data_3CU3 # _entry.id 3CU3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3CU3 pdb_00003cu3 10.2210/pdb3cu3/pdb RCSB RCSB047210 ? ? WWPDB D_1000047210 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 377910 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3CU3 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-04-15 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of Domain of Unknown Function with a Cystatin-like Fold (ZP_00107529.1) from Nostoc punctiforme PCC 73102 at 2.00 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3CU3 _cell.length_a 50.510 _cell.length_b 71.900 _cell.length_c 117.560 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3CU3 _symmetry.Int_Tables_number 24 _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Domain of unknown function with a cystatin-like fold' 19358.166 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 5 water nat water 18.015 145 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)NLQTDQTTTTADESAIRAFHRQ(MSE)IDAWNRGSGEGFAAPFSETADFITFEGTHLKGRKEIAAFHQQAFDTV VKGTRLEGEVDFVRFVNSQLAL(MSE)LVVIRVILPGQTETSASRDSLPLYVVTKGDEGWQIEGLLNTRKLTLERQFFLD DFDSLSAEAQRQVTDLVASLKQSH ; _entity_poly.pdbx_seq_one_letter_code_can ;GMNLQTDQTTTTADESAIRAFHRQMIDAWNRGSGEGFAAPFSETADFITFEGTHLKGRKEIAAFHQQAFDTVVKGTRLEG EVDFVRFVNSQLALMLVVIRVILPGQTETSASRDSLPLYVVTKGDEGWQIEGLLNTRKLTLERQFFLDDFDSLSAEAQRQ VTDLVASLKQSH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 377910 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ASN n 1 4 LEU n 1 5 GLN n 1 6 THR n 1 7 ASP n 1 8 GLN n 1 9 THR n 1 10 THR n 1 11 THR n 1 12 THR n 1 13 ALA n 1 14 ASP n 1 15 GLU n 1 16 SER n 1 17 ALA n 1 18 ILE n 1 19 ARG n 1 20 ALA n 1 21 PHE n 1 22 HIS n 1 23 ARG n 1 24 GLN n 1 25 MSE n 1 26 ILE n 1 27 ASP n 1 28 ALA n 1 29 TRP n 1 30 ASN n 1 31 ARG n 1 32 GLY n 1 33 SER n 1 34 GLY n 1 35 GLU n 1 36 GLY n 1 37 PHE n 1 38 ALA n 1 39 ALA n 1 40 PRO n 1 41 PHE n 1 42 SER n 1 43 GLU n 1 44 THR n 1 45 ALA n 1 46 ASP n 1 47 PHE n 1 48 ILE n 1 49 THR n 1 50 PHE n 1 51 GLU n 1 52 GLY n 1 53 THR n 1 54 HIS n 1 55 LEU n 1 56 LYS n 1 57 GLY n 1 58 ARG n 1 59 LYS n 1 60 GLU n 1 61 ILE n 1 62 ALA n 1 63 ALA n 1 64 PHE n 1 65 HIS n 1 66 GLN n 1 67 GLN n 1 68 ALA n 1 69 PHE n 1 70 ASP n 1 71 THR n 1 72 VAL n 1 73 VAL n 1 74 LYS n 1 75 GLY n 1 76 THR n 1 77 ARG n 1 78 LEU n 1 79 GLU n 1 80 GLY n 1 81 GLU n 1 82 VAL n 1 83 ASP n 1 84 PHE n 1 85 VAL n 1 86 ARG n 1 87 PHE n 1 88 VAL n 1 89 ASN n 1 90 SER n 1 91 GLN n 1 92 LEU n 1 93 ALA n 1 94 LEU n 1 95 MSE n 1 96 LEU n 1 97 VAL n 1 98 VAL n 1 99 ILE n 1 100 ARG n 1 101 VAL n 1 102 ILE n 1 103 LEU n 1 104 PRO n 1 105 GLY n 1 106 GLN n 1 107 THR n 1 108 GLU n 1 109 THR n 1 110 SER n 1 111 ALA n 1 112 SER n 1 113 ARG n 1 114 ASP n 1 115 SER n 1 116 LEU n 1 117 PRO n 1 118 LEU n 1 119 TYR n 1 120 VAL n 1 121 VAL n 1 122 THR n 1 123 LYS n 1 124 GLY n 1 125 ASP n 1 126 GLU n 1 127 GLY n 1 128 TRP n 1 129 GLN n 1 130 ILE n 1 131 GLU n 1 132 GLY n 1 133 LEU n 1 134 LEU n 1 135 ASN n 1 136 THR n 1 137 ARG n 1 138 LYS n 1 139 LEU n 1 140 THR n 1 141 LEU n 1 142 GLU n 1 143 ARG n 1 144 GLN n 1 145 PHE n 1 146 PHE n 1 147 LEU n 1 148 ASP n 1 149 ASP n 1 150 PHE n 1 151 ASP n 1 152 SER n 1 153 LEU n 1 154 SER n 1 155 ALA n 1 156 GLU n 1 157 ALA n 1 158 GLN n 1 159 ARG n 1 160 GLN n 1 161 VAL n 1 162 THR n 1 163 ASP n 1 164 LEU n 1 165 VAL n 1 166 ALA n 1 167 SER n 1 168 LEU n 1 169 LYS n 1 170 GLN n 1 171 SER n 1 172 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Nostoc _entity_src_gen.pdbx_gene_src_gene ZP_00107529.1 _entity_src_gen.gene_src_species 'Nostoc punctiforme' _entity_src_gen.gene_src_strain 'PCC 73102' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Nostoc punctiforme' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 63737 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3CU3 _struct_ref.pdbx_db_accession 3CU3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNLQTDQTTTTADESAIRAFHRQMIDAWNRGSGEGFAAPFSETADFITFEGTHLKGRKEIAAFHQQAFDTVVKGTRLEGE VDFVRFVNSQLALMLVVIRVILPGQTETSASRDSLPLYVVTKGDEGWQIEGLLNTRKLTLERQFFLDDFDSLSAEAQRQV TDLVASLKQSH ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3CU3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 172 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3CU3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 171 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 171 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3CU3 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name PDB _struct_ref_seq_dif.pdbx_seq_db_accession_code 3CU3 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3CU3 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.76 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 55.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.47 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'NANODROP, 0.2M Magnesium chloride, 36.0% PEG 400, 0.1M HEPES pH 7.47, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2008-03-17 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97905 1.0 3 0.97929 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list '0.91837, 0.97905, 0.97929' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3CU3 _reflns.d_resolution_high 2.00 _reflns.d_resolution_low 29.386 _reflns.number_obs 14803 _reflns.pdbx_Rmerge_I_obs 0.087 _reflns.pdbx_netI_over_sigmaI 7.970 _reflns.percent_possible_obs 98.800 _reflns.B_iso_Wilson_estimate 17.709 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 3.61 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.00 2.07 5034 ? 2650 0.380 2.260 ? ? ? ? ? 97.80 1 1 2.07 2.15 5200 ? 2705 0.295 3.0 ? ? ? ? ? 99.40 2 1 2.15 2.25 5489 ? 2853 0.239 3.5 ? ? ? ? ? 99.30 3 1 2.25 2.37 5439 ? 2819 0.203 4.0 ? ? ? ? ? 98.70 4 1 2.37 2.52 5384 ? 2785 0.172 4.8 ? ? ? ? ? 99.30 5 1 2.52 2.71 5314 ? 2742 0.139 5.8 ? ? ? ? ? 99.20 6 1 2.71 2.99 5508 ? 2832 0.101 7.7 ? ? ? ? ? 99.00 7 1 2.99 3.42 5310 ? 2723 0.066 11.2 ? ? ? ? ? 98.60 8 1 3.42 4.30 5376 ? 2758 0.039 17.5 ? ? ? ? ? 98.70 9 1 4.30 29.386 5412 ? 2763 0.034 19.8 ? ? ? ? ? 98.10 10 1 # _refine.entry_id 3CU3 _refine.ls_d_res_high 2.00 _refine.ls_d_res_low 29.386 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.610 _refine.ls_number_reflns_obs 14802 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. MG ION AND POLYETHYLENE GLYCOL MOLECULE FROM CRYSTALLIZATION CONDITION HAVE BEEN MODELED IN THE STRUCTURE. ETHYLENE GLYCOL MOLECULES FROM CRYO SOLUTION ARE ALSO MODELED IN THIS STRUCTURE. ; _refine.ls_R_factor_obs 0.164 _refine.ls_R_factor_R_work 0.161 _refine.ls_R_factor_R_free 0.216 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 751 _refine.B_iso_mean 15.479 _refine.aniso_B[1][1] -0.660 _refine.aniso_B[2][2] 1.460 _refine.aniso_B[3][3] -0.790 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.924 _refine.pdbx_overall_ESU_R 0.138 _refine.pdbx_overall_ESU_R_Free 0.142 _refine.overall_SU_ML 0.090 _refine.overall_SU_B 3.161 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1262 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 145 _refine_hist.number_atoms_total 1431 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 29.386 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1330 0.017 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 902 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1793 1.556 1.945 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2180 1.048 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 167 6.983 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 65 35.725 23.846 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 215 12.773 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11 13.752 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 204 0.092 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1501 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 288 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 819 2.063 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 337 0.612 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1320 3.243 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 511 5.560 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 473 8.132 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.790 _refine_ls_shell.number_reflns_R_work 999 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.178 _refine_ls_shell.R_factor_R_free 0.275 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 64 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1063 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3CU3 _struct.title ;Crystal structure of a domain of unknown function with a cystatin-like fold (npun_r1993) from nostoc punctiforme pcc 73102 at 2.00 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, metal binding protein' _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.entry_id 3CU3 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 11 ? ARG A 31 ? THR A 10 ARG A 30 1 ? 21 HELX_P HELX_P2 2 SER A 33 ? ALA A 39 ? SER A 32 ALA A 38 1 ? 7 HELX_P HELX_P3 3 GLY A 57 ? THR A 71 ? GLY A 56 THR A 70 1 ? 15 HELX_P HELX_P4 4 SER A 110 ? ASP A 114 ? SER A 109 ASP A 113 5 ? 5 HELX_P HELX_P5 5 THR A 140 ? LEU A 153 ? THR A 139 LEU A 152 1 ? 14 HELX_P HELX_P6 6 SER A 154 ? LYS A 169 ? SER A 153 LYS A 168 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLN 24 C ? ? ? 1_555 A MSE 25 N ? ? A GLN 23 A MSE 24 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale both ? A MSE 25 C ? ? ? 1_555 A ILE 26 N ? ? A MSE 24 A ILE 25 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? A LEU 94 C ? ? ? 1_555 A MSE 95 N ? ? A LEU 93 A MSE 94 1_555 ? ? ? ? ? ? ? 1.312 ? ? covale4 covale both ? A MSE 95 C ? ? ? 1_555 A LEU 96 N ? ? A MSE 94 A LEU 95 1_555 ? ? ? ? ? ? ? 1.327 ? ? metalc1 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 172 A HOH 194 1_555 ? ? ? ? ? ? ? 2.108 ? ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 172 A HOH 227 1_555 ? ? ? ? ? ? ? 2.149 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 172 A HOH 245 1_555 ? ? ? ? ? ? ? 2.128 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 172 A HOH 260 1_555 ? ? ? ? ? ? ? 2.347 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 172 A HOH 265 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 172 A HOH 311 1_555 ? ? ? ? ? ? ? 1.968 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 54 ? LYS A 56 ? HIS A 53 LYS A 55 A 2 PHE A 41 ? ILE A 48 ? PHE A 40 ILE A 47 A 3 GLY A 127 ? LEU A 134 ? GLY A 126 LEU A 133 A 4 LEU A 118 ? GLY A 124 ? LEU A 117 GLY A 123 A 5 LEU A 92 ? ILE A 102 ? LEU A 91 ILE A 101 A 6 ARG A 77 ? ASN A 89 ? ARG A 76 ASN A 88 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 55 ? O LEU A 54 N PHE A 47 ? N PHE A 46 A 2 3 N ILE A 48 ? N ILE A 47 O LEU A 133 ? O LEU A 132 A 3 4 O GLY A 132 ? O GLY A 131 N VAL A 120 ? N VAL A 119 A 4 5 O TYR A 119 ? O TYR A 118 N MSE A 95 ? N MSE A 94 A 5 6 O ARG A 100 ? O ARG A 99 N GLU A 79 ? N GLU A 78 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 172 ? 6 'BINDING SITE FOR RESIDUE MG A 172' AC2 Software A EDO 173 ? 5 'BINDING SITE FOR RESIDUE EDO A 173' AC3 Software A EDO 174 ? 5 'BINDING SITE FOR RESIDUE EDO A 174' AC4 Software A EDO 175 ? 2 'BINDING SITE FOR RESIDUE EDO A 175' AC5 Software A EDO 176 ? 5 'BINDING SITE FOR RESIDUE EDO A 176' AC6 Software A PEG 177 ? 3 'BINDING SITE FOR RESIDUE PEG A 177' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH H . ? HOH A 194 . ? 1_555 ? 2 AC1 6 HOH H . ? HOH A 227 . ? 1_555 ? 3 AC1 6 HOH H . ? HOH A 245 . ? 1_555 ? 4 AC1 6 HOH H . ? HOH A 260 . ? 1_555 ? 5 AC1 6 HOH H . ? HOH A 265 . ? 1_555 ? 6 AC1 6 HOH H . ? HOH A 311 . ? 1_555 ? 7 AC2 5 GLN A 106 ? GLN A 105 . ? 1_555 ? 8 AC2 5 SER A 110 ? SER A 109 . ? 1_555 ? 9 AC2 5 ASP A 151 ? ASP A 150 . ? 6_555 ? 10 AC2 5 HOH H . ? HOH A 207 . ? 6_555 ? 11 AC2 5 HOH H . ? HOH A 220 . ? 1_555 ? 12 AC3 5 TRP A 29 ? TRP A 28 . ? 1_555 ? 13 AC3 5 PHE A 69 ? PHE A 68 . ? 1_555 ? 14 AC3 5 LYS A 74 ? LYS A 73 . ? 1_555 ? 15 AC3 5 GLY A 75 ? GLY A 74 . ? 1_555 ? 16 AC3 5 THR A 76 ? THR A 75 . ? 1_555 ? 17 AC4 2 GLN A 91 ? GLN A 90 . ? 1_555 ? 18 AC4 2 GLY A 124 ? GLY A 123 . ? 1_555 ? 19 AC5 5 GLU A 142 ? GLU A 141 . ? 1_555 ? 20 AC5 5 ARG A 143 ? ARG A 142 . ? 1_555 ? 21 AC5 5 PHE A 146 ? PHE A 145 . ? 1_555 ? 22 AC5 5 PHE A 150 ? PHE A 149 . ? 6_555 ? 23 AC5 5 HOH H . ? HOH A 298 . ? 1_555 ? 24 AC6 3 ASN A 89 ? ASN A 88 . ? 1_555 ? 25 AC6 3 GLN A 91 ? GLN A 90 . ? 6_555 ? 26 AC6 3 THR A 122 ? THR A 121 . ? 6_555 ? # _atom_sites.entry_id 3CU3 _atom_sites.fract_transf_matrix[1][1] 0.019798 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013908 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008506 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 ASN 3 2 ? ? ? A . n A 1 4 LEU 4 3 ? ? ? A . n A 1 5 GLN 5 4 ? ? ? A . n A 1 6 THR 6 5 ? ? ? A . n A 1 7 ASP 7 6 ? ? ? A . n A 1 8 GLN 8 7 ? ? ? A . n A 1 9 THR 9 8 ? ? ? A . n A 1 10 THR 10 9 9 THR THR A . n A 1 11 THR 11 10 10 THR THR A . n A 1 12 THR 12 11 11 THR THR A . n A 1 13 ALA 13 12 12 ALA ALA A . n A 1 14 ASP 14 13 13 ASP ASP A . n A 1 15 GLU 15 14 14 GLU GLU A . n A 1 16 SER 16 15 15 SER SER A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 ILE 18 17 17 ILE ILE A . n A 1 19 ARG 19 18 18 ARG ARG A . n A 1 20 ALA 20 19 19 ALA ALA A . n A 1 21 PHE 21 20 20 PHE PHE A . n A 1 22 HIS 22 21 21 HIS HIS A . n A 1 23 ARG 23 22 22 ARG ARG A . n A 1 24 GLN 24 23 23 GLN GLN A . n A 1 25 MSE 25 24 24 MSE MSE A . n A 1 26 ILE 26 25 25 ILE ILE A . n A 1 27 ASP 27 26 26 ASP ASP A . n A 1 28 ALA 28 27 27 ALA ALA A . n A 1 29 TRP 29 28 28 TRP TRP A . n A 1 30 ASN 30 29 29 ASN ASN A . n A 1 31 ARG 31 30 30 ARG ARG A . n A 1 32 GLY 32 31 31 GLY GLY A . n A 1 33 SER 33 32 32 SER SER A . n A 1 34 GLY 34 33 33 GLY GLY A . n A 1 35 GLU 35 34 34 GLU GLU A . n A 1 36 GLY 36 35 35 GLY GLY A . n A 1 37 PHE 37 36 36 PHE PHE A . n A 1 38 ALA 38 37 37 ALA ALA A . n A 1 39 ALA 39 38 38 ALA ALA A . n A 1 40 PRO 40 39 39 PRO PRO A . n A 1 41 PHE 41 40 40 PHE PHE A . n A 1 42 SER 42 41 41 SER SER A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 THR 44 43 43 THR THR A . n A 1 45 ALA 45 44 44 ALA ALA A . n A 1 46 ASP 46 45 45 ASP ASP A . n A 1 47 PHE 47 46 46 PHE PHE A . n A 1 48 ILE 48 47 47 ILE ILE A . n A 1 49 THR 49 48 48 THR THR A . n A 1 50 PHE 50 49 49 PHE PHE A . n A 1 51 GLU 51 50 50 GLU GLU A . n A 1 52 GLY 52 51 51 GLY GLY A . n A 1 53 THR 53 52 52 THR THR A . n A 1 54 HIS 54 53 53 HIS HIS A . n A 1 55 LEU 55 54 54 LEU LEU A . n A 1 56 LYS 56 55 55 LYS LYS A . n A 1 57 GLY 57 56 56 GLY GLY A . n A 1 58 ARG 58 57 57 ARG ARG A . n A 1 59 LYS 59 58 58 LYS LYS A . n A 1 60 GLU 60 59 59 GLU GLU A . n A 1 61 ILE 61 60 60 ILE ILE A . n A 1 62 ALA 62 61 61 ALA ALA A . n A 1 63 ALA 63 62 62 ALA ALA A . n A 1 64 PHE 64 63 63 PHE PHE A . n A 1 65 HIS 65 64 64 HIS HIS A . n A 1 66 GLN 66 65 65 GLN GLN A . n A 1 67 GLN 67 66 66 GLN GLN A . n A 1 68 ALA 68 67 67 ALA ALA A . n A 1 69 PHE 69 68 68 PHE PHE A . n A 1 70 ASP 70 69 69 ASP ASP A . n A 1 71 THR 71 70 70 THR THR A . n A 1 72 VAL 72 71 71 VAL VAL A . n A 1 73 VAL 73 72 72 VAL VAL A . n A 1 74 LYS 74 73 73 LYS LYS A . n A 1 75 GLY 75 74 74 GLY GLY A . n A 1 76 THR 76 75 75 THR THR A . n A 1 77 ARG 77 76 76 ARG ARG A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 GLU 79 78 78 GLU GLU A . n A 1 80 GLY 80 79 79 GLY GLY A . n A 1 81 GLU 81 80 80 GLU GLU A . n A 1 82 VAL 82 81 81 VAL VAL A . n A 1 83 ASP 83 82 82 ASP ASP A . n A 1 84 PHE 84 83 83 PHE PHE A . n A 1 85 VAL 85 84 84 VAL VAL A . n A 1 86 ARG 86 85 85 ARG ARG A . n A 1 87 PHE 87 86 86 PHE PHE A . n A 1 88 VAL 88 87 87 VAL VAL A . n A 1 89 ASN 89 88 88 ASN ASN A . n A 1 90 SER 90 89 89 SER SER A . n A 1 91 GLN 91 90 90 GLN GLN A . n A 1 92 LEU 92 91 91 LEU LEU A . n A 1 93 ALA 93 92 92 ALA ALA A . n A 1 94 LEU 94 93 93 LEU LEU A . n A 1 95 MSE 95 94 94 MSE MSE A . n A 1 96 LEU 96 95 95 LEU LEU A . n A 1 97 VAL 97 96 96 VAL VAL A . n A 1 98 VAL 98 97 97 VAL VAL A . n A 1 99 ILE 99 98 98 ILE ILE A . n A 1 100 ARG 100 99 99 ARG ARG A . n A 1 101 VAL 101 100 100 VAL VAL A . n A 1 102 ILE 102 101 101 ILE ILE A . n A 1 103 LEU 103 102 102 LEU LEU A . n A 1 104 PRO 104 103 103 PRO PRO A . n A 1 105 GLY 105 104 104 GLY GLY A . n A 1 106 GLN 106 105 105 GLN GLN A . n A 1 107 THR 107 106 106 THR THR A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 THR 109 108 108 THR THR A . n A 1 110 SER 110 109 109 SER SER A . n A 1 111 ALA 111 110 110 ALA ALA A . n A 1 112 SER 112 111 111 SER SER A . n A 1 113 ARG 113 112 112 ARG ARG A . n A 1 114 ASP 114 113 113 ASP ASP A . n A 1 115 SER 115 114 114 SER SER A . n A 1 116 LEU 116 115 115 LEU LEU A . n A 1 117 PRO 117 116 116 PRO PRO A . n A 1 118 LEU 118 117 117 LEU LEU A . n A 1 119 TYR 119 118 118 TYR TYR A . n A 1 120 VAL 120 119 119 VAL VAL A . n A 1 121 VAL 121 120 120 VAL VAL A . n A 1 122 THR 122 121 121 THR THR A . n A 1 123 LYS 123 122 122 LYS LYS A . n A 1 124 GLY 124 123 123 GLY GLY A . n A 1 125 ASP 125 124 124 ASP ASP A . n A 1 126 GLU 126 125 125 GLU GLU A . n A 1 127 GLY 127 126 126 GLY GLY A . n A 1 128 TRP 128 127 127 TRP TRP A . n A 1 129 GLN 129 128 128 GLN GLN A . n A 1 130 ILE 130 129 129 ILE ILE A . n A 1 131 GLU 131 130 130 GLU GLU A . n A 1 132 GLY 132 131 131 GLY GLY A . n A 1 133 LEU 133 132 132 LEU LEU A . n A 1 134 LEU 134 133 133 LEU LEU A . n A 1 135 ASN 135 134 134 ASN ASN A . n A 1 136 THR 136 135 135 THR THR A . n A 1 137 ARG 137 136 136 ARG ARG A . n A 1 138 LYS 138 137 137 LYS LYS A . n A 1 139 LEU 139 138 138 LEU LEU A . n A 1 140 THR 140 139 139 THR THR A . n A 1 141 LEU 141 140 140 LEU LEU A . n A 1 142 GLU 142 141 141 GLU GLU A . n A 1 143 ARG 143 142 142 ARG ARG A . n A 1 144 GLN 144 143 143 GLN GLN A . n A 1 145 PHE 145 144 144 PHE PHE A . n A 1 146 PHE 146 145 145 PHE PHE A . n A 1 147 LEU 147 146 146 LEU LEU A . n A 1 148 ASP 148 147 147 ASP ASP A . n A 1 149 ASP 149 148 148 ASP ASP A . n A 1 150 PHE 150 149 149 PHE PHE A . n A 1 151 ASP 151 150 150 ASP ASP A . n A 1 152 SER 152 151 151 SER SER A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 SER 154 153 153 SER SER A . n A 1 155 ALA 155 154 154 ALA ALA A . n A 1 156 GLU 156 155 155 GLU GLU A . n A 1 157 ALA 157 156 156 ALA ALA A . n A 1 158 GLN 158 157 157 GLN GLN A . n A 1 159 ARG 159 158 158 ARG ARG A . n A 1 160 GLN 160 159 159 GLN GLN A . n A 1 161 VAL 161 160 160 VAL VAL A . n A 1 162 THR 162 161 161 THR THR A . n A 1 163 ASP 163 162 162 ASP ASP A . n A 1 164 LEU 164 163 163 LEU LEU A . n A 1 165 VAL 165 164 164 VAL VAL A . n A 1 166 ALA 166 165 165 ALA ALA A . n A 1 167 SER 167 166 166 SER SER A . n A 1 168 LEU 168 167 167 LEU LEU A . n A 1 169 LYS 169 168 168 LYS LYS A . n A 1 170 GLN 170 169 169 GLN GLN A . n A 1 171 SER 171 170 170 SER SER A . n A 1 172 HIS 172 171 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 172 1 MG MG A . C 3 EDO 1 173 3 EDO EDO A . D 3 EDO 1 174 4 EDO EDO A . E 3 EDO 1 175 5 EDO EDO A . F 3 EDO 1 176 6 EDO EDO A . G 4 PEG 1 177 2 PEG PEG A . H 5 HOH 1 178 7 HOH HOH A . H 5 HOH 2 179 8 HOH HOH A . H 5 HOH 3 180 9 HOH HOH A . H 5 HOH 4 181 10 HOH HOH A . H 5 HOH 5 182 11 HOH HOH A . H 5 HOH 6 183 12 HOH HOH A . H 5 HOH 7 184 13 HOH HOH A . H 5 HOH 8 185 14 HOH HOH A . H 5 HOH 9 186 15 HOH HOH A . H 5 HOH 10 187 16 HOH HOH A . H 5 HOH 11 188 17 HOH HOH A . H 5 HOH 12 189 18 HOH HOH A . H 5 HOH 13 190 19 HOH HOH A . H 5 HOH 14 191 20 HOH HOH A . H 5 HOH 15 192 21 HOH HOH A . H 5 HOH 16 193 22 HOH HOH A . H 5 HOH 17 194 23 HOH HOH A . H 5 HOH 18 195 24 HOH HOH A . H 5 HOH 19 196 25 HOH HOH A . H 5 HOH 20 197 26 HOH HOH A . H 5 HOH 21 198 27 HOH HOH A . H 5 HOH 22 199 28 HOH HOH A . H 5 HOH 23 200 29 HOH HOH A . H 5 HOH 24 201 30 HOH HOH A . H 5 HOH 25 202 31 HOH HOH A . H 5 HOH 26 203 32 HOH HOH A . H 5 HOH 27 204 33 HOH HOH A . H 5 HOH 28 205 34 HOH HOH A . H 5 HOH 29 206 35 HOH HOH A . H 5 HOH 30 207 36 HOH HOH A . H 5 HOH 31 208 37 HOH HOH A . H 5 HOH 32 209 38 HOH HOH A . H 5 HOH 33 210 39 HOH HOH A . H 5 HOH 34 211 40 HOH HOH A . H 5 HOH 35 212 41 HOH HOH A . H 5 HOH 36 213 42 HOH HOH A . H 5 HOH 37 214 43 HOH HOH A . H 5 HOH 38 215 44 HOH HOH A . H 5 HOH 39 216 45 HOH HOH A . H 5 HOH 40 217 46 HOH HOH A . H 5 HOH 41 218 47 HOH HOH A . H 5 HOH 42 219 48 HOH HOH A . H 5 HOH 43 220 49 HOH HOH A . H 5 HOH 44 221 50 HOH HOH A . H 5 HOH 45 222 51 HOH HOH A . H 5 HOH 46 223 52 HOH HOH A . H 5 HOH 47 224 53 HOH HOH A . H 5 HOH 48 225 54 HOH HOH A . H 5 HOH 49 226 55 HOH HOH A . H 5 HOH 50 227 56 HOH HOH A . H 5 HOH 51 228 57 HOH HOH A . H 5 HOH 52 229 58 HOH HOH A . H 5 HOH 53 230 59 HOH HOH A . H 5 HOH 54 231 60 HOH HOH A . H 5 HOH 55 232 61 HOH HOH A . H 5 HOH 56 233 62 HOH HOH A . H 5 HOH 57 234 63 HOH HOH A . H 5 HOH 58 235 64 HOH HOH A . H 5 HOH 59 236 65 HOH HOH A . H 5 HOH 60 237 66 HOH HOH A . H 5 HOH 61 238 67 HOH HOH A . H 5 HOH 62 239 68 HOH HOH A . H 5 HOH 63 240 69 HOH HOH A . H 5 HOH 64 241 70 HOH HOH A . H 5 HOH 65 242 71 HOH HOH A . H 5 HOH 66 243 72 HOH HOH A . H 5 HOH 67 244 73 HOH HOH A . H 5 HOH 68 245 74 HOH HOH A . H 5 HOH 69 246 75 HOH HOH A . H 5 HOH 70 247 76 HOH HOH A . H 5 HOH 71 248 77 HOH HOH A . H 5 HOH 72 249 78 HOH HOH A . H 5 HOH 73 250 79 HOH HOH A . H 5 HOH 74 251 80 HOH HOH A . H 5 HOH 75 252 81 HOH HOH A . H 5 HOH 76 253 82 HOH HOH A . H 5 HOH 77 254 83 HOH HOH A . H 5 HOH 78 255 84 HOH HOH A . H 5 HOH 79 256 85 HOH HOH A . H 5 HOH 80 257 86 HOH HOH A . H 5 HOH 81 258 87 HOH HOH A . H 5 HOH 82 259 88 HOH HOH A . H 5 HOH 83 260 89 HOH HOH A . H 5 HOH 84 261 90 HOH HOH A . H 5 HOH 85 262 91 HOH HOH A . H 5 HOH 86 263 92 HOH HOH A . H 5 HOH 87 264 93 HOH HOH A . H 5 HOH 88 265 94 HOH HOH A . H 5 HOH 89 266 95 HOH HOH A . H 5 HOH 90 267 96 HOH HOH A . H 5 HOH 91 268 97 HOH HOH A . H 5 HOH 92 269 98 HOH HOH A . H 5 HOH 93 270 99 HOH HOH A . H 5 HOH 94 271 100 HOH HOH A . H 5 HOH 95 272 101 HOH HOH A . H 5 HOH 96 273 102 HOH HOH A . H 5 HOH 97 274 103 HOH HOH A . H 5 HOH 98 275 104 HOH HOH A . H 5 HOH 99 276 105 HOH HOH A . H 5 HOH 100 277 106 HOH HOH A . H 5 HOH 101 278 107 HOH HOH A . H 5 HOH 102 279 108 HOH HOH A . H 5 HOH 103 280 109 HOH HOH A . H 5 HOH 104 281 110 HOH HOH A . H 5 HOH 105 282 111 HOH HOH A . H 5 HOH 106 283 112 HOH HOH A . H 5 HOH 107 284 113 HOH HOH A . H 5 HOH 108 285 114 HOH HOH A . H 5 HOH 109 286 115 HOH HOH A . H 5 HOH 110 287 116 HOH HOH A . H 5 HOH 111 288 117 HOH HOH A . H 5 HOH 112 289 118 HOH HOH A . H 5 HOH 113 290 119 HOH HOH A . H 5 HOH 114 291 120 HOH HOH A . H 5 HOH 115 292 121 HOH HOH A . H 5 HOH 116 293 122 HOH HOH A . H 5 HOH 117 294 123 HOH HOH A . H 5 HOH 118 295 124 HOH HOH A . H 5 HOH 119 296 125 HOH HOH A . H 5 HOH 120 297 126 HOH HOH A . H 5 HOH 121 298 127 HOH HOH A . H 5 HOH 122 299 128 HOH HOH A . H 5 HOH 123 300 129 HOH HOH A . H 5 HOH 124 301 130 HOH HOH A . H 5 HOH 125 302 131 HOH HOH A . H 5 HOH 126 303 132 HOH HOH A . H 5 HOH 127 304 133 HOH HOH A . H 5 HOH 128 305 134 HOH HOH A . H 5 HOH 129 306 135 HOH HOH A . H 5 HOH 130 307 136 HOH HOH A . H 5 HOH 131 308 137 HOH HOH A . H 5 HOH 132 309 138 HOH HOH A . H 5 HOH 133 310 139 HOH HOH A . H 5 HOH 134 311 140 HOH HOH A . H 5 HOH 135 312 141 HOH HOH A . H 5 HOH 136 313 142 HOH HOH A . H 5 HOH 137 314 143 HOH HOH A . H 5 HOH 138 315 144 HOH HOH A . H 5 HOH 139 316 145 HOH HOH A . H 5 HOH 140 317 146 HOH HOH A . H 5 HOH 141 318 147 HOH HOH A . H 5 HOH 142 319 148 HOH HOH A . H 5 HOH 143 320 149 HOH HOH A . H 5 HOH 144 321 150 HOH HOH A . H 5 HOH 145 322 151 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 25 A MSE 24 ? MET SELENOMETHIONINE 2 A MSE 95 A MSE 94 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4400 ? 1 MORE -34.4 ? 1 'SSA (A^2)' 15160 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 -x,-y+1/2,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 35.9500000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? H HOH . ? A HOH 194 ? 1_555 MG ? B MG . ? A MG 172 ? 1_555 O ? H HOH . ? A HOH 227 ? 1_555 84.2 ? 2 O ? H HOH . ? A HOH 194 ? 1_555 MG ? B MG . ? A MG 172 ? 1_555 O ? H HOH . ? A HOH 245 ? 1_555 101.2 ? 3 O ? H HOH . ? A HOH 227 ? 1_555 MG ? B MG . ? A MG 172 ? 1_555 O ? H HOH . ? A HOH 245 ? 1_555 170.0 ? 4 O ? H HOH . ? A HOH 194 ? 1_555 MG ? B MG . ? A MG 172 ? 1_555 O ? H HOH . ? A HOH 260 ? 1_555 160.7 ? 5 O ? H HOH . ? A HOH 227 ? 1_555 MG ? B MG . ? A MG 172 ? 1_555 O ? H HOH . ? A HOH 260 ? 1_555 76.8 ? 6 O ? H HOH . ? A HOH 245 ? 1_555 MG ? B MG . ? A MG 172 ? 1_555 O ? H HOH . ? A HOH 260 ? 1_555 97.0 ? 7 O ? H HOH . ? A HOH 194 ? 1_555 MG ? B MG . ? A MG 172 ? 1_555 O ? H HOH . ? A HOH 265 ? 1_555 91.2 ? 8 O ? H HOH . ? A HOH 227 ? 1_555 MG ? B MG . ? A MG 172 ? 1_555 O ? H HOH . ? A HOH 265 ? 1_555 91.9 ? 9 O ? H HOH . ? A HOH 245 ? 1_555 MG ? B MG . ? A MG 172 ? 1_555 O ? H HOH . ? A HOH 265 ? 1_555 96.3 ? 10 O ? H HOH . ? A HOH 260 ? 1_555 MG ? B MG . ? A MG 172 ? 1_555 O ? H HOH . ? A HOH 265 ? 1_555 93.2 ? 11 O ? H HOH . ? A HOH 194 ? 1_555 MG ? B MG . ? A MG 172 ? 1_555 O ? H HOH . ? A HOH 311 ? 1_555 85.2 ? 12 O ? H HOH . ? A HOH 227 ? 1_555 MG ? B MG . ? A MG 172 ? 1_555 O ? H HOH . ? A HOH 311 ? 1_555 90.4 ? 13 O ? H HOH . ? A HOH 245 ? 1_555 MG ? B MG . ? A MG 172 ? 1_555 O ? H HOH . ? A HOH 311 ? 1_555 81.8 ? 14 O ? H HOH . ? A HOH 260 ? 1_555 MG ? B MG . ? A MG 172 ? 1_555 O ? H HOH . ? A HOH 311 ? 1_555 91.2 ? 15 O ? H HOH . ? A HOH 265 ? 1_555 MG ? B MG . ? A MG 172 ? 1_555 O ? H HOH . ? A HOH 311 ? 1_555 175.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_ref_seq_dif 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.value' 17 5 'Structure model' '_struct_conn.pdbx_dist_value' 18 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 19 5 'Structure model' '_struct_ref_seq_dif.details' 20 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 21 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 22 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.4.0067 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SOLVE . ? package 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 # _pdbx_entry_details.entry_id 3CU3 _pdbx_entry_details.sequence_details ;1. THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. 2. THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT THE UNIPROT KNOWLEDGEBASE DATABASE (UNIPROTKB) AT THE TIME OF DEPOSITION. THE SEQUENCE INFORMATION IS AVAILABLE AT GENBANK WITH ACCESSION CODE ZP_00107529.1 ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 50 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OG1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 THR _pdbx_validate_close_contact.auth_seq_id_2 52 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.15 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 30 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 30 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 30 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.88 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.42 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id THR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 70 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -131.25 _pdbx_validate_torsion.psi -97.02 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLN _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 169 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 SER _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 170 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -54.93 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 55 ? CD ? A LYS 56 CD 2 1 Y 1 A LYS 55 ? CE ? A LYS 56 CE 3 1 Y 1 A LYS 55 ? NZ ? A LYS 56 NZ 4 1 Y 1 A LYS 58 ? CD ? A LYS 59 CD 5 1 Y 1 A LYS 58 ? CE ? A LYS 59 CE 6 1 Y 1 A LYS 58 ? NZ ? A LYS 59 NZ 7 1 Y 1 A GLU 107 ? CG ? A GLU 108 CG 8 1 Y 1 A GLU 107 ? CD ? A GLU 108 CD 9 1 Y 1 A GLU 107 ? OE1 ? A GLU 108 OE1 10 1 Y 1 A GLU 107 ? OE2 ? A GLU 108 OE2 11 1 Y 1 A LYS 168 ? CD ? A LYS 169 CD 12 1 Y 1 A LYS 168 ? CE ? A LYS 169 CE 13 1 Y 1 A LYS 168 ? NZ ? A LYS 169 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A ASN 2 ? A ASN 3 4 1 Y 1 A LEU 3 ? A LEU 4 5 1 Y 1 A GLN 4 ? A GLN 5 6 1 Y 1 A THR 5 ? A THR 6 7 1 Y 1 A ASP 6 ? A ASP 7 8 1 Y 1 A GLN 7 ? A GLN 8 9 1 Y 1 A THR 8 ? A THR 9 10 1 Y 1 A HIS 171 ? A HIS 172 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 1,2-ETHANEDIOL EDO 4 'DI(HYDROXYETHYL)ETHER' PEG 5 water HOH #