33: 7.0321 L12: -3.9152 REMARK 3 L13: 3.6690 L23: 7.8213 REMARK 3 S TENSOR REMARK 3 S11: 0.4026 S12: 0.0869 S13: 0.6097 REMARK 3 S21: 1.5576 S22: -1.0945 S23: -3.3728 REMARK 3 S31: -1.2598 S32: 1.3972 S33: 0.6919 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 88 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3890 -9.8850 14.0870 REMARK 3 T TENSOR REMARK 3 T11: 0.3379 T22: 0.2600 REMARK 3 T33: 0.3657 T12: -0.0287 REMARK 3 T13: -0.0334 T23: -0.0674 REMARK 3 L TENSOR REMARK 3 L11: 4.2686 L22: 1.8257 REMARK 3 L33: 5.7019 L12: 1.3971 REMARK 3 L13: -0.3764 L23: 0.7880 REMARK 3 S TENSOR REMARK 3 S11: 0.1049 S12: 0.0256 S13: -0.1166 REMARK 3 S21: 0.0519 S22: -0.1026 S23: 0.4744 REMARK 3 S31: 0.1577 S32: -0.3986 S33: -0.0023 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 89 B 102 REMARK 3 ORIGIN FOR THE GROUP (A): 33.3960 8.1350 6.1060 REMARK 3 T TENSOR REMARK 3 T11: 0.6404 T22: 0.4361 REMARK 3 T33: 0.5809 T12: 0.0509 REMARK 3 T13: 0.0009 T23: 0.0698 REMARK 3 L TENSOR REMARK 3 L11: 18.1971 L22: 12.2929 REMARK 3 L33: 16.4267 L12: 3.6067 REMARK 3 L13: -9.0026 L23: -0.7535 REMARK 3 S TENSOR REMARK 3 S11: 0.1542 S12: -1.1613 S13: -0.4254 REMARK 3 S21: 1.0386 S22: -0.4421 S23: 1.6378 REMARK 3 S31: -1.8276 S32: -1.1446 S33: 0.2879 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 114 B 125 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9270 -11.2220 24.0870 REMARK 3 T TENSOR REMARK 3 T11: 0.2842 T22: 0.4214 REMARK 3 T33: 0.8331 T12: -0.1133 REMARK 3 T13: -0.0116 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 2.6771 L22: 22.1090 REMARK 3 L33: 10.2034 L12: 6.6233 REMARK 3 L13: 1.6741 L23: -3.0965 REMARK 3 S TENSOR REMARK 3 S11: -0.7140 S12: -1.7524 S13: 2.2920 REMARK 3 S21: 0.3909 S22: 0.6409 S23: 3.2827 REMARK 3 S31: 0.8396 S32: -1.3433 S33: 0.0731 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 126 B 147 REMARK 3 ORIGIN FOR THE GROUP (A): 32.2800 7.3780 17.2690 REMARK 3 T TENSOR REMARK 3 T11: 0.4899 T22: 0.1839 REMARK 3 T33: 0.5060 T12: 0.0630 REMARK 3 T13: 0.0001 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 4.3489 L22: 22.0290 REMARK 3 L33: 14.4846 L12: 8.3249 REMARK 3 L13: -0.9246 L23: -3.7058 REMARK 3 S TENSOR REMARK 3 S11: -0.2517 S12: 0.4569 S13: 1.0650 REMARK 3 S21: 1.2432 S22: 0.9090 S23: 1.4374 REMARK 3 S31: -1.4392 S32: -1.0535 S33: -0.6573 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 21 D 33 REMARK 3 ORIGIN FOR THE GROUP (A): 40.7850 -9.9950 -6.6390 REMARK 3 T TENSOR REMARK 3 T11: 0.8087 T22: 0.3433 REMARK 3 T33: 0.5273 T12: 0.1441 REMARK 3 T13: 0.0286 T23: 0.0858 REMARK 3 L TENSOR REMARK 3 L11: 9.4383 L22: 25.0845 REMARK 3 L33: 10.3623 L12: 3.9034 REMARK 3 L13: -3.1262 L23: 10.7214 REMARK 3 S TENSOR REMARK 3 S11: -0.3629 S12: 0.2099 S13: -1.2631 REMARK 3 S21: 0.7472 S22: -0.1504 S23: -2.3726 REMARK 3 S31: 2.5027 S32: 0.5227 S33: 0.5133 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 34 D 87 REMARK 3 ORIGIN FOR THE GROUP (A): 32.5650 11.5850 -6.8520 REMARK 3 T TENSOR REMARK 3 T11: 0.4384 T22: 0.2136 REMARK 3 T33: 0.3450 T12: -0.0112 REMARK 3 T13: 0.0320 T23: -0.0711 REMARK 3 L TENSOR REMARK 3 L11: 4.7785 L22: 6.5051 REMARK 3 L33: 4.5681 L12: -3.4104 REMARK 3 L13: 0.1716 L23: -1.7504 REMARK 3 S TENSOR REMARK 3 S11: 0.1162 S12: 0.0064 S13: 0.3406 REMARK 3 S21: 0.2160 S22: 0.0956 S23: 0.2787 REMARK 3 S31: -0.6502 S32: -0.2543 S33: -0.2119 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 88 D 103 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9320 -7.2900 1.5780 REMARK 3 T TENSOR REMARK 3 T11: 0.5499 T22: 0.3726 REMARK 3 T33: 0.5091 T12: -0.0425 REMARK 3 T13: -0.0118 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 7.5852 L22: 4.1891 REMARK 3 L33: 14.3913 L12: -3.8547 REMARK 3 L13: 3.9145 L23: -3.2190 REMARK 3 S TENSOR REMARK 3 S11: -0.2503 S12: 0.1188 S13: -0.5848 REMARK 3 S21: -0.0952 S22: 0.1364 S23: 0.3674 REMARK 3 S31: 0.6931 S32: -1.1341 S33: 0.1139 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 115 D 125 REMARK 3 ORIGIN FOR THE GROUP (A): 27.2070 14.9880 -16.6100 REMARK 3 T TENSOR REMARK 3 T11: 0.2726 T22: 0.4749 REMARK 3 T33: 0.5281 T12: 0.0511 REMARK 3 T13: 0.0067 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 55.3682 L22: 48.6304 REMARK 3 L33: 6.6354 L12: -13.9074 REMARK 3 L13: 18.3855 L23: -4.5252 REMARK 3 S TENSOR REMARK 3 S11: 0.3572 S12: 0.0214 S13: -2.7492 REMARK 3 S21: -0.8088 S22: 1.3783 S23: 2.8589 REMARK 3 S31: -0.2899 S32: -3.5433 S33: -1.7355 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 126 D 150 REMARK 3 ORIGIN FOR THE GROUP (A): 30.4110 -6.6540 -10.3840 REMARK 3 T TENSOR REMARK 3 T11: 0.4581 T22: 0.2077 REMARK 3 T33: 0.4894 T12: -0.1382 REMARK 3 T13: -0.0258 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 2.4877 L22: 15.4322 REMARK 3 L33: 9.8959 L12: -2.3289 REMARK 3 L13: -1.3558 L23: -8.8523 REMARK 3 S TENSOR REMARK 3 S11: -0.5996 S12: 0.2731 S13: -0.9987 REMARK 3 S21: -1.4048 S22: 1.3389 S23: 1.3355 REMARK 3 S31: 1.3785 S32: -1.2041 S33: -0.7393 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CTW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047203. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-07; NULL REMARK 200 TEMPERATURE (KELVIN) : NULL; NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS REMARK 200 BEAMLINE : 5.0.2; 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97957,1.01986,0.97972; 1.1 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC Q315; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10955 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.45800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES, 1.75M FORMATE, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.70950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.06425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.35475 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 465 VAL B 4 REMARK 465 ASN B 5 REMARK 465 ALA B 6 REMARK 465 PHE B 7 REMARK 465 ALA B 8 REMARK 465 ASP B 9 REMARK 465 THR B 10 REMARK 465 PRO B 11 REMARK 465 TRP B 12 REMARK 465 ARG B 13 REMARK 465 ALA B 14 REMARK 465 GLY B 15 REMARK 465 VAL B 16 REMARK 465 ARG B 103 REMARK 465 LEU B 104 REMARK 465 ALA B 105 REMARK 465 GLU B 106 REMARK 465 GLU B 107 REMARK 465 ALA B 108 REMARK 465 PRO B 109 REMARK 465 ALA B 110 REMARK 465 ASP B 111 REMARK 465 GLY B 112 REMARK 465 PRO B 113 REMARK 465 PRO B 148 REMARK 465 ASN B 149 REMARK 465 GLU B 150 REMARK 465 GLU B 151 REMARK 465 ALA B 152 REMARK 465 PRO B 153 REMARK 465 ARG B 154 REMARK 465 PRO B 155 REMARK 465 VAL B 156 REMARK 465 GLN B 157 REMARK 465 ASN B 158 REMARK 465 GLN B 159 REMARK 465 LEU B 160 REMARK 465 ASP B 161 REMARK 465 ARG B 162 REMARK 465 LEU B 163 REMARK 465 THR B 164 REMARK 465 ALA B 165 REMARK 465 ALA B 166 REMARK 465 PHE B 167 REMARK 465 GLY B 168 REMARK 465 GLY B 169 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 GLU D 3 REMARK 465 VAL D 4 REMARK 465 ASN D 5 REMARK 465 ALA D 6 REMARK 465 PHE D 7 REMARK 465 ALA D 8 REMARK 465 ASP D 9 REMARK 465 THR D 10 REMARK 465 PRO D 11 REMARK 465 TRP D 12 REMARK 465 ARG D 13 REMARK 465 ALA D 14 REMARK 465 GLY D 15 REMARK 465 VAL D 16 REMARK 465 ILE D 17 REMARK 465 GLN D 18 REMARK 465 ASP D 19 REMARK 465 PHE D 20 REMARK 465 LEU D 104 REMARK 465 ALA D 105 REMARK 465 GLU D 106 REMARK 465 GLU D 107 REMARK 465 ALA D 108 REMARK 465 PRO D 109 REMARK 465 ALA D 110 REMARK 465 ASP D 111 REMARK 465 GLY D 112 REMARK 465 PRO D 113 REMARK 465 ALA D 114 REMARK 465 GLU D 151 REMARK 465 ALA D 152 REMARK 465 PRO D 153 REMARK 465 ARG D 154 REMARK 465 PRO D 155 REMARK 465 VAL D 156 REMARK 465 GLN D 157 REMARK 465 ASN D 158 REMARK 465 GLN D 159 REMARK 465 LEU D 160 REMARK 465 ASP D 161 REMARK 465 ARG D 162 REMARK 465 LEU D 163 REMARK 465 THR D 164 REMARK 465 ALA D 165 REMARK 465 ALA D 166 REMARK 465 PHE D 167 REMARK 465 GLY D 168 REMARK 465 GLY D 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 17 CG1 CG2 CD1 REMARK 470 GLN B 18 CG CD OE1 NE2 REMARK 470 ASP B 19 CG OD1 OD2 REMARK 470 GLU B 24 CG CD OE1 OE2 REMARK 470 ARG B 88 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 142 CD NE CZ NH1 NH2 REMARK 470 SER B 147 OG REMARK 470 ARG D 22 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 24 CG CD OE1 OE2 REMARK 470 ARG D 57 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 103 CG CD NE CZ NH1 NH2 REMARK 470 VAL D 115 CG1 CG2 REMARK 470 ARG D 142 CD NE CZ NH1 NH2 REMARK 470 GLU D 146 CG CD OE1 OE2 REMARK 470 ASN D 149 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD2 TYR B 102 OD2 ASP B 140 1.84 REMARK 500 O ALA D 96 N CYS D 98 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA B 101 CB - CA - C ANGL. DEV. = 11.1 DEGREES REMARK 500 ALA D 99 CB - CA - C ANGL. DEV. = -15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 24 -57.31 66.49 REMARK 500 LEU B 25 -70.25 -91.89 REMARK 500 ALA B 97 0.58 137.62 REMARK 500 ALA B 101 -137.37 59.04 REMARK 500 TYR B 144 -34.39 -135.81 REMARK 500 SER D 23 47.40 31.36 REMARK 500 LEU D 25 -5.35 72.12 REMARK 500 ALA D 97 16.32 -31.60 REMARK 500 TYR D 102 -79.81 -125.21 REMARK 500 GLU D 117 108.82 -51.45 REMARK 500 SER D 147 -52.86 146.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN B 18 ASP B 19 -86.66 REMARK 500 ASP B 19 PHE B 20 -87.21 REMARK 500 ALA B 101 TYR B 102 143.47 REMARK 500 GLU B 146 SER B 147 -30.19 REMARK 500 VAL D 83 GLN D 84 132.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 172 DBREF 3CTW B 1 169 UNP Q9A3A9 Q9A3A9_CAUCR 1 169 DBREF 3CTW D 1 169 UNP Q9A3A9 Q9A3A9_CAUCR 1 169 SEQRES 1 B 169 MET THR GLU VAL ASN ALA PHE ALA ASP THR PRO TRP ARG SEQRES 2 B 169 ALA GLY VAL ILE GLN ASP PHE ALA ARG SER GLU LEU PHE SEQRES 3 B 169 ASP ARG THR PHE GLU GLU GLY MET GLN LEU VAL GLU GLU SEQRES 4 B 169 THR ALA ALA TYR LEU ASP GLY ALA GLY ARG HIS ASP SER SEQRES 5 B 169 LYS VAL LEU SER ARG ASN ALA ALA LEU GLY TYR ALA THR SEQRES 6 B 169 GLU SER MET ARG LEU THR THR ARG LEU MET GLN VAL ALA SEQRES 7 B 169 SER TRP LEU LEU VAL GLN ARG ALA VAL ARG GLU GLY GLU SEQRES 8 B 169 MET PRO PRO GLU ALA ALA CYS ALA GLU ALA TYR ARG LEU SEQRES 9 B 169 ALA GLU GLU ALA PRO ALA ASP GLY PRO ALA VAL GLU GLU SEQRES 10 B 169 LEU PRO PHE GLY LEU MET ASN LEU LEU GLN ARG SER GLU SEQRES 11 B 169 ARG LEU TYR GLU ARG VAL ARG HIS LEU ASP ARG ARG MET SEQRES 12 B 169 TYR VAL GLU SER PRO ASN GLU GLU ALA PRO ARG PRO VAL SEQRES 13 B 169 GLN ASN GLN LEU ASP ARG LEU THR ALA ALA PHE GLY GLY SEQRES 1 D 169 MET THR GLU VAL ASN ALA PHE ALA ASP THR PRO TRP ARG SEQRES 2 D 169 ALA GLY VAL ILE GLN ASP PHE ALA ARG SER GLU LEU PHE SEQRES 3 D 169 ASP ARG THR PHE GLU GLU GLY MET GLN LEU VAL GLU GLU SEQRES 4 D 169 THR ALA ALA TYR LEU ASP GLY ALA GLY ARG HIS ASP SER SEQRES 5 D 169 LYS VAL LEU SER ARG ASN ALA ALA LEU GLY TYR ALA THR SEQRES 6 D 169 GLU SER MET ARG LEU THR THR ARG LEU MET GLN VAL ALA SEQRES 7 D 169 SER TRP LEU LEU VAL GLN ARG ALA VAL ARG GLU GLY GLU SEQRES 8 D 169 MET PRO PRO GLU ALA ALA CYS ALA GLU ALA TYR ARG LEU SEQRES 9 D 169 ALA GLU GLU ALA PRO ALA ASP GLY PRO ALA VAL GLU GLU SEQRES 10 D 169 LEU PRO PHE GLY LEU MET ASN LEU LEU GLN ARG SER GLU SEQRES 11 D 169 ARG LEU TYR GLU ARG VAL ARG HIS LEU ASP ARG ARG MET SEQRES 12 D 169 TYR VAL GLU SER PRO ASN GLU GLU ALA PRO ARG PRO VAL SEQRES 13 D 169 GLN ASN GLN LEU ASP ARG LEU THR ALA ALA PHE GLY GLY HET EDO B 170 4 HET EDO B 171 4 HET EDO B 172 4 HET EDO B 173 4 HET EDO B 174 4 HET EDO D 170 4 HET EDO D 171 4 HET EDO D 172 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 8(C2 H6 O2) FORMUL 11 HOH *6(H2 O) HELIX 1 1 LEU B 25 ASP B 45 1 21 HELIX 2 2 GLY B 46 LYS B 53 1 8 HELIX 3 3 SER B 56 GLU B 89 1 34 HELIX 4 4 PRO B 119 VAL B 145 1 27 HELIX 5 5 PHE D 26 ASP D 45 1 20 HELIX 6 6 GLY D 46 VAL D 54 1 9 HELIX 7 7 SER D 56 GLU D 89 1 34 HELIX 8 8 PRO D 119 VAL D 145 1 27 CISPEP 1 ASN D 149 GLU D 150 0 2.42 SITE 1 AC1 3 GLN B 76 ALA B 101 MET D 75 SITE 1 AC2 1 ARG B 73 SITE 1 AC3 2 ASP B 27 PHE B 30 SITE 1 AC4 5 GLY B 121 ASN B 124 LEU B 125 ARG B 128 SITE 2 AC4 5 GLU D 39 SITE 1 AC5 5 GLU B 39 GLY D 121 ASN D 124 LEU D 125 SITE 2 AC5 5 ARG D 128 SITE 1 AC6 2 ARG D 73 TYR D 133 CRYST1 75.458 75.458 81.419 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013252 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012282 0.00000