HEADER TRANSFERASE 15-APR-08 3CU0 TITLE HUMAN BETA 1,3-GLUCURONYLTRANSFERASE I (GLCAT-I) IN COMPLEX WITH UDP TITLE 2 AND GAL-GAL(6-SO4)-XYL(2-PO4)-O-SER COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA- COMPND 3 GLUCURONOSYLTRANSFERASE 3; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: CATALYTIC DOMAIN, UNP RESIDUES 76-335; COMPND 6 SYNONYM: BETA-1,3-GLUCURONYLTRANSFERASE 3, GLUCURONOSYLTRANSFERASE-I, COMPND 7 GLCAT-I, UDP-GLCUA:GAL BETA-1,3-GAL-R GLUCURONYLTRANSFERASE, GLCUAT- COMPND 8 I; COMPND 9 EC: 2.4.1.135; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: B3GAT3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS GLCAT-I, GLYCOSYLTRANSFERASE, HEPARAN SULFATE BIOSYNTHESIS, KEYWDS 2 GLYCOPROTEIN, GOLGI APPARATUS, MANGANESE, MEMBRANE, METAL-BINDING, KEYWDS 3 SIGNAL-ANCHOR, TRANSMEMBRANE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.TONE,L.C.PEDERSEN,T.YAMAMOTO,H.KITAGAWA,J.NISHIHARA-SHIMIZU, AUTHOR 2 J.TAMURA,M.NEGISHI,K.SUGAHARA REVDAT 5 30-AUG-23 3CU0 1 HETSYN REVDAT 4 29-JUL-20 3CU0 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 24-FEB-09 3CU0 1 VERSN REVDAT 2 24-JUN-08 3CU0 1 JRNL REVDAT 1 06-MAY-08 3CU0 0 JRNL AUTH Y.TONE,L.C.PEDERSEN,T.YAMAMOTO,T.IZUMIKAWA,H.KITAGAWA, JRNL AUTH 2 J.NISHIHARA,J.TAMURA,M.NEGISHI,K.SUGAHARA JRNL TITL 2-O-PHOSPHORYLATION OF XYLOSE AND 6-O-SULFATION OF GALACTOSE JRNL TITL 2 IN THE PROTEIN LINKAGE REGION OF GLYCOSAMINOGLYCANS JRNL TITL 3 INFLUENCE THE GLUCURONYLTRANSFERASE-I ACTIVITY INVOLVED IN JRNL TITL 4 THE LINKAGE REGION SYNTHESIS. JRNL REF J.BIOL.CHEM. V. 283 16801 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18400750 JRNL DOI 10.1074/JBC.M709556200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 229858.310 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 43640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2194 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6408 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 296 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3810 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 281 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.25000 REMARK 3 B22 (A**2) : -1.49000 REMARK 3 B33 (A**2) : -5.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.900 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.320 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.080 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.940 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.860 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 47.90 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 4 : UDP2.PAR REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3CU0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047207. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44763 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.59000 REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35300 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1FGG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM NACL 10MM MNCL2 10MM UDPGLCUA .1M REMARK 280 MES PH 6.0 21% MMEPEG2000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.19950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 55 REMARK 465 GLY A 56 REMARK 465 SER A 57 REMARK 465 SER A 58 REMARK 465 HIS A 59 REMARK 465 HIS A 60 REMARK 465 HIS A 61 REMARK 465 HIS A 62 REMARK 465 HIS A 63 REMARK 465 HIS A 64 REMARK 465 SER A 65 REMARK 465 SER A 66 REMARK 465 GLY A 67 REMARK 465 LEU A 68 REMARK 465 VAL A 69 REMARK 465 PRO A 70 REMARK 465 ARG A 71 REMARK 465 GLY A 72 REMARK 465 SER A 73 REMARK 465 HIS A 74 REMARK 465 LYS A 141 REMARK 465 ALA A 142 REMARK 465 GLN A 143 REMARK 465 ARG A 144 REMARK 465 LEU A 145 REMARK 465 ARG A 146 REMARK 465 GLU A 147 REMARK 465 GLY A 148 REMARK 465 GLU A 149 REMARK 465 PRO A 150 REMARK 465 GLY A 151 REMARK 465 MET B 55 REMARK 465 GLY B 56 REMARK 465 SER B 57 REMARK 465 SER B 58 REMARK 465 HIS B 59 REMARK 465 HIS B 60 REMARK 465 HIS B 61 REMARK 465 HIS B 62 REMARK 465 HIS B 63 REMARK 465 HIS B 64 REMARK 465 SER B 65 REMARK 465 SER B 66 REMARK 465 GLY B 67 REMARK 465 LEU B 68 REMARK 465 VAL B 69 REMARK 465 PRO B 70 REMARK 465 ARG B 71 REMARK 465 GLY B 72 REMARK 465 SER B 73 REMARK 465 HIS B 74 REMARK 465 LYS B 141 REMARK 465 ALA B 142 REMARK 465 GLN B 143 REMARK 465 ARG B 144 REMARK 465 LEU B 145 REMARK 465 ARG B 146 REMARK 465 GLU B 147 REMARK 465 GLY B 148 REMARK 465 GLU B 149 REMARK 465 PRO B 150 REMARK 465 GLY B 151 REMARK 465 TRP B 152 REMARK 465 VAL B 153 REMARK 465 HIS B 154 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 VAL A 153 CG1 CG2 REMARK 470 HIS A 154 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 GLN A 187 CG CD OE1 NE2 REMARK 470 ARG A 211 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 233 CG OD1 OD2 REMARK 470 ARG A 277 NH1 NH2 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 GLN A 323 CG CD OE1 NE2 REMARK 470 ARG A 324 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 115 CG CD OE1 OE2 REMARK 470 GLU B 178 CG CD OE1 OE2 REMARK 470 LYS B 179 CG CD CE NZ REMARK 470 GLN B 187 CG CD OE1 NE2 REMARK 470 GLN B 232 CG CD OE1 NE2 REMARK 470 ASN B 268 CG OD1 ND2 REMARK 470 ARG B 277 NH1 NH2 REMARK 470 LYS B 315 CG CD CE NZ REMARK 470 LYS B 317 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 277 NE ARG A 277 CZ 0.165 REMARK 500 ARG B 277 NE ARG B 277 CZ 0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 277 CD - NE - CZ ANGL. DEV. = -11.9 DEGREES REMARK 500 PRO B 245 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG B 277 CD - NE - CZ ANGL. DEV. = -11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 154 68.19 -109.20 REMARK 500 ALA A 242 -46.80 -153.85 REMARK 500 PRO A 245 -5.75 -59.37 REMARK 500 ASP A 330 109.52 -50.41 REMARK 500 TRP B 209 45.25 -92.18 REMARK 500 ALA B 242 -54.61 -138.75 REMARK 500 GLU B 244 83.51 22.75 REMARK 500 PRO B 245 1.50 -69.09 REMARK 500 LYS B 266 70.41 -112.69 REMARK 500 ARG B 297 -164.25 -126.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 196 OD1 REMARK 620 2 ASP A 196 OD2 59.2 REMARK 620 3 UDP A 501 O2A 85.4 95.9 REMARK 620 4 UDP A 501 O3B 159.5 103.1 86.5 REMARK 620 5 HOH A 504 O 88.9 83.0 174.0 99.5 REMARK 620 6 HOH A 505 O 99.0 155.2 93.5 100.3 85.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 504 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 UDP A 503 O2A REMARK 620 2 UDP A 503 O3B 87.7 REMARK 620 3 ASP B 196 OD1 87.2 108.5 REMARK 620 4 ASP B 196 OD2 87.4 165.5 57.6 REMARK 620 5 HOH B 505 O 173.0 98.9 88.7 85.7 REMARK 620 6 HOH B 506 O 93.9 95.5 156.0 98.5 87.5 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FGG RELATED DB: PDB REMARK 900 RELATED ID: 1KWS RELATED DB: PDB DBREF 3CU0 A 76 335 UNP O94766 B3GA3_HUMAN 76 335 DBREF 3CU0 B 76 335 UNP O94766 B3GA3_HUMAN 76 335 SEQADV 3CU0 MET A 55 UNP O94766 EXPRESSION TAG SEQADV 3CU0 GLY A 56 UNP O94766 EXPRESSION TAG SEQADV 3CU0 SER A 57 UNP O94766 EXPRESSION TAG SEQADV 3CU0 SER A 58 UNP O94766 EXPRESSION TAG SEQADV 3CU0 HIS A 59 UNP O94766 EXPRESSION TAG SEQADV 3CU0 HIS A 60 UNP O94766 EXPRESSION TAG SEQADV 3CU0 HIS A 61 UNP O94766 EXPRESSION TAG SEQADV 3CU0 HIS A 62 UNP O94766 EXPRESSION TAG SEQADV 3CU0 HIS A 63 UNP O94766 EXPRESSION TAG SEQADV 3CU0 HIS A 64 UNP O94766 EXPRESSION TAG SEQADV 3CU0 SER A 65 UNP O94766 EXPRESSION TAG SEQADV 3CU0 SER A 66 UNP O94766 EXPRESSION TAG SEQADV 3CU0 GLY A 67 UNP O94766 EXPRESSION TAG SEQADV 3CU0 LEU A 68 UNP O94766 EXPRESSION TAG SEQADV 3CU0 VAL A 69 UNP O94766 EXPRESSION TAG SEQADV 3CU0 PRO A 70 UNP O94766 EXPRESSION TAG SEQADV 3CU0 ARG A 71 UNP O94766 EXPRESSION TAG SEQADV 3CU0 GLY A 72 UNP O94766 EXPRESSION TAG SEQADV 3CU0 SER A 73 UNP O94766 EXPRESSION TAG SEQADV 3CU0 HIS A 74 UNP O94766 EXPRESSION TAG SEQADV 3CU0 MET A 75 UNP O94766 EXPRESSION TAG SEQADV 3CU0 MET B 55 UNP O94766 EXPRESSION TAG SEQADV 3CU0 GLY B 56 UNP O94766 EXPRESSION TAG SEQADV 3CU0 SER B 57 UNP O94766 EXPRESSION TAG SEQADV 3CU0 SER B 58 UNP O94766 EXPRESSION TAG SEQADV 3CU0 HIS B 59 UNP O94766 EXPRESSION TAG SEQADV 3CU0 HIS B 60 UNP O94766 EXPRESSION TAG SEQADV 3CU0 HIS B 61 UNP O94766 EXPRESSION TAG SEQADV 3CU0 HIS B 62 UNP O94766 EXPRESSION TAG SEQADV 3CU0 HIS B 63 UNP O94766 EXPRESSION TAG SEQADV 3CU0 HIS B 64 UNP O94766 EXPRESSION TAG SEQADV 3CU0 SER B 65 UNP O94766 EXPRESSION TAG SEQADV 3CU0 SER B 66 UNP O94766 EXPRESSION TAG SEQADV 3CU0 GLY B 67 UNP O94766 EXPRESSION TAG SEQADV 3CU0 LEU B 68 UNP O94766 EXPRESSION TAG SEQADV 3CU0 VAL B 69 UNP O94766 EXPRESSION TAG SEQADV 3CU0 PRO B 70 UNP O94766 EXPRESSION TAG SEQADV 3CU0 ARG B 71 UNP O94766 EXPRESSION TAG SEQADV 3CU0 GLY B 72 UNP O94766 EXPRESSION TAG SEQADV 3CU0 SER B 73 UNP O94766 EXPRESSION TAG SEQADV 3CU0 HIS B 74 UNP O94766 EXPRESSION TAG SEQADV 3CU0 MET B 75 UNP O94766 EXPRESSION TAG SEQRES 1 A 281 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 281 LEU VAL PRO ARG GLY SER HIS MET THR ILE TYR VAL VAL SEQRES 3 A 281 THR PRO THR TYR ALA ARG LEU VAL GLN LYS ALA GLU LEU SEQRES 4 A 281 VAL ARG LEU SER GLN THR LEU SER LEU VAL PRO ARG LEU SEQRES 5 A 281 HIS TRP LEU LEU VAL GLU ASP ALA GLU GLY PRO THR PRO SEQRES 6 A 281 LEU VAL SER GLY LEU LEU ALA ALA SER GLY LEU LEU PHE SEQRES 7 A 281 THR HIS LEU VAL VAL LEU THR PRO LYS ALA GLN ARG LEU SEQRES 8 A 281 ARG GLU GLY GLU PRO GLY TRP VAL HIS PRO ARG GLY VAL SEQRES 9 A 281 GLU GLN ARG ASN LYS ALA LEU ASP TRP LEU ARG GLY ARG SEQRES 10 A 281 GLY GLY ALA VAL GLY GLY GLU LYS ASP PRO PRO PRO PRO SEQRES 11 A 281 GLY THR GLN GLY VAL VAL TYR PHE ALA ASP ASP ASP ASN SEQRES 12 A 281 THR TYR SER ARG GLU LEU PHE GLU GLU MET ARG TRP THR SEQRES 13 A 281 ARG GLY VAL SER VAL TRP PRO VAL GLY LEU VAL GLY GLY SEQRES 14 A 281 LEU ARG PHE GLU GLY PRO GLN VAL GLN ASP GLY ARG VAL SEQRES 15 A 281 VAL GLY PHE HIS THR ALA TRP GLU PRO SER ARG PRO PHE SEQRES 16 A 281 PRO VAL ASP MET ALA GLY PHE ALA VAL ALA LEU PRO LEU SEQRES 17 A 281 LEU LEU ASP LYS PRO ASN ALA GLN PHE ASP SER THR ALA SEQRES 18 A 281 PRO ARG GLY HIS LEU GLU SER SER LEU LEU SER HIS LEU SEQRES 19 A 281 VAL ASP PRO LYS ASP LEU GLU PRO ARG ALA ALA ASN CYS SEQRES 20 A 281 THR ARG VAL LEU VAL TRP HIS THR ARG THR GLU LYS PRO SEQRES 21 A 281 LYS MET LYS GLN GLU GLU GLN LEU GLN ARG GLN GLY ARG SEQRES 22 A 281 GLY SER ASP PRO ALA ILE GLU VAL SEQRES 1 B 281 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 281 LEU VAL PRO ARG GLY SER HIS MET THR ILE TYR VAL VAL SEQRES 3 B 281 THR PRO THR TYR ALA ARG LEU VAL GLN LYS ALA GLU LEU SEQRES 4 B 281 VAL ARG LEU SER GLN THR LEU SER LEU VAL PRO ARG LEU SEQRES 5 B 281 HIS TRP LEU LEU VAL GLU ASP ALA GLU GLY PRO THR PRO SEQRES 6 B 281 LEU VAL SER GLY LEU LEU ALA ALA SER GLY LEU LEU PHE SEQRES 7 B 281 THR HIS LEU VAL VAL LEU THR PRO LYS ALA GLN ARG LEU SEQRES 8 B 281 ARG GLU GLY GLU PRO GLY TRP VAL HIS PRO ARG GLY VAL SEQRES 9 B 281 GLU GLN ARG ASN LYS ALA LEU ASP TRP LEU ARG GLY ARG SEQRES 10 B 281 GLY GLY ALA VAL GLY GLY GLU LYS ASP PRO PRO PRO PRO SEQRES 11 B 281 GLY THR GLN GLY VAL VAL TYR PHE ALA ASP ASP ASP ASN SEQRES 12 B 281 THR TYR SER ARG GLU LEU PHE GLU GLU MET ARG TRP THR SEQRES 13 B 281 ARG GLY VAL SER VAL TRP PRO VAL GLY LEU VAL GLY GLY SEQRES 14 B 281 LEU ARG PHE GLU GLY PRO GLN VAL GLN ASP GLY ARG VAL SEQRES 15 B 281 VAL GLY PHE HIS THR ALA TRP GLU PRO SER ARG PRO PHE SEQRES 16 B 281 PRO VAL ASP MET ALA GLY PHE ALA VAL ALA LEU PRO LEU SEQRES 17 B 281 LEU LEU ASP LYS PRO ASN ALA GLN PHE ASP SER THR ALA SEQRES 18 B 281 PRO ARG GLY HIS LEU GLU SER SER LEU LEU SER HIS LEU SEQRES 19 B 281 VAL ASP PRO LYS ASP LEU GLU PRO ARG ALA ALA ASN CYS SEQRES 20 B 281 THR ARG VAL LEU VAL TRP HIS THR ARG THR GLU LYS PRO SEQRES 21 B 281 LYS MET LYS GLN GLU GLU GLN LEU GLN ARG GLN GLY ARG SEQRES 22 B 281 GLY SER ASP PRO ALA ILE GLU VAL HET GAL C 1 11 HET GAL C 2 11 HET GAL D 1 11 HET GAL D 2 11 HET MN A 502 1 HET SO4 A 3 5 HET UDP A 501 25 HET UDP A 503 25 HET SO4 B 3 5 HET MN B 504 1 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM UDP URIDINE-5'-DIPHOSPHATE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 3 GAL 4(C6 H12 O6) FORMUL 5 MN 2(MN 2+) FORMUL 6 SO4 2(O4 S 2-) FORMUL 7 UDP 2(C9 H14 N2 O12 P2) FORMUL 11 HOH *281(H2 O) HELIX 1 1 VAL A 88 SER A 101 1 14 HELIX 2 2 THR A 118 GLY A 129 1 12 HELIX 3 3 GLY A 157 ARG A 169 1 13 HELIX 4 4 SER A 200 ARG A 208 1 9 HELIX 5 5 ASP A 252 ALA A 254 5 3 HELIX 6 6 LEU A 260 LYS A 266 1 7 HELIX 7 7 HIS A 279 SER A 286 1 8 HELIX 8 8 ASP A 290 LEU A 294 5 5 HELIX 9 9 ARG A 297 THR A 302 1 6 HELIX 10 10 MET A 316 ARG A 324 1 9 HELIX 11 11 VAL B 88 SER B 101 1 14 HELIX 12 12 THR B 118 GLY B 129 1 12 HELIX 13 13 GLY B 157 ARG B 169 1 13 HELIX 14 14 SER B 200 ARG B 208 1 9 HELIX 15 15 ASP B 252 ALA B 254 5 3 HELIX 16 16 LEU B 260 LYS B 266 1 7 HELIX 17 17 HIS B 279 VAL B 289 1 11 HELIX 18 18 ASP B 290 LEU B 294 5 5 HELIX 19 19 ARG B 297 THR B 302 1 6 HELIX 20 20 MET B 316 GLN B 325 1 10 SHEET 1 A 8 ALA A 174 GLY A 177 0 SHEET 2 A 8 LEU A 131 VAL A 136 -1 N HIS A 134 O GLY A 176 SHEET 3 A 8 LEU A 106 GLU A 112 1 N LEU A 110 O LEU A 135 SHEET 4 A 8 THR A 76 THR A 83 1 N ILE A 77 O HIS A 107 SHEET 5 A 8 GLY A 188 PHE A 192 1 O TYR A 191 N VAL A 80 SHEET 6 A 8 PHE A 256 ALA A 259 -1 O VAL A 258 N VAL A 190 SHEET 7 A 8 VAL A 213 VAL A 215 -1 N SER A 214 O ALA A 257 SHEET 8 A 8 GLU A 295 PRO A 296 1 O GLU A 295 N VAL A 213 SHEET 1 B 2 THR A 198 TYR A 199 0 SHEET 2 B 2 VAL A 306 TRP A 307 -1 O TRP A 307 N THR A 198 SHEET 1 C 3 VAL A 218 VAL A 221 0 SHEET 2 C 3 LEU A 224 GLN A 232 -1 O ARG A 225 N LEU A 220 SHEET 3 C 3 ARG A 235 HIS A 240 -1 O HIS A 240 N GLY A 228 SHEET 1 D 8 GLY B 176 GLY B 177 0 SHEET 2 D 8 LEU B 131 VAL B 136 -1 N HIS B 134 O GLY B 176 SHEET 3 D 8 LEU B 106 GLU B 112 1 N TRP B 108 O LEU B 131 SHEET 4 D 8 ILE B 77 THR B 83 1 N VAL B 79 O LEU B 109 SHEET 5 D 8 VAL B 189 PHE B 192 1 O VAL B 189 N TYR B 78 SHEET 6 D 8 PHE B 256 ALA B 259 -1 O VAL B 258 N VAL B 190 SHEET 7 D 8 VAL B 213 VAL B 215 -1 N SER B 214 O ALA B 257 SHEET 8 D 8 GLU B 295 PRO B 296 1 O GLU B 295 N VAL B 213 SHEET 1 E 2 THR B 198 TYR B 199 0 SHEET 2 E 2 VAL B 306 TRP B 307 -1 O TRP B 307 N THR B 198 SHEET 1 F 3 VAL B 218 VAL B 221 0 SHEET 2 F 3 LEU B 224 GLN B 232 -1 O ARG B 225 N LEU B 220 SHEET 3 F 3 ARG B 235 HIS B 240 -1 O GLY B 238 N GLN B 230 LINK O1 SO4 A 3 C6 GAL C 1 1555 1555 1.45 LINK O1 SO4 B 3 C6 GAL D 1 1555 1555 1.44 LINK O3 GAL C 1 C1 GAL C 2 1555 1555 1.38 LINK O3 GAL D 1 C1 GAL D 2 1555 1555 1.39 LINK OD1 ASP A 196 MN MN A 502 1555 1555 2.26 LINK OD2 ASP A 196 MN MN A 502 1555 1555 2.18 LINK O2A UDP A 501 MN MN A 502 1555 1555 2.27 LINK O3B UDP A 501 MN MN A 502 1555 1555 2.29 LINK MN MN A 502 O HOH A 504 1555 1555 2.25 LINK MN MN A 502 O HOH A 505 1555 1555 2.32 LINK O2A UDP A 503 MN MN B 504 1555 1555 2.33 LINK O3B UDP A 503 MN MN B 504 1555 1555 2.08 LINK OD1 ASP B 196 MN MN B 504 1555 1555 2.21 LINK OD2 ASP B 196 MN MN B 504 1555 1555 2.34 LINK MN MN B 504 O HOH B 505 1555 1555 2.24 LINK MN MN B 504 O HOH B 506 1555 1555 2.28 CRYST1 57.047 48.399 103.708 90.00 92.40 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017529 0.000000 0.000735 0.00000 SCALE2 0.000000 0.020662 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009651 0.00000