HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 22-APR-08 3CWQ TITLE CRYSTAL STRUCTURE OF CHROMOSOME PARTITIONING PROTEIN (PARA) IN COMPLEX TITLE 2 WITH ADP FROM SYNECHOCYSTIS SP. NORTHEAST STRUCTURAL GENOMICS TITLE 3 CONSORTIUM TARGET SGR89 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARA FAMILY CHROMOSOME PARTITIONING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP.; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 STRAIN: PCC 6803; SOURCE 5 GENE: SLL6036; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS ALPHA-BETA PROTEIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR F.FOROUHAR,H.NEELY,J.SEETHARAMAN,L.MAO,R.XIAO,H.JANJUA,M.MAGLAQUI, AUTHOR 2 E.L.FOOTE,D.LEE,J.K.EVERETT,T.B.ACTON,G.T.MONTELIONE,L.TONG, AUTHOR 3 J.F.HUNT,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 6 13-NOV-24 3CWQ 1 REMARK SEQADV LINK REVDAT 5 25-OCT-17 3CWQ 1 REMARK REVDAT 4 13-JUL-11 3CWQ 1 VERSN REVDAT 3 24-FEB-09 3CWQ 1 VERSN REVDAT 2 20-MAY-08 3CWQ 1 TITLE REVDAT 1 13-MAY-08 3CWQ 0 JRNL AUTH F.FOROUHAR,H.NEELY,J.SEETHARAMAN,L.MAO,R.XIAO,H.JANJUA, JRNL AUTH 2 M.MAGLAQUI,E.L.FOOTE,D.LEE,J.K.EVERETT,T.B.ACTON, JRNL AUTH 3 G.T.MONTELIONE,L.TONG,J.F.HUNT JRNL TITL CRYSTAL STRUCTURE OF CHROMOSOME PARTITIONING PROTEIN (PARA) JRNL TITL 2 IN COMPLEX WITH ADP FROM SYNECHOCYSTIS SP. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 842 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 788 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3074 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 28.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.83000 REMARK 3 B22 (A**2) : -7.08000 REMARK 3 B33 (A**2) : 11.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.563 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.318 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.253 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.339 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3190 ; 0.031 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4338 ; 2.669 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 400 ; 7.969 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;40.472 ;24.426 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 550 ;23.585 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.947 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 509 ; 0.167 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2327 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1533 ; 0.274 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2177 ; 0.333 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 117 ; 0.212 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.308 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.232 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2080 ; 1.360 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3219 ; 2.089 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1306 ; 3.351 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1119 ; 4.931 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 302 B 320 REMARK 3 RESIDUE RANGE : A 302 A 322 REMARK 3 RESIDUE RANGE : B 301 B 301 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 RESIDUE RANGE : B 1 B 201 REMARK 3 RESIDUE RANGE : A 1 A 206 REMARK 3 ORIGIN FOR THE GROUP (A): 74.1905 38.4644 65.5746 REMARK 3 T TENSOR REMARK 3 T11: -0.0214 T22: 0.0842 REMARK 3 T33: -0.1771 T12: 0.0064 REMARK 3 T13: -0.0135 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 1.6093 L22: 4.6662 REMARK 3 L33: 0.5751 L12: 1.2440 REMARK 3 L13: -0.4318 L23: -0.7383 REMARK 3 S TENSOR REMARK 3 S11: 0.0610 S12: -0.1537 S13: -0.0576 REMARK 3 S21: 0.1562 S22: -0.0591 S23: -0.1534 REMARK 3 S31: -0.0106 S32: 0.0287 S33: -0.0019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FRIEDEL PAIRS WERE USED IN PHASING. REMARK 3 PROGRAM CNS 1.2 HAS ALSO BEEN USED IN REFINEMENT. REMARK 4 REMARK 4 3CWQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047305. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97898 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33511 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.470 REMARK 200 RESOLUTION RANGE LOW (A) : 29.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 32.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.22000 REMARK 200 R SYM FOR SHELL (I) : 0.15500 REMARK 200 FOR SHELL : 6.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SNB, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 10 MM TRIS-HCL PH REMARK 280 7.5, 100 SODIUM CHLORIDE, 5 MM DTT. RESEVOIR SOLUTION: 25% REMARK 280 ETHYLENE GLYCOL, MICROBATCH UNDER OIL, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.80450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.10450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.07100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.10450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.80450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.07100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 207 REMARK 465 HIS A 208 REMARK 465 HIS A 209 REMARK 465 PRO B 79 REMARK 465 GLU B 80 REMARK 465 ASP B 81 REMARK 465 GLU B 82 REMARK 465 LEU B 202 REMARK 465 GLU B 203 REMARK 465 HIS B 204 REMARK 465 HIS B 205 REMARK 465 HIS B 206 REMARK 465 HIS B 207 REMARK 465 HIS B 208 REMARK 465 HIS B 209 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR B 133 N SER B 135 2.03 REMARK 500 OD1 ASN A 39 O HOH A 308 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 19 CB VAL A 19 CG1 0.148 REMARK 500 TYR A 188 CE1 TYR A 188 CZ 0.104 REMARK 500 LYS B 67 CD LYS B 67 CE 0.165 REMARK 500 GLU B 194 CD GLU B 194 OE2 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 37 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 59 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 74 CB - CG - OD2 ANGL. DEV. = 9.4 DEGREES REMARK 500 ASP A 89 CB - CG - OD2 ANGL. DEV. = 7.9 DEGREES REMARK 500 ASP A 137 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 178 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 LEU A 202 CB - CG - CD2 ANGL. DEV. = 15.3 DEGREES REMARK 500 ASP B 74 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 89 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 LEU B 110 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 ILE B 157 CG1 - CB - CG2 ANGL. DEV. = -13.3 DEGREES REMARK 500 ASP B 187 CB - CG - OD2 ANGL. DEV. = 8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 14 -72.34 -48.30 REMARK 500 ARG A 78 92.31 59.72 REMARK 500 GLU A 80 -37.79 -143.94 REMARK 500 ASP A 81 -97.99 -148.04 REMARK 500 GLU A 82 62.84 -112.84 REMARK 500 PRO A 134 -76.18 -24.82 REMARK 500 ASP A 178 144.03 -171.38 REMARK 500 LEU A 200 31.34 -97.31 REMARK 500 ILE B 112 -30.90 -37.43 REMARK 500 LYS B 117 48.69 -70.65 REMARK 500 LEU B 118 -44.04 -138.80 REMARK 500 ARG B 124 132.37 -172.87 REMARK 500 PRO B 134 -5.43 -46.06 REMARK 500 THR B 147 -37.46 -38.94 REMARK 500 LYS B 154 -55.68 -29.11 REMARK 500 GLU B 197 30.39 -93.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL B 12 14.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SGR89 RELATED DB: TARGETDB DBREF 3CWQ A 1 201 UNP Q6YRW8 Q6YRW8_SYNY3 1 201 DBREF 3CWQ B 1 201 UNP Q6YRW8 Q6YRW8_SYNY3 1 201 SEQADV 3CWQ LEU A 202 UNP Q6YRW8 EXPRESSION TAG SEQADV 3CWQ GLU A 203 UNP Q6YRW8 EXPRESSION TAG SEQADV 3CWQ HIS A 204 UNP Q6YRW8 EXPRESSION TAG SEQADV 3CWQ HIS A 205 UNP Q6YRW8 EXPRESSION TAG SEQADV 3CWQ HIS A 206 UNP Q6YRW8 EXPRESSION TAG SEQADV 3CWQ HIS A 207 UNP Q6YRW8 EXPRESSION TAG SEQADV 3CWQ HIS A 208 UNP Q6YRW8 EXPRESSION TAG SEQADV 3CWQ HIS A 209 UNP Q6YRW8 EXPRESSION TAG SEQADV 3CWQ LEU B 202 UNP Q6YRW8 EXPRESSION TAG SEQADV 3CWQ GLU B 203 UNP Q6YRW8 EXPRESSION TAG SEQADV 3CWQ HIS B 204 UNP Q6YRW8 EXPRESSION TAG SEQADV 3CWQ HIS B 205 UNP Q6YRW8 EXPRESSION TAG SEQADV 3CWQ HIS B 206 UNP Q6YRW8 EXPRESSION TAG SEQADV 3CWQ HIS B 207 UNP Q6YRW8 EXPRESSION TAG SEQADV 3CWQ HIS B 208 UNP Q6YRW8 EXPRESSION TAG SEQADV 3CWQ HIS B 209 UNP Q6YRW8 EXPRESSION TAG SEQRES 1 A 209 MSE ILE ILE THR VAL ALA SER PHE LYS GLY GLY VAL GLY SEQRES 2 A 209 LYS THR THR THR ALA VAL HIS LEU SER ALA TYR LEU ALA SEQRES 3 A 209 LEU GLN GLY GLU THR LEU LEU ILE ASP GLY ASP PRO ASN SEQRES 4 A 209 ARG SER ALA THR GLY TRP GLY LYS ARG GLY SER LEU PRO SEQRES 5 A 209 PHE LYS VAL VAL ASP GLU ARG GLN ALA ALA LYS TYR ALA SEQRES 6 A 209 PRO LYS TYR GLN ASN ILE VAL ILE ASP THR GLN ALA ARG SEQRES 7 A 209 PRO GLU ASP GLU ASP LEU GLU ALA LEU ALA ASP GLY CYS SEQRES 8 A 209 ASP LEU LEU VAL ILE PRO SER THR PRO ASP ALA LEU ALA SEQRES 9 A 209 LEU ASP ALA LEU MSE LEU THR ILE GLU THR LEU GLN LYS SEQRES 10 A 209 LEU GLY ASN ASN ARG PHE ARG ILE LEU LEU THR ILE ILE SEQRES 11 A 209 PRO PRO TYR PRO SER LYS ASP GLY ASP GLU ALA ARG GLN SEQRES 12 A 209 LEU LEU THR THR ALA GLY LEU PRO LEU PHE LYS ARG GLY SEQRES 13 A 209 ILE LYS ARG TYR SER ALA PHE GLN LYS ALA SER LEU ASN SEQRES 14 A 209 GLY VAL VAL VAL SER GLU VAL SER ASP SER LYS ALA GLY SEQRES 15 A 209 ILE ALA TRP SER ASP TYR LYS ALA THR GLY LYS GLU ILE SEQRES 16 A 209 VAL GLU GLU ILE LEU THR LEU GLU HIS HIS HIS HIS HIS SEQRES 17 A 209 HIS SEQRES 1 B 209 MSE ILE ILE THR VAL ALA SER PHE LYS GLY GLY VAL GLY SEQRES 2 B 209 LYS THR THR THR ALA VAL HIS LEU SER ALA TYR LEU ALA SEQRES 3 B 209 LEU GLN GLY GLU THR LEU LEU ILE ASP GLY ASP PRO ASN SEQRES 4 B 209 ARG SER ALA THR GLY TRP GLY LYS ARG GLY SER LEU PRO SEQRES 5 B 209 PHE LYS VAL VAL ASP GLU ARG GLN ALA ALA LYS TYR ALA SEQRES 6 B 209 PRO LYS TYR GLN ASN ILE VAL ILE ASP THR GLN ALA ARG SEQRES 7 B 209 PRO GLU ASP GLU ASP LEU GLU ALA LEU ALA ASP GLY CYS SEQRES 8 B 209 ASP LEU LEU VAL ILE PRO SER THR PRO ASP ALA LEU ALA SEQRES 9 B 209 LEU ASP ALA LEU MSE LEU THR ILE GLU THR LEU GLN LYS SEQRES 10 B 209 LEU GLY ASN ASN ARG PHE ARG ILE LEU LEU THR ILE ILE SEQRES 11 B 209 PRO PRO TYR PRO SER LYS ASP GLY ASP GLU ALA ARG GLN SEQRES 12 B 209 LEU LEU THR THR ALA GLY LEU PRO LEU PHE LYS ARG GLY SEQRES 13 B 209 ILE LYS ARG TYR SER ALA PHE GLN LYS ALA SER LEU ASN SEQRES 14 B 209 GLY VAL VAL VAL SER GLU VAL SER ASP SER LYS ALA GLY SEQRES 15 B 209 ILE ALA TRP SER ASP TYR LYS ALA THR GLY LYS GLU ILE SEQRES 16 B 209 VAL GLU GLU ILE LEU THR LEU GLU HIS HIS HIS HIS HIS SEQRES 17 B 209 HIS MODRES 3CWQ MSE A 1 MET SELENOMETHIONINE MODRES 3CWQ MSE A 109 MET SELENOMETHIONINE MODRES 3CWQ MSE B 1 MET SELENOMETHIONINE MODRES 3CWQ MSE B 109 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 109 8 HET MSE B 1 8 HET MSE B 109 8 HET ADP A 301 27 HET ADP B 301 27 HETNAM MSE SELENOMETHIONINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 HOH *39(H2 O) HELIX 1 1 GLY A 13 LEU A 27 1 15 HELIX 2 2 ARG A 40 GLY A 49 1 10 HELIX 3 3 GLN A 60 ALA A 65 1 6 HELIX 4 4 PRO A 66 TYR A 68 5 3 HELIX 5 5 GLU A 82 GLY A 90 1 9 HELIX 6 6 ASP A 101 LEU A 118 1 18 HELIX 7 7 LYS A 136 ALA A 148 1 13 HELIX 8 8 SER A 161 GLY A 170 1 10 HELIX 9 9 LYS A 180 LEU A 200 1 21 HELIX 10 10 GLY B 13 GLY B 29 1 17 HELIX 11 11 ARG B 40 ARG B 48 1 9 HELIX 12 12 GLN B 60 ALA B 65 1 6 HELIX 13 13 PRO B 66 TYR B 68 5 3 HELIX 14 14 ASP B 83 GLY B 90 1 8 HELIX 15 15 ASP B 101 THR B 111 1 11 HELIX 16 16 THR B 111 LYS B 117 1 7 HELIX 17 17 LEU B 118 ASN B 121 5 4 HELIX 18 18 LYS B 136 ALA B 148 1 13 HELIX 19 19 TYR B 160 GLY B 170 1 11 HELIX 20 20 VAL B 172 VAL B 176 5 5 HELIX 21 21 LYS B 180 LEU B 200 1 21 SHEET 1 A 6 LYS A 54 ASP A 57 0 SHEET 2 A 6 THR A 31 GLY A 36 1 N ASP A 35 O VAL A 56 SHEET 3 A 6 ASN A 70 GLN A 76 1 O ASP A 74 N GLY A 36 SHEET 4 A 6 ILE A 2 SER A 7 1 N ILE A 3 O ILE A 71 SHEET 5 A 6 LEU A 93 SER A 98 1 O VAL A 95 N THR A 4 SHEET 6 A 6 PHE A 123 LEU A 127 1 O LEU A 126 N SER A 98 SHEET 1 B 6 LYS B 54 ASP B 57 0 SHEET 2 B 6 THR B 31 GLY B 36 1 N ASP B 35 O VAL B 56 SHEET 3 B 6 ASN B 70 GLN B 76 1 O ASN B 70 N LEU B 32 SHEET 4 B 6 ILE B 2 SER B 7 1 N VAL B 5 O ILE B 73 SHEET 5 B 6 LEU B 93 SER B 98 1 O VAL B 95 N THR B 4 SHEET 6 B 6 PHE B 123 LEU B 127 1 O LEU B 126 N SER B 98 LINK C MSE A 1 N ILE A 2 1555 1555 1.31 LINK C LEU A 108 N MSE A 109 1555 1555 1.33 LINK C MSE A 109 N LEU A 110 1555 1555 1.33 LINK C MSE B 1 N ILE B 2 1555 1555 1.32 LINK C LEU B 108 N MSE B 109 1555 1555 1.33 LINK C MSE B 109 N LEU B 110 1555 1555 1.34 SITE 1 AC1 13 LYS A 9 GLY A 11 GLY A 13 LYS A 14 SITE 2 AC1 13 THR A 15 THR A 16 ILE A 129 ILE A 157 SITE 3 AC1 13 LYS A 158 ARG A 159 TYR A 160 PHE A 163 SITE 4 AC1 13 GLN A 164 SITE 1 AC2 13 GLY B 10 GLY B 11 GLY B 13 LYS B 14 SITE 2 AC2 13 THR B 15 THR B 16 ILE B 129 ILE B 157 SITE 3 AC2 13 LYS B 158 ARG B 159 TYR B 160 PHE B 163 SITE 4 AC2 13 GLN B 164 CRYST1 63.609 70.142 112.209 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015721 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014257 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008912 0.00000 HETATM 1 N MSE A 1 82.289 23.027 63.442 1.00 53.25 N HETATM 2 CA MSE A 1 80.957 22.561 63.066 1.00 54.25 C HETATM 3 C MSE A 1 79.962 23.430 63.789 1.00 49.34 C HETATM 4 O MSE A 1 79.975 23.531 65.006 1.00 47.57 O HETATM 5 CB MSE A 1 80.804 21.119 63.473 1.00 53.31 C HETATM 6 CG MSE A 1 79.729 20.433 62.672 1.00 58.79 C HETATM 7 SE MSE A 1 79.318 18.523 63.216 1.00 67.91 SE HETATM 8 CE MSE A 1 78.801 19.061 65.204 1.00 68.27 C