HEADER ISOMERASE 15-APR-08 3CU2 TITLE CRYSTAL STRUCTURE OF RIBULOSE-5-PHOSPHATE 3-EPIMERASE (YP_718263.1) TITLE 2 FROM HAEMOPHILUS SOMNUS 129PT AT 1.91 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBULOSE-5-PHOSPHATE 3-EPIMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.1.3.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS SOMNUS; SOURCE 3 ORGANISM_TAXID: 205914; SOURCE 4 STRAIN: 129PT; SOURCE 5 GENE: YP_718263.1, RPE, HS_0057; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_718263.1, RIBULOSE-5-PHOSPHATE 3-EPIMERASE, RIBULOSE-PHOSPHATE 3 KEYWDS 2 EPIMERASE FAMILY, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3CU2 1 REMARK SEQADV LINK REVDAT 5 24-JUL-19 3CU2 1 REMARK LINK REVDAT 4 25-OCT-17 3CU2 1 REMARK REVDAT 3 13-JUL-11 3CU2 1 VERSN REVDAT 2 24-FEB-09 3CU2 1 VERSN REVDAT 1 29-APR-08 3CU2 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF RIBULOSE-5-PHOSPHATE 3-EPIMERASE JRNL TITL 2 (YP_718263.1) FROM HAEMOPHILUS SOMNUS 129PT AT 1.91 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 46156 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2335 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3193 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 186 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3693 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 425 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.46000 REMARK 3 B22 (A**2) : 0.46000 REMARK 3 B33 (A**2) : -0.68000 REMARK 3 B12 (A**2) : 0.23000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.926 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3845 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2519 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5233 ; 1.611 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6234 ; 1.101 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 484 ; 5.515 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;39.868 ;25.696 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 693 ;11.590 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;10.886 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 622 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4220 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 706 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2391 ; 2.032 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 966 ; 0.583 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3879 ; 3.288 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1454 ; 4.969 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1354 ; 7.008 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.80 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 3. NI IONS ARE MODELED IN A PUTATIVE ACTIVE SITE BASED ON AN REMARK 3 X-RAY FLUORESCENCE SCAN FOR METAL, ANOMALOUS DIFFERENCE REMARK 3 FOURIERS, AND COORDINATION GEOMETRY. REMARK 3 4. CA IONS FROM THE CRYSTALLIZATION CONDITIONS AND MRD REMARK 3 MOLECULES FROM CRYO CONDITION ARE MODELED IN THE STRUCTURE. REMARK 4 REMARK 4 3CU2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047209. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.17 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97922, 0.97840 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46203 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 28.916 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.76400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 16.0% PEG 8000, 0.167M REMARK 280 CALCIUM ACETATE, 0.1M MES PH 6.17, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.72000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.44000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 93.44000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.72000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION REMARK 300 STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 236 REMARK 465 GLY B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 38 CD OE1 NE2 REMARK 470 ARG A 78 NE CZ NH1 NH2 REMARK 470 ASN A 121 OD1 ND2 REMARK 470 GLN A 122 OE1 NE2 REMARK 470 ARG A 183 NE CZ NH1 NH2 REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 GLN A 205 CG CD OE1 NE2 REMARK 470 ILE A 235 CG1 CG2 CD1 REMARK 470 GLN B 9 CG CD OE1 NE2 REMARK 470 LYS B 14 CE NZ REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 ASN B 121 OD1 ND2 REMARK 470 GLN B 122 CG CD OE1 NE2 REMARK 470 VAL B 123 CG1 CG2 REMARK 470 LYS B 163 CE NZ REMARK 470 LYS B 178 CD CE NZ REMARK 470 GLU B 198 CD OE1 OE2 REMARK 470 GLN B 205 CG CD OE1 NE2 REMARK 470 THR B 207 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 56 -86.45 -108.37 REMARK 500 ALA A 120 -107.90 60.00 REMARK 500 ASN A 160 -5.19 -141.83 REMARK 500 SER A 194 55.13 39.27 REMARK 500 THR A 207 8.10 52.70 REMARK 500 THR B 56 -76.04 -109.91 REMARK 500 ALA B 120 -125.67 70.33 REMARK 500 GLN B 205 34.79 -65.53 REMARK 500 THR B 207 -61.79 83.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 238 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 43 NE2 REMARK 620 2 ASP A 45 OD1 91.5 REMARK 620 3 HIS A 74 ND1 102.8 91.2 REMARK 620 4 ASP A 192 OD2 98.0 170.0 89.4 REMARK 620 5 HOH A 247 O 93.2 88.8 164.0 87.9 REMARK 620 6 HOH A 272 O 167.8 86.9 89.3 83.2 74.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 237 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 220 O REMARK 620 2 HOH A 295 O 106.6 REMARK 620 3 HOH A 305 O 71.8 79.9 REMARK 620 4 HOH A 345 O 78.9 74.7 133.3 REMARK 620 5 HOH A 388 O 83.1 169.4 107.7 103.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 238 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 43 NE2 REMARK 620 2 ASP B 45 OD1 93.3 REMARK 620 3 HIS B 74 ND1 109.6 90.5 REMARK 620 4 ASP B 192 OD2 93.7 171.7 91.5 REMARK 620 5 HOH B 276 O 86.7 87.3 163.6 88.5 REMARK 620 6 HOH B 302 O 159.4 87.9 90.9 84.0 72.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 237 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 220 O REMARK 620 2 HOH B 313 O 98.0 REMARK 620 3 HOH B 354 O 77.9 87.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD B 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 239 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 377798 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3CU2 A 1 236 UNP Q0I165 Q0I165_HAES1 1 236 DBREF 3CU2 B 1 236 UNP Q0I165 Q0I165_HAES1 1 236 SEQADV 3CU2 GLY A 0 UNP Q0I165 EXPRESSION TAG SEQADV 3CU2 GLY B 0 UNP Q0I165 EXPRESSION TAG SEQRES 1 A 237 GLY MSE SER LYS LEU SER LEU ILE GLN GLN LEU LYS GLN SEQRES 2 A 237 GLN LYS LEU SER VAL GLY ILE LEU SER ALA ASN TRP LEU SEQRES 3 A 237 GLN LEU ASN GLU GLU VAL THR THR LEU LEU GLU ASN GLN SEQRES 4 A 237 ILE ASN VAL LEU HIS PHE ASP ILE ALA ASP GLY GLN PHE SEQRES 5 A 237 SER SER LEU PHE THR VAL GLY ALA ILE GLY ILE LYS TYR SEQRES 6 A 237 PHE PRO THR HIS CYS PHE LYS ASP VAL HIS LEU MSE VAL SEQRES 7 A 237 ARG ASN GLN LEU GLU VAL ALA LYS ALA VAL VAL ALA ASN SEQRES 8 A 237 GLY ALA ASN LEU VAL THR LEU GLN LEU GLU GLN TYR HIS SEQRES 9 A 237 ASP PHE ALA LEU THR ILE GLU TRP LEU ALA LYS GLN LYS SEQRES 10 A 237 THR THR TYR ALA ASN GLN VAL TYR PRO VAL LEU ILE GLY SEQRES 11 A 237 ALA CYS LEU CYS PRO GLU THR PRO ILE SER GLU LEU GLU SEQRES 12 A 237 PRO TYR LEU ASP GLN ILE ASP VAL ILE GLN LEU LEU THR SEQRES 13 A 237 LEU ASP PRO ARG ASN GLY THR LYS TYR PRO SER GLU LEU SEQRES 14 A 237 ILE LEU ASP ARG VAL ILE GLN VAL GLU LYS ARG LEU GLY SEQRES 15 A 237 ASN ARG ARG VAL GLU LYS LEU ILE ASN ILE ASP GLY SER SEQRES 16 A 237 MSE THR LEU GLU LEU ALA LYS TYR PHE LYS GLN GLY THR SEQRES 17 A 237 HIS GLN ILE ASP TRP LEU VAL SER GLY SER ALA LEU PHE SEQRES 18 A 237 SER GLY GLU LEU LYS THR ASN LEU LYS VAL TRP LYS SER SEQRES 19 A 237 SER ILE MSE SEQRES 1 B 237 GLY MSE SER LYS LEU SER LEU ILE GLN GLN LEU LYS GLN SEQRES 2 B 237 GLN LYS LEU SER VAL GLY ILE LEU SER ALA ASN TRP LEU SEQRES 3 B 237 GLN LEU ASN GLU GLU VAL THR THR LEU LEU GLU ASN GLN SEQRES 4 B 237 ILE ASN VAL LEU HIS PHE ASP ILE ALA ASP GLY GLN PHE SEQRES 5 B 237 SER SER LEU PHE THR VAL GLY ALA ILE GLY ILE LYS TYR SEQRES 6 B 237 PHE PRO THR HIS CYS PHE LYS ASP VAL HIS LEU MSE VAL SEQRES 7 B 237 ARG ASN GLN LEU GLU VAL ALA LYS ALA VAL VAL ALA ASN SEQRES 8 B 237 GLY ALA ASN LEU VAL THR LEU GLN LEU GLU GLN TYR HIS SEQRES 9 B 237 ASP PHE ALA LEU THR ILE GLU TRP LEU ALA LYS GLN LYS SEQRES 10 B 237 THR THR TYR ALA ASN GLN VAL TYR PRO VAL LEU ILE GLY SEQRES 11 B 237 ALA CYS LEU CYS PRO GLU THR PRO ILE SER GLU LEU GLU SEQRES 12 B 237 PRO TYR LEU ASP GLN ILE ASP VAL ILE GLN LEU LEU THR SEQRES 13 B 237 LEU ASP PRO ARG ASN GLY THR LYS TYR PRO SER GLU LEU SEQRES 14 B 237 ILE LEU ASP ARG VAL ILE GLN VAL GLU LYS ARG LEU GLY SEQRES 15 B 237 ASN ARG ARG VAL GLU LYS LEU ILE ASN ILE ASP GLY SER SEQRES 16 B 237 MSE THR LEU GLU LEU ALA LYS TYR PHE LYS GLN GLY THR SEQRES 17 B 237 HIS GLN ILE ASP TRP LEU VAL SER GLY SER ALA LEU PHE SEQRES 18 B 237 SER GLY GLU LEU LYS THR ASN LEU LYS VAL TRP LYS SER SEQRES 19 B 237 SER ILE MSE MODRES 3CU2 MSE A 1 MET SELENOMETHIONINE MODRES 3CU2 MSE A 76 MET SELENOMETHIONINE MODRES 3CU2 MSE A 195 MET SELENOMETHIONINE MODRES 3CU2 MSE B 1 MET SELENOMETHIONINE MODRES 3CU2 MSE B 76 MET SELENOMETHIONINE MODRES 3CU2 MSE B 195 MET SELENOMETHIONINE MODRES 3CU2 MSE B 236 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 76 8 HET MSE A 195 8 HET MSE B 1 8 HET MSE B 76 8 HET MSE B 195 8 HET MSE B 236 9 HET CA A 237 1 HET NI A 238 1 HET MRD A 239 8 HET CA B 237 1 HET NI B 238 1 HET MRD B 239 8 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM NI NICKEL (II) ION HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 3 CA 2(CA 2+) FORMUL 4 NI 2(NI 2+) FORMUL 5 MRD 2(C6 H14 O2) FORMUL 9 HOH *425(H2 O) HELIX 1 1 SER A 2 LYS A 11 1 10 HELIX 2 2 LEU A 20 ALA A 22 5 3 HELIX 3 3 ASN A 23 LEU A 25 5 3 HELIX 4 4 GLN A 26 ASN A 37 1 12 HELIX 5 5 ALA A 59 TYR A 64 1 6 HELIX 6 6 ASN A 79 ASN A 90 1 12 HELIX 7 7 ASP A 104 ALA A 113 1 10 HELIX 8 8 PRO A 137 GLU A 142 5 6 HELIX 9 9 PRO A 165 GLY A 181 1 17 HELIX 10 10 ASN A 182 LYS A 187 5 6 HELIX 11 11 THR A 196 GLY A 206 1 11 HELIX 12 12 GLY A 216 SER A 221 5 6 HELIX 13 13 GLU A 223 ILE A 235 1 13 HELIX 14 14 SER B 2 LYS B 11 1 10 HELIX 15 15 LEU B 20 ALA B 22 5 3 HELIX 16 16 ASN B 23 LEU B 25 5 3 HELIX 17 17 GLN B 26 ASN B 37 1 12 HELIX 18 18 ALA B 59 TYR B 64 1 6 HELIX 19 19 ASN B 79 ASN B 90 1 12 HELIX 20 20 ASP B 104 ALA B 113 1 10 HELIX 21 21 PRO B 137 LEU B 145 5 9 HELIX 22 22 PRO B 165 GLY B 181 1 17 HELIX 23 23 ASN B 182 LYS B 187 5 6 HELIX 24 24 THR B 196 GLN B 205 1 10 HELIX 25 25 GLY B 216 SER B 221 5 6 HELIX 26 26 GLU B 223 ILE B 235 1 13 SHEET 1 A 9 LEU A 15 GLY A 18 0 SHEET 2 A 9 VAL A 41 ALA A 47 1 O HIS A 43 N VAL A 17 SHEET 3 A 9 PHE A 70 MSE A 76 1 O HIS A 74 N PHE A 44 SHEET 4 A 9 LEU A 94 GLN A 98 1 O THR A 96 N VAL A 73 SHEET 5 A 9 LEU A 127 LEU A 132 1 O CYS A 131 N LEU A 97 SHEET 6 A 9 VAL A 150 LEU A 154 1 O GLN A 152 N ALA A 130 SHEET 7 A 9 LEU A 188 ASP A 192 1 O ASN A 190 N LEU A 153 SHEET 8 A 9 LEU A 213 SER A 215 1 O VAL A 214 N ILE A 191 SHEET 9 A 9 LEU A 15 GLY A 18 1 N SER A 16 O SER A 215 SHEET 1 B 2 LYS A 116 TYR A 119 0 SHEET 2 B 2 GLN A 122 PRO A 125 -1 O TYR A 124 N THR A 117 SHEET 1 C 9 LEU B 15 GLY B 18 0 SHEET 2 C 9 VAL B 41 ALA B 47 1 O VAL B 41 N VAL B 17 SHEET 3 C 9 PHE B 70 MSE B 76 1 O ASP B 72 N LEU B 42 SHEET 4 C 9 LEU B 94 GLN B 98 1 O THR B 96 N LEU B 75 SHEET 5 C 9 LEU B 127 LEU B 132 1 O CYS B 131 N LEU B 97 SHEET 6 C 9 VAL B 150 LEU B 154 1 O GLN B 152 N ALA B 130 SHEET 7 C 9 LEU B 188 ASP B 192 1 O LEU B 188 N ILE B 151 SHEET 8 C 9 LEU B 213 VAL B 214 1 O VAL B 214 N ILE B 191 SHEET 9 C 9 LEU B 15 GLY B 18 1 N SER B 16 O LEU B 213 SHEET 1 D 2 LYS B 116 TYR B 119 0 SHEET 2 D 2 GLN B 122 PRO B 125 -1 O TYR B 124 N THR B 117 LINK C MSE A 1 N SER A 2 1555 1555 1.33 LINK C LEU A 75 N MSE A 76 1555 1555 1.33 LINK C MSE A 76 N VAL A 77 1555 1555 1.32 LINK C SER A 194 N MSE A 195 1555 1555 1.33 LINK C MSE A 195 N THR A 196 1555 1555 1.32 LINK C MSE B 1 N SER B 2 1555 1555 1.33 LINK C LEU B 75 N MSE B 76 1555 1555 1.34 LINK C MSE B 76 N VAL B 77 1555 1555 1.33 LINK C SER B 194 N MSE B 195 1555 1555 1.32 LINK C MSE B 195 N THR B 196 1555 1555 1.33 LINK C ILE B 235 N MSE B 236 1555 1555 1.31 LINK NE2 HIS A 43 NI NI A 238 1555 1555 2.18 LINK OD1 ASP A 45 NI NI A 238 1555 1555 2.11 LINK ND1 HIS A 74 NI NI A 238 1555 1555 2.23 LINK OD2 ASP A 192 NI NI A 238 1555 1555 2.19 LINK O PHE A 220 CA CA A 237 1555 1555 2.37 LINK CA CA A 237 O HOH A 295 1555 1555 2.48 LINK CA CA A 237 O HOH A 305 1555 1555 2.76 LINK CA CA A 237 O HOH A 345 1555 1555 2.41 LINK CA CA A 237 O HOH A 388 1555 1555 2.57 LINK NI NI A 238 O HOH A 247 1555 1555 2.36 LINK NI NI A 238 O HOH A 272 1555 1555 2.35 LINK NE2 HIS B 43 NI NI B 238 1555 1555 2.12 LINK OD1 ASP B 45 NI NI B 238 1555 1555 2.10 LINK ND1 HIS B 74 NI NI B 238 1555 1555 2.26 LINK OD2 ASP B 192 NI NI B 238 1555 1555 2.18 LINK O PHE B 220 CA CA B 237 1555 1555 2.30 LINK CA CA B 237 O HOH B 313 1555 1555 2.46 LINK CA CA B 237 O HOH B 354 1555 1555 2.29 LINK NI NI B 238 O HOH B 276 1555 1555 2.39 LINK NI NI B 238 O HOH B 302 1555 1555 2.04 SITE 1 AC1 1 PHE A 220 SITE 1 AC2 1 PHE B 220 SITE 1 AC3 4 HIS A 43 ASP A 45 HIS A 74 ASP A 192 SITE 1 AC4 4 HIS B 43 ASP B 45 HIS B 74 ASP B 192 SITE 1 AC5 5 LEU B 15 THR B 196 LEU B 197 LEU B 219 SITE 2 AC5 5 ASN B 227 SITE 1 AC6 4 THR A 196 LEU A 197 LEU A 219 ASN A 227 CRYST1 85.010 85.010 140.160 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011763 0.006792 0.000000 0.00000 SCALE2 0.000000 0.013583 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007135 0.00000 HETATM 1 N MSE A 1 59.601 34.616 20.072 1.00 45.18 N HETATM 2 CA MSE A 1 58.953 35.924 20.418 1.00 45.04 C HETATM 3 C MSE A 1 57.582 36.003 19.806 1.00 42.70 C HETATM 4 O MSE A 1 57.362 35.541 18.668 1.00 40.99 O HETATM 5 CB MSE A 1 59.790 37.097 19.933 1.00 46.49 C HETATM 6 CG MSE A 1 61.166 37.179 20.578 1.00 59.46 C HETATM 7 SE MSE A 1 61.095 37.398 22.525 0.75 79.65 SE HETATM 8 CE MSE A 1 60.597 39.287 22.597 1.00 75.06 C