data_3CY4 # _entry.id 3CY4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3CY4 pdb_00003cy4 10.2210/pdb3cy4/pdb RCSB RCSB047355 ? ? WWPDB D_1000047355 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2008-05-13 _pdbx_database_PDB_obs_spr.pdb_id 3CY4 _pdbx_database_PDB_obs_spr.replace_pdb_id 2RL6 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2RL7 . unspecified PDB 2RL8 . unspecified PDB 2RL9 . unspecified PDB 2RLB . unspecified # _pdbx_database_status.entry_id 3CY4 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-04-25 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Olson, L.J.' 1 'Hindsgaul, O.' 2 'Dahms, N.M.' 3 'Kim, J.-J.P.' 4 # _citation.id primary _citation.title ;Structural Insights into the Mechanism of pH-dependent Ligand Binding and Release by the Cation-dependent Mannose 6-Phosphate Receptor. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 283 _citation.page_first 10124 _citation.page_last 10134 _citation.year 2008 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18272523 _citation.pdbx_database_id_DOI 10.1074/jbc.M708994200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Olson, L.J.' 1 ? primary 'Hindsgaul, O.' 2 ? primary 'Dahms, N.M.' 3 ? primary 'Kim, J.J.' 4 ? # _cell.length_a 41.715 _cell.length_b 74.172 _cell.length_c 55.516 _cell.angle_alpha 90.000 _cell.angle_beta 94.670 _cell.angle_gamma 90.000 _cell.entry_id 3CY4 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 3CY4 _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cation-dependent mannose-6-phosphate receptor' 17443.580 2 ? 'N31Q, N57Q, N68Q, N87Q' ? ? 2 branched man ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 910.823 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 334 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CD Man-6-P receptor, CD-MPR, 46 kDa mannose 6-phosphate receptor, MPR 46' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TEEKTCDLVGEKGKESEKELALLKRLTPLFQKSFESTVGQSPDMYSYVFRVCREAGQHSSGAGLVQIQKSNGKETVVGRF NETQIFQGSNWIMLIYKGGDEYDNHCGREQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS ; _entity_poly.pdbx_seq_one_letter_code_can ;TEEKTCDLVGEKGKESEKELALLKRLTPLFQKSFESTVGQSPDMYSYVFRVCREAGQHSSGAGLVQIQKSNGKETVVGRF NETQIFQGSNWIMLIYKGGDEYDNHCGREQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 GLU n 1 3 GLU n 1 4 LYS n 1 5 THR n 1 6 CYS n 1 7 ASP n 1 8 LEU n 1 9 VAL n 1 10 GLY n 1 11 GLU n 1 12 LYS n 1 13 GLY n 1 14 LYS n 1 15 GLU n 1 16 SER n 1 17 GLU n 1 18 LYS n 1 19 GLU n 1 20 LEU n 1 21 ALA n 1 22 LEU n 1 23 LEU n 1 24 LYS n 1 25 ARG n 1 26 LEU n 1 27 THR n 1 28 PRO n 1 29 LEU n 1 30 PHE n 1 31 GLN n 1 32 LYS n 1 33 SER n 1 34 PHE n 1 35 GLU n 1 36 SER n 1 37 THR n 1 38 VAL n 1 39 GLY n 1 40 GLN n 1 41 SER n 1 42 PRO n 1 43 ASP n 1 44 MET n 1 45 TYR n 1 46 SER n 1 47 TYR n 1 48 VAL n 1 49 PHE n 1 50 ARG n 1 51 VAL n 1 52 CYS n 1 53 ARG n 1 54 GLU n 1 55 ALA n 1 56 GLY n 1 57 GLN n 1 58 HIS n 1 59 SER n 1 60 SER n 1 61 GLY n 1 62 ALA n 1 63 GLY n 1 64 LEU n 1 65 VAL n 1 66 GLN n 1 67 ILE n 1 68 GLN n 1 69 LYS n 1 70 SER n 1 71 ASN n 1 72 GLY n 1 73 LYS n 1 74 GLU n 1 75 THR n 1 76 VAL n 1 77 VAL n 1 78 GLY n 1 79 ARG n 1 80 PHE n 1 81 ASN n 1 82 GLU n 1 83 THR n 1 84 GLN n 1 85 ILE n 1 86 PHE n 1 87 GLN n 1 88 GLY n 1 89 SER n 1 90 ASN n 1 91 TRP n 1 92 ILE n 1 93 MET n 1 94 LEU n 1 95 ILE n 1 96 TYR n 1 97 LYS n 1 98 GLY n 1 99 GLY n 1 100 ASP n 1 101 GLU n 1 102 TYR n 1 103 ASP n 1 104 ASN n 1 105 HIS n 1 106 CYS n 1 107 GLY n 1 108 ARG n 1 109 GLU n 1 110 GLN n 1 111 ARG n 1 112 ARG n 1 113 ALA n 1 114 VAL n 1 115 VAL n 1 116 MET n 1 117 ILE n 1 118 SER n 1 119 CYS n 1 120 ASN n 1 121 ARG n 1 122 HIS n 1 123 THR n 1 124 LEU n 1 125 ALA n 1 126 ASP n 1 127 ASN n 1 128 PHE n 1 129 ASN n 1 130 PRO n 1 131 VAL n 1 132 SER n 1 133 GLU n 1 134 GLU n 1 135 ARG n 1 136 GLY n 1 137 LYS n 1 138 VAL n 1 139 GLN n 1 140 ASP n 1 141 CYS n 1 142 PHE n 1 143 TYR n 1 144 LEU n 1 145 PHE n 1 146 GLU n 1 147 MET n 1 148 ASP n 1 149 SER n 1 150 SER n 1 151 LEU n 1 152 ALA n 1 153 CYS n 1 154 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name cattle _entity_src_gen.gene_src_genus Bos _entity_src_gen.pdbx_gene_src_gene M6PR _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bos taurus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9913 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'fall armyworm' _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus Spodoptera _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain Sf9 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Baculovirus _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MPRD_BOVIN _struct_ref.pdbx_db_accession P11456 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TEEKTCDLVGEKGKESEKELALLKRLTPLFNKSFESTVGQSPDMYSYVFRVCREAGNHSSGAGLVQINKSNGKETVVGRF NETQIFNGSNWIMLIYKGGDEYDNHCGREQRRAVVMISCNRHTLADNFNPVSEERGKVQDCFYLFEMDSSLACS ; _struct_ref.pdbx_align_begin 29 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3CY4 A 1 ? 154 ? P11456 29 ? 182 ? 1 154 2 1 3CY4 B 1 ? 154 ? P11456 29 ? 182 ? 1 154 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3CY4 GLN A 31 ? UNP P11456 ASN 59 'engineered mutation' 31 1 1 3CY4 GLN A 57 ? UNP P11456 ASN 85 'engineered mutation' 57 2 1 3CY4 GLN A 68 ? UNP P11456 ASN 96 'engineered mutation' 68 3 1 3CY4 GLN A 87 ? UNP P11456 ASN 115 'engineered mutation' 87 4 2 3CY4 GLN B 31 ? UNP P11456 ASN 59 'engineered mutation' 31 5 2 3CY4 GLN B 57 ? UNP P11456 ASN 85 'engineered mutation' 57 6 2 3CY4 GLN B 68 ? UNP P11456 ASN 96 'engineered mutation' 68 7 2 3CY4 GLN B 87 ? UNP P11456 ASN 115 'engineered mutation' 87 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3CY4 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.45 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 49.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.temp 292 _exptl_crystal_grow.pdbx_details '0.1M cacodylate, 25% PEG5000MME, 0.2M ammonium sulfate, pH 7.4, VAPOR DIFFUSION, temperature 292K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2006-09-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0083 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_wavelength_list 1.0083 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID # _reflns.entry_id 3CY4 _reflns.d_resolution_high 1.510 _reflns.d_resolution_low 50.000 _reflns.number_obs 48197 _reflns.pdbx_Rmerge_I_obs 0.112 _reflns.pdbx_netI_over_sigmaI 6.200 _reflns.pdbx_chi_squared 1.107 _reflns.pdbx_redundancy 6.400 _reflns.percent_possible_obs 91.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.51 1.56 ? ? ? 0.724 ? ? 0.994 2.40 ? 2494 47.50 1 1 1.56 1.63 ? ? ? 0.674 ? ? 1.040 3.50 ? 3870 73.20 2 1 1.63 1.70 ? ? ? 0.603 ? ? 1.033 4.60 ? 4752 90.40 3 1 1.70 1.79 ? ? ? 0.520 ? ? 1.048 6.10 ? 5229 98.70 4 1 1.79 1.90 ? ? ? 0.389 ? ? 1.080 7.20 ? 5301 100.00 5 1 1.90 2.05 ? ? ? 0.237 ? ? 1.118 7.50 ? 5237 100.00 6 1 2.05 2.26 ? ? ? 0.160 ? ? 1.134 7.50 ? 5307 100.00 7 1 2.26 2.58 ? ? ? 0.120 ? ? 1.134 7.50 ? 5306 100.00 8 1 2.58 3.25 ? ? ? 0.084 ? ? 1.304 7.40 ? 5314 100.00 9 1 3.25 50.00 ? ? ? 0.037 ? ? 0.988 7.40 ? 5387 99.90 10 1 # _refine.entry_id 3CY4 _refine.ls_d_res_high 1.510 _refine.ls_d_res_low 50.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 84.300 _refine.ls_number_reflns_obs 44565 _refine.ls_R_factor_R_work 0.206 _refine.ls_R_factor_R_free 0.229 _refine.ls_percent_reflns_R_free 7.500 _refine.ls_number_reflns_R_free 3972 _refine.B_iso_mean 14.030 _refine.solvent_model_param_bsol 36.361 _refine.aniso_B[1][1] 0.359 _refine.aniso_B[2][2] 1.131 _refine.aniso_B[3][3] -1.490 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.021 _refine.aniso_B[2][3] 0.000 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2412 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 128 _refine_hist.number_atoms_solvent 334 _refine_hist.number_atoms_total 2874 _refine_hist.d_res_high 1.510 _refine_hist.d_res_low 50.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_mcbond_it ? 1.074 1.500 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? 1.983 2.000 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 1.618 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? 2.940 2.500 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param ? 'X-RAY DIFFRACTION' 2 carbohydrate.param ? 'X-RAY DIFFRACTION' 3 water.param ? 'X-RAY DIFFRACTION' 4 gly.par ? 'X-RAY DIFFRACTION' # _struct.entry_id 3CY4 _struct.title 'Crystal Structure cation-dependent mannose 6-phosphate receptor at pH 7.4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3CY4 _struct_keywords.text ;P-type lectin, receptor, mannose 6-phosphate, lectin, Glycoprotein, Lysosome, Membrane, Transmembrane, Transport, PROTEIN TRANSPORT, SUGAR BINDING PROTEIN ; _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 16 ? THR A 27 ? SER A 16 THR A 27 1 ? 12 HELX_P HELX_P2 2 PRO A 28 ? PHE A 30 ? PRO A 28 PHE A 30 5 ? 3 HELX_P HELX_P3 3 HIS A 105 ? GLU A 109 ? HIS A 105 GLU A 109 5 ? 5 HELX_P HELX_P4 4 SER A 150 ? CYS A 153 ? SER A 150 CYS A 153 5 ? 4 HELX_P HELX_P5 5 SER B 16 ? LEU B 26 ? SER B 16 LEU B 26 1 ? 11 HELX_P HELX_P6 6 THR B 27 ? PHE B 30 ? THR B 27 PHE B 30 5 ? 4 HELX_P HELX_P7 7 HIS B 105 ? GLU B 109 ? HIS B 105 GLU B 109 5 ? 5 HELX_P HELX_P8 8 SER B 150 ? CYS B 153 ? SER B 150 CYS B 153 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 52 SG ? ? A CYS 6 A CYS 52 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf2 disulf ? ? A CYS 106 SG ? ? ? 1_555 A CYS 141 SG ? ? A CYS 106 A CYS 141 1_555 ? ? ? ? ? ? ? 2.025 ? ? disulf3 disulf ? ? A CYS 119 SG ? ? ? 1_555 A CYS 153 SG ? ? A CYS 119 A CYS 153 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf4 disulf ? ? B CYS 6 SG ? ? ? 1_555 B CYS 52 SG ? ? B CYS 6 B CYS 52 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf5 disulf ? ? B CYS 106 SG ? ? ? 1_555 B CYS 141 SG ? ? B CYS 106 B CYS 141 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf6 disulf ? ? B CYS 119 SG ? ? ? 1_555 B CYS 153 SG ? ? B CYS 119 B CYS 153 1_555 ? ? ? ? ? ? ? 2.032 ? ? covale1 covale one ? A ASN 81 OD1 ? ? ? 1_555 C NAG . C1 ? ? A ASN 81 C NAG 1 1_555 ? ? ? ? ? ? ? 1.389 ? ? covale2 covale one ? B ASN 81 OD1 ? ? ? 1_555 D NAG . C1 ? ? B ASN 81 D NAG 1 1_555 ? ? ? ? ? ? ? 1.406 ? ? covale3 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.385 ? ? covale4 covale both ? C NAG . O4 ? ? ? 1_555 C MAN . C1 ? ? C NAG 2 C MAN 3 1_555 ? ? ? ? ? ? ? 1.384 ? ? covale5 covale both ? C MAN . O3 ? ? ? 1_555 C MAN . C1 ? ? C MAN 3 C MAN 4 1_555 ? ? ? ? ? ? ? 1.398 ? ? covale6 covale both ? C MAN . O6 ? ? ? 1_555 C MAN . C1 ? ? C MAN 3 C MAN 5 1_555 ? ? ? ? ? ? ? 1.399 ? ? covale7 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? D NAG 1 D NAG 2 1_555 ? ? ? ? ? ? ? 1.388 ? ? covale8 covale both ? D NAG . O4 ? ? ? 1_555 D MAN . C1 ? ? D NAG 2 D MAN 3 1_555 ? ? ? ? ? ? ? 1.383 ? ? covale9 covale both ? D MAN . O3 ? ? ? 1_555 D MAN . C1 ? ? D MAN 3 D MAN 4 1_555 ? ? ? ? ? ? ? 1.398 ? ? covale10 covale both ? D MAN . O6 ? ? ? 1_555 D MAN . C1 ? ? D MAN 3 D MAN 5 1_555 ? ? ? ? ? ? ? 1.402 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 41 A . ? SER 41 A PRO 42 A ? PRO 42 A 1 0.04 2 SER 41 B . ? SER 41 B PRO 42 B ? PRO 42 B 1 0.05 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? parallel B 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 34 ? VAL A 38 ? PHE A 34 VAL A 38 A 2 TYR A 45 ? PHE A 49 ? TYR A 45 PHE A 49 A 3 ALA A 62 ? GLN A 68 ? ALA A 62 GLN A 68 A 4 GLU A 74 ? GLN A 87 ? GLU A 74 GLN A 87 A 5 TRP A 91 ? GLY A 98 ? TRP A 91 GLY A 98 A 6 ALA A 113 ? CYS A 119 ? ALA A 113 CYS A 119 A 7 PHE A 142 ? SER A 149 ? PHE A 142 SER A 149 A 8 ASP A 126 ? GLU A 134 ? ASP A 126 GLU A 134 B 1 PHE B 34 ? VAL B 38 ? PHE B 34 VAL B 38 B 2 TYR B 45 ? PHE B 49 ? TYR B 45 PHE B 49 B 3 ALA B 62 ? GLN B 68 ? ALA B 62 GLN B 68 B 4 GLU B 74 ? GLN B 87 ? GLU B 74 GLN B 87 B 5 TRP B 91 ? GLY B 98 ? TRP B 91 GLY B 98 B 6 ALA B 113 ? CYS B 119 ? ALA B 113 CYS B 119 B 7 PHE B 142 ? SER B 149 ? PHE B 142 SER B 149 B 8 ASP B 126 ? GLU B 134 ? ASP B 126 GLU B 134 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 36 ? N SER A 36 O TYR A 47 ? O TYR A 47 A 2 3 N SER A 46 ? N SER A 46 O ILE A 67 ? O ILE A 67 A 3 4 N GLN A 66 ? N GLN A 66 O THR A 75 ? O THR A 75 A 4 5 N GLN A 84 ? N GLN A 84 O ILE A 95 ? O ILE A 95 A 5 6 N ILE A 92 ? N ILE A 92 O ILE A 117 ? O ILE A 117 A 6 7 N MET A 116 ? N MET A 116 O PHE A 145 ? O PHE A 145 A 7 8 O LEU A 144 ? O LEU A 144 N SER A 132 ? N SER A 132 B 1 2 N PHE B 34 ? N PHE B 34 O PHE B 49 ? O PHE B 49 B 2 3 N SER B 46 ? N SER B 46 O ILE B 67 ? O ILE B 67 B 3 4 N GLN B 66 ? N GLN B 66 O THR B 75 ? O THR B 75 B 4 5 N GLN B 84 ? N GLN B 84 O ILE B 95 ? O ILE B 95 B 5 6 N ILE B 92 ? N ILE B 92 O ILE B 117 ? O ILE B 117 B 6 7 N MET B 116 ? N MET B 116 O PHE B 145 ? O PHE B 145 B 7 8 O GLU B 146 ? O GLU B 146 N ASN B 129 ? N ASN B 129 # _database_PDB_matrix.entry_id 3CY4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3CY4 _atom_sites.fract_transf_matrix[1][1] 0.023972 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001958 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013482 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018073 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'MAN C 3 HAS WRONG CHIRALITY AT ATOM C1' 2 'MAN D 3 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 ? ? ? A . n A 1 2 GLU 2 2 ? ? ? A . n A 1 3 GLU 3 3 ? ? ? A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 MET 44 44 44 MET MET A . n A 1 45 TYR 45 45 45 TYR TYR A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 CYS 52 52 52 CYS CYS A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 HIS 58 58 58 HIS HIS A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 GLN 66 66 66 GLN GLN A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 GLN 68 68 68 GLN GLN A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 GLN 84 84 84 GLN GLN A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 GLN 87 87 87 GLN GLN A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 TRP 91 91 91 TRP TRP A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 MET 93 93 93 MET MET A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 ILE 95 95 95 ILE ILE A . n A 1 96 TYR 96 96 96 TYR TYR A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 TYR 102 102 102 TYR TYR A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 ASN 104 104 104 ASN ASN A . n A 1 105 HIS 105 105 105 HIS HIS A . n A 1 106 CYS 106 106 106 CYS CYS A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 GLN 110 110 110 GLN GLN A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 MET 116 116 116 MET MET A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 CYS 119 119 119 CYS CYS A . n A 1 120 ASN 120 120 120 ASN ASN A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 HIS 122 122 122 HIS HIS A . n A 1 123 THR 123 123 123 THR THR A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 ASN 127 127 127 ASN ASN A . n A 1 128 PHE 128 128 128 PHE PHE A . n A 1 129 ASN 129 129 129 ASN ASN A . n A 1 130 PRO 130 130 130 PRO PRO A . n A 1 131 VAL 131 131 131 VAL VAL A . n A 1 132 SER 132 132 132 SER SER A . n A 1 133 GLU 133 133 133 GLU GLU A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 ARG 135 135 135 ARG ARG A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 GLN 139 139 139 GLN GLN A . n A 1 140 ASP 140 140 140 ASP ASP A . n A 1 141 CYS 141 141 141 CYS CYS A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 TYR 143 143 143 TYR TYR A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 PHE 145 145 145 PHE PHE A . n A 1 146 GLU 146 146 146 GLU GLU A . n A 1 147 MET 147 147 147 MET MET A . n A 1 148 ASP 148 148 148 ASP ASP A . n A 1 149 SER 149 149 149 SER SER A . n A 1 150 SER 150 150 150 SER SER A . n A 1 151 LEU 151 151 151 LEU LEU A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 CYS 153 153 153 CYS CYS A . n A 1 154 SER 154 154 154 SER SER A . n B 1 1 THR 1 1 1 THR THR B . n B 1 2 GLU 2 2 2 GLU GLU B . n B 1 3 GLU 3 3 3 GLU GLU B . n B 1 4 LYS 4 4 4 LYS LYS B . n B 1 5 THR 5 5 5 THR THR B . n B 1 6 CYS 6 6 6 CYS CYS B . n B 1 7 ASP 7 7 7 ASP ASP B . n B 1 8 LEU 8 8 8 LEU LEU B . n B 1 9 VAL 9 9 9 VAL VAL B . n B 1 10 GLY 10 10 10 GLY GLY B . n B 1 11 GLU 11 11 11 GLU GLU B . n B 1 12 LYS 12 12 12 LYS LYS B . n B 1 13 GLY 13 13 13 GLY GLY B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 GLU 15 15 15 GLU GLU B . n B 1 16 SER 16 16 16 SER SER B . n B 1 17 GLU 17 17 17 GLU GLU B . n B 1 18 LYS 18 18 18 LYS LYS B . n B 1 19 GLU 19 19 19 GLU GLU B . n B 1 20 LEU 20 20 20 LEU LEU B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 LEU 22 22 22 LEU LEU B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 LYS 24 24 24 LYS LYS B . n B 1 25 ARG 25 25 25 ARG ARG B . n B 1 26 LEU 26 26 26 LEU LEU B . n B 1 27 THR 27 27 27 THR THR B . n B 1 28 PRO 28 28 28 PRO PRO B . n B 1 29 LEU 29 29 29 LEU LEU B . n B 1 30 PHE 30 30 30 PHE PHE B . n B 1 31 GLN 31 31 31 GLN GLN B . n B 1 32 LYS 32 32 32 LYS LYS B . n B 1 33 SER 33 33 33 SER SER B . n B 1 34 PHE 34 34 34 PHE PHE B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 SER 36 36 36 SER SER B . n B 1 37 THR 37 37 37 THR THR B . n B 1 38 VAL 38 38 38 VAL VAL B . n B 1 39 GLY 39 39 39 GLY GLY B . n B 1 40 GLN 40 40 40 GLN GLN B . n B 1 41 SER 41 41 41 SER SER B . n B 1 42 PRO 42 42 42 PRO PRO B . n B 1 43 ASP 43 43 43 ASP ASP B . n B 1 44 MET 44 44 44 MET MET B . n B 1 45 TYR 45 45 45 TYR TYR B . n B 1 46 SER 46 46 46 SER SER B . n B 1 47 TYR 47 47 47 TYR TYR B . n B 1 48 VAL 48 48 48 VAL VAL B . n B 1 49 PHE 49 49 49 PHE PHE B . n B 1 50 ARG 50 50 50 ARG ARG B . n B 1 51 VAL 51 51 51 VAL VAL B . n B 1 52 CYS 52 52 52 CYS CYS B . n B 1 53 ARG 53 53 53 ARG ARG B . n B 1 54 GLU 54 54 54 GLU GLU B . n B 1 55 ALA 55 55 55 ALA ALA B . n B 1 56 GLY 56 56 56 GLY GLY B . n B 1 57 GLN 57 57 57 GLN GLN B . n B 1 58 HIS 58 58 58 HIS HIS B . n B 1 59 SER 59 59 59 SER SER B . n B 1 60 SER 60 60 60 SER SER B . n B 1 61 GLY 61 61 61 GLY GLY B . n B 1 62 ALA 62 62 62 ALA ALA B . n B 1 63 GLY 63 63 63 GLY GLY B . n B 1 64 LEU 64 64 64 LEU LEU B . n B 1 65 VAL 65 65 65 VAL VAL B . n B 1 66 GLN 66 66 66 GLN GLN B . n B 1 67 ILE 67 67 67 ILE ILE B . n B 1 68 GLN 68 68 68 GLN GLN B . n B 1 69 LYS 69 69 69 LYS LYS B . n B 1 70 SER 70 70 70 SER SER B . n B 1 71 ASN 71 71 71 ASN ASN B . n B 1 72 GLY 72 72 72 GLY GLY B . n B 1 73 LYS 73 73 73 LYS LYS B . n B 1 74 GLU 74 74 74 GLU GLU B . n B 1 75 THR 75 75 75 THR THR B . n B 1 76 VAL 76 76 76 VAL VAL B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 ARG 79 79 79 ARG ARG B . n B 1 80 PHE 80 80 80 PHE PHE B . n B 1 81 ASN 81 81 81 ASN ASN B . n B 1 82 GLU 82 82 82 GLU GLU B . n B 1 83 THR 83 83 83 THR THR B . n B 1 84 GLN 84 84 84 GLN GLN B . n B 1 85 ILE 85 85 85 ILE ILE B . n B 1 86 PHE 86 86 86 PHE PHE B . n B 1 87 GLN 87 87 87 GLN GLN B . n B 1 88 GLY 88 88 88 GLY GLY B . n B 1 89 SER 89 89 89 SER SER B . n B 1 90 ASN 90 90 90 ASN ASN B . n B 1 91 TRP 91 91 91 TRP TRP B . n B 1 92 ILE 92 92 92 ILE ILE B . n B 1 93 MET 93 93 93 MET MET B . n B 1 94 LEU 94 94 94 LEU LEU B . n B 1 95 ILE 95 95 95 ILE ILE B . n B 1 96 TYR 96 96 96 TYR TYR B . n B 1 97 LYS 97 97 97 LYS LYS B . n B 1 98 GLY 98 98 98 GLY GLY B . n B 1 99 GLY 99 99 99 GLY GLY B . n B 1 100 ASP 100 100 100 ASP ASP B . n B 1 101 GLU 101 101 101 GLU GLU B . n B 1 102 TYR 102 102 102 TYR TYR B . n B 1 103 ASP 103 103 103 ASP ASP B . n B 1 104 ASN 104 104 104 ASN ASN B . n B 1 105 HIS 105 105 105 HIS HIS B . n B 1 106 CYS 106 106 106 CYS CYS B . n B 1 107 GLY 107 107 107 GLY GLY B . n B 1 108 ARG 108 108 108 ARG ARG B . n B 1 109 GLU 109 109 109 GLU GLU B . n B 1 110 GLN 110 110 110 GLN GLN B . n B 1 111 ARG 111 111 111 ARG ARG B . n B 1 112 ARG 112 112 112 ARG ARG B . n B 1 113 ALA 113 113 113 ALA ALA B . n B 1 114 VAL 114 114 114 VAL VAL B . n B 1 115 VAL 115 115 115 VAL VAL B . n B 1 116 MET 116 116 116 MET MET B . n B 1 117 ILE 117 117 117 ILE ILE B . n B 1 118 SER 118 118 118 SER SER B . n B 1 119 CYS 119 119 119 CYS CYS B . n B 1 120 ASN 120 120 120 ASN ASN B . n B 1 121 ARG 121 121 121 ARG ARG B . n B 1 122 HIS 122 122 122 HIS HIS B . n B 1 123 THR 123 123 123 THR THR B . n B 1 124 LEU 124 124 124 LEU LEU B . n B 1 125 ALA 125 125 125 ALA ALA B . n B 1 126 ASP 126 126 126 ASP ASP B . n B 1 127 ASN 127 127 127 ASN ASN B . n B 1 128 PHE 128 128 128 PHE PHE B . n B 1 129 ASN 129 129 129 ASN ASN B . n B 1 130 PRO 130 130 130 PRO PRO B . n B 1 131 VAL 131 131 131 VAL VAL B . n B 1 132 SER 132 132 132 SER SER B . n B 1 133 GLU 133 133 133 GLU GLU B . n B 1 134 GLU 134 134 134 GLU GLU B . n B 1 135 ARG 135 135 135 ARG ARG B . n B 1 136 GLY 136 136 136 GLY GLY B . n B 1 137 LYS 137 137 137 LYS LYS B . n B 1 138 VAL 138 138 138 VAL VAL B . n B 1 139 GLN 139 139 139 GLN GLN B . n B 1 140 ASP 140 140 140 ASP ASP B . n B 1 141 CYS 141 141 141 CYS CYS B . n B 1 142 PHE 142 142 142 PHE PHE B . n B 1 143 TYR 143 143 143 TYR TYR B . n B 1 144 LEU 144 144 144 LEU LEU B . n B 1 145 PHE 145 145 145 PHE PHE B . n B 1 146 GLU 146 146 146 GLU GLU B . n B 1 147 MET 147 147 147 MET MET B . n B 1 148 ASP 148 148 148 ASP ASP B . n B 1 149 SER 149 149 149 SER SER B . n B 1 150 SER 150 150 150 SER SER B . n B 1 151 LEU 151 151 151 LEU LEU B . n B 1 152 ALA 152 152 152 ALA ALA B . n B 1 153 CYS 153 153 153 CYS CYS B . n B 1 154 SER 154 154 154 SER SER B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL 1 4009 4009 GOL GOL A . F 4 HOH 1 4010 3 HOH WAT A . F 4 HOH 2 4011 4 HOH WAT A . F 4 HOH 3 4012 10 HOH WAT A . F 4 HOH 4 4013 13 HOH WAT A . F 4 HOH 5 4014 16 HOH WAT A . F 4 HOH 6 4015 17 HOH WAT A . F 4 HOH 7 4016 18 HOH WAT A . F 4 HOH 8 4017 20 HOH WAT A . F 4 HOH 9 4018 21 HOH WAT A . F 4 HOH 10 4019 25 HOH WAT A . F 4 HOH 11 4020 28 HOH WAT A . F 4 HOH 12 4021 31 HOH WAT A . F 4 HOH 13 4022 33 HOH WAT A . F 4 HOH 14 4023 37 HOH WAT A . F 4 HOH 15 4024 43 HOH WAT A . F 4 HOH 16 4025 46 HOH WAT A . F 4 HOH 17 4026 47 HOH WAT A . F 4 HOH 18 4027 48 HOH WAT A . F 4 HOH 19 4028 51 HOH WAT A . F 4 HOH 20 4029 52 HOH WAT A . F 4 HOH 21 4030 53 HOH WAT A . F 4 HOH 22 4031 54 HOH WAT A . F 4 HOH 23 4032 55 HOH WAT A . F 4 HOH 24 4033 58 HOH WAT A . F 4 HOH 25 4034 59 HOH WAT A . F 4 HOH 26 4035 62 HOH WAT A . F 4 HOH 27 4036 65 HOH WAT A . F 4 HOH 28 4037 66 HOH WAT A . F 4 HOH 29 4038 67 HOH WAT A . F 4 HOH 30 4039 69 HOH WAT A . F 4 HOH 31 4040 71 HOH WAT A . F 4 HOH 32 4041 72 HOH WAT A . F 4 HOH 33 4042 76 HOH WAT A . F 4 HOH 34 4043 78 HOH WAT A . F 4 HOH 35 4044 83 HOH WAT A . F 4 HOH 36 4045 84 HOH WAT A . F 4 HOH 37 4046 88 HOH WAT A . F 4 HOH 38 4047 91 HOH WAT A . F 4 HOH 39 4048 97 HOH WAT A . F 4 HOH 40 4049 98 HOH WAT A . F 4 HOH 41 4050 99 HOH WAT A . F 4 HOH 42 4051 100 HOH WAT A . F 4 HOH 43 4052 101 HOH WAT A . F 4 HOH 44 4053 103 HOH WAT A . F 4 HOH 45 4054 104 HOH WAT A . F 4 HOH 46 4055 108 HOH WAT A . F 4 HOH 47 4056 110 HOH WAT A . F 4 HOH 48 4057 111 HOH WAT A . F 4 HOH 49 4058 113 HOH WAT A . F 4 HOH 50 4059 116 HOH WAT A . F 4 HOH 51 4060 118 HOH WAT A . F 4 HOH 52 4061 119 HOH WAT A . F 4 HOH 53 4062 122 HOH WAT A . F 4 HOH 54 4063 124 HOH WAT A . F 4 HOH 55 4064 125 HOH WAT A . F 4 HOH 56 4065 126 HOH WAT A . F 4 HOH 57 4066 127 HOH WAT A . F 4 HOH 58 4067 134 HOH WAT A . F 4 HOH 59 4068 135 HOH WAT A . F 4 HOH 60 4069 136 HOH WAT A . F 4 HOH 61 4070 137 HOH WAT A . F 4 HOH 62 4071 139 HOH WAT A . F 4 HOH 63 4072 141 HOH WAT A . F 4 HOH 64 4073 146 HOH WAT A . F 4 HOH 65 4074 148 HOH WAT A . F 4 HOH 66 4075 150 HOH WAT A . F 4 HOH 67 4076 151 HOH WAT A . F 4 HOH 68 4077 156 HOH WAT A . F 4 HOH 69 4078 157 HOH WAT A . F 4 HOH 70 4079 161 HOH WAT A . F 4 HOH 71 4080 163 HOH WAT A . F 4 HOH 72 4081 165 HOH WAT A . F 4 HOH 73 4082 167 HOH WAT A . F 4 HOH 74 4083 168 HOH WAT A . F 4 HOH 75 4084 171 HOH WAT A . F 4 HOH 76 4085 174 HOH WAT A . F 4 HOH 77 4086 176 HOH WAT A . F 4 HOH 78 4087 179 HOH WAT A . F 4 HOH 79 4088 181 HOH WAT A . F 4 HOH 80 4089 184 HOH WAT A . F 4 HOH 81 4090 185 HOH WAT A . F 4 HOH 82 4091 189 HOH WAT A . F 4 HOH 83 4092 191 HOH WAT A . F 4 HOH 84 4093 196 HOH WAT A . F 4 HOH 85 4094 197 HOH WAT A . F 4 HOH 86 4095 198 HOH WAT A . F 4 HOH 87 4096 199 HOH WAT A . F 4 HOH 88 4097 201 HOH WAT A . F 4 HOH 89 4098 204 HOH WAT A . F 4 HOH 90 4099 206 HOH WAT A . F 4 HOH 91 4100 210 HOH WAT A . F 4 HOH 92 4101 211 HOH WAT A . F 4 HOH 93 4102 212 HOH WAT A . F 4 HOH 94 4103 214 HOH WAT A . F 4 HOH 95 4104 216 HOH WAT A . F 4 HOH 96 4105 218 HOH WAT A . F 4 HOH 97 4106 219 HOH WAT A . F 4 HOH 98 4107 220 HOH WAT A . F 4 HOH 99 4108 222 HOH WAT A . F 4 HOH 100 4109 225 HOH WAT A . F 4 HOH 101 4110 227 HOH WAT A . F 4 HOH 102 4111 228 HOH WAT A . F 4 HOH 103 4112 231 HOH WAT A . F 4 HOH 104 4113 232 HOH WAT A . F 4 HOH 105 4114 234 HOH WAT A . F 4 HOH 106 4115 235 HOH WAT A . F 4 HOH 107 4116 239 HOH WAT A . F 4 HOH 108 4117 240 HOH WAT A . F 4 HOH 109 4118 241 HOH WAT A . F 4 HOH 110 4119 242 HOH WAT A . F 4 HOH 111 4120 244 HOH WAT A . F 4 HOH 112 4121 245 HOH WAT A . F 4 HOH 113 4122 248 HOH WAT A . F 4 HOH 114 4123 254 HOH WAT A . F 4 HOH 115 4124 255 HOH WAT A . F 4 HOH 116 4125 257 HOH WAT A . F 4 HOH 117 4126 258 HOH WAT A . F 4 HOH 118 4127 260 HOH WAT A . F 4 HOH 119 4128 261 HOH WAT A . F 4 HOH 120 4129 263 HOH WAT A . F 4 HOH 121 4130 267 HOH WAT A . F 4 HOH 122 4131 269 HOH WAT A . F 4 HOH 123 4132 270 HOH WAT A . F 4 HOH 124 4133 274 HOH WAT A . F 4 HOH 125 4134 276 HOH WAT A . F 4 HOH 126 4135 277 HOH WAT A . F 4 HOH 127 4136 278 HOH WAT A . F 4 HOH 128 4137 279 HOH WAT A . F 4 HOH 129 4138 280 HOH WAT A . F 4 HOH 130 4139 283 HOH WAT A . F 4 HOH 131 4140 284 HOH WAT A . F 4 HOH 132 4141 285 HOH WAT A . F 4 HOH 133 4142 286 HOH WAT A . F 4 HOH 134 4143 287 HOH WAT A . F 4 HOH 135 4144 288 HOH WAT A . F 4 HOH 136 4145 289 HOH WAT A . F 4 HOH 137 4146 290 HOH WAT A . F 4 HOH 138 4147 296 HOH WAT A . F 4 HOH 139 4148 297 HOH WAT A . F 4 HOH 140 4149 299 HOH WAT A . F 4 HOH 141 4150 302 HOH WAT A . F 4 HOH 142 4151 310 HOH WAT A . F 4 HOH 143 4152 318 HOH WAT A . F 4 HOH 144 4153 319 HOH WAT A . F 4 HOH 145 4154 320 HOH WAT A . F 4 HOH 146 4155 321 HOH WAT A . F 4 HOH 147 4156 322 HOH WAT A . F 4 HOH 148 4157 324 HOH WAT A . F 4 HOH 149 4158 326 HOH WAT A . F 4 HOH 150 4159 329 HOH WAT A . F 4 HOH 151 4160 330 HOH WAT A . F 4 HOH 152 4161 331 HOH WAT A . F 4 HOH 153 4162 333 HOH WAT A . F 4 HOH 154 4163 334 HOH WAT A . F 4 HOH 155 4164 338 HOH WAT A . F 4 HOH 156 4165 344 HOH WAT A . F 4 HOH 157 4166 347 HOH WAT A . F 4 HOH 158 4167 349 HOH WAT A . F 4 HOH 159 4168 351 HOH WAT A . F 4 HOH 160 4169 352 HOH WAT A . F 4 HOH 161 4170 355 HOH WAT A . F 4 HOH 162 4171 356 HOH WAT A . F 4 HOH 163 4172 357 HOH WAT A . F 4 HOH 164 4173 359 HOH WAT A . F 4 HOH 165 4174 360 HOH WAT A . F 4 HOH 166 4175 361 HOH WAT A . G 4 HOH 1 4006 1 HOH WAT B . G 4 HOH 2 4007 2 HOH WAT B . G 4 HOH 3 4008 5 HOH WAT B . G 4 HOH 4 4009 6 HOH WAT B . G 4 HOH 5 4010 7 HOH WAT B . G 4 HOH 6 4011 8 HOH WAT B . G 4 HOH 7 4012 9 HOH WAT B . G 4 HOH 8 4013 11 HOH WAT B . G 4 HOH 9 4014 12 HOH WAT B . G 4 HOH 10 4015 14 HOH WAT B . G 4 HOH 11 4016 15 HOH WAT B . G 4 HOH 12 4017 19 HOH WAT B . G 4 HOH 13 4018 22 HOH WAT B . G 4 HOH 14 4019 23 HOH WAT B . G 4 HOH 15 4020 24 HOH WAT B . G 4 HOH 16 4021 26 HOH WAT B . G 4 HOH 17 4022 27 HOH WAT B . G 4 HOH 18 4023 29 HOH WAT B . G 4 HOH 19 4024 30 HOH WAT B . G 4 HOH 20 4025 32 HOH WAT B . G 4 HOH 21 4026 34 HOH WAT B . G 4 HOH 22 4027 35 HOH WAT B . G 4 HOH 23 4028 36 HOH WAT B . G 4 HOH 24 4029 38 HOH WAT B . G 4 HOH 25 4030 39 HOH WAT B . G 4 HOH 26 4031 40 HOH WAT B . G 4 HOH 27 4032 41 HOH WAT B . G 4 HOH 28 4033 42 HOH WAT B . G 4 HOH 29 4034 44 HOH WAT B . G 4 HOH 30 4035 45 HOH WAT B . G 4 HOH 31 4036 49 HOH WAT B . G 4 HOH 32 4037 56 HOH WAT B . G 4 HOH 33 4038 57 HOH WAT B . G 4 HOH 34 4039 60 HOH WAT B . G 4 HOH 35 4040 61 HOH WAT B . G 4 HOH 36 4041 63 HOH WAT B . G 4 HOH 37 4042 64 HOH WAT B . G 4 HOH 38 4043 68 HOH WAT B . G 4 HOH 39 4044 70 HOH WAT B . G 4 HOH 40 4045 73 HOH WAT B . G 4 HOH 41 4046 74 HOH WAT B . G 4 HOH 42 4047 75 HOH WAT B . G 4 HOH 43 4048 77 HOH WAT B . G 4 HOH 44 4049 79 HOH WAT B . G 4 HOH 45 4050 80 HOH WAT B . G 4 HOH 46 4051 81 HOH WAT B . G 4 HOH 47 4052 82 HOH WAT B . G 4 HOH 48 4053 85 HOH WAT B . G 4 HOH 49 4054 86 HOH WAT B . G 4 HOH 50 4055 87 HOH WAT B . G 4 HOH 51 4056 89 HOH WAT B . G 4 HOH 52 4057 90 HOH WAT B . G 4 HOH 53 4058 92 HOH WAT B . G 4 HOH 54 4059 93 HOH WAT B . G 4 HOH 55 4060 94 HOH WAT B . G 4 HOH 56 4061 95 HOH WAT B . G 4 HOH 57 4062 96 HOH WAT B . G 4 HOH 58 4063 102 HOH WAT B . G 4 HOH 59 4064 105 HOH WAT B . G 4 HOH 60 4065 107 HOH WAT B . G 4 HOH 61 4066 109 HOH WAT B . G 4 HOH 62 4067 112 HOH WAT B . G 4 HOH 63 4068 114 HOH WAT B . G 4 HOH 64 4069 115 HOH WAT B . G 4 HOH 65 4070 117 HOH WAT B . G 4 HOH 66 4071 120 HOH WAT B . G 4 HOH 67 4072 121 HOH WAT B . G 4 HOH 68 4073 123 HOH WAT B . G 4 HOH 69 4074 128 HOH WAT B . G 4 HOH 70 4075 129 HOH WAT B . G 4 HOH 71 4076 130 HOH WAT B . G 4 HOH 72 4077 131 HOH WAT B . G 4 HOH 73 4078 132 HOH WAT B . G 4 HOH 74 4079 133 HOH WAT B . G 4 HOH 75 4080 138 HOH WAT B . G 4 HOH 76 4081 140 HOH WAT B . G 4 HOH 77 4082 143 HOH WAT B . G 4 HOH 78 4083 144 HOH WAT B . G 4 HOH 79 4084 145 HOH WAT B . G 4 HOH 80 4085 147 HOH WAT B . G 4 HOH 81 4086 149 HOH WAT B . G 4 HOH 82 4087 152 HOH WAT B . G 4 HOH 83 4088 153 HOH WAT B . G 4 HOH 84 4089 154 HOH WAT B . G 4 HOH 85 4090 155 HOH WAT B . G 4 HOH 86 4091 158 HOH WAT B . G 4 HOH 87 4092 159 HOH WAT B . G 4 HOH 88 4093 160 HOH WAT B . G 4 HOH 89 4094 162 HOH WAT B . G 4 HOH 90 4095 166 HOH WAT B . G 4 HOH 91 4096 169 HOH WAT B . G 4 HOH 92 4097 170 HOH WAT B . G 4 HOH 93 4098 172 HOH WAT B . G 4 HOH 94 4099 173 HOH WAT B . G 4 HOH 95 4100 175 HOH WAT B . G 4 HOH 96 4101 180 HOH WAT B . G 4 HOH 97 4102 182 HOH WAT B . G 4 HOH 98 4103 183 HOH WAT B . G 4 HOH 99 4104 186 HOH WAT B . G 4 HOH 100 4105 188 HOH WAT B . G 4 HOH 101 4106 190 HOH WAT B . G 4 HOH 102 4107 192 HOH WAT B . G 4 HOH 103 4108 194 HOH WAT B . G 4 HOH 104 4109 202 HOH WAT B . G 4 HOH 105 4110 203 HOH WAT B . G 4 HOH 106 4111 205 HOH WAT B . G 4 HOH 107 4112 208 HOH WAT B . G 4 HOH 108 4113 209 HOH WAT B . G 4 HOH 109 4114 213 HOH WAT B . G 4 HOH 110 4115 215 HOH WAT B . G 4 HOH 111 4116 217 HOH WAT B . G 4 HOH 112 4117 221 HOH WAT B . G 4 HOH 113 4118 223 HOH WAT B . G 4 HOH 114 4119 224 HOH WAT B . G 4 HOH 115 4120 226 HOH WAT B . G 4 HOH 116 4121 229 HOH WAT B . G 4 HOH 117 4122 230 HOH WAT B . G 4 HOH 118 4123 233 HOH WAT B . G 4 HOH 119 4124 236 HOH WAT B . G 4 HOH 120 4125 237 HOH WAT B . G 4 HOH 121 4126 238 HOH WAT B . G 4 HOH 122 4127 243 HOH WAT B . G 4 HOH 123 4128 246 HOH WAT B . G 4 HOH 124 4129 247 HOH WAT B . G 4 HOH 125 4130 250 HOH WAT B . G 4 HOH 126 4131 251 HOH WAT B . G 4 HOH 127 4132 252 HOH WAT B . G 4 HOH 128 4133 253 HOH WAT B . G 4 HOH 129 4134 256 HOH WAT B . G 4 HOH 130 4135 259 HOH WAT B . G 4 HOH 131 4136 262 HOH WAT B . G 4 HOH 132 4137 264 HOH WAT B . G 4 HOH 133 4138 265 HOH WAT B . G 4 HOH 134 4139 266 HOH WAT B . G 4 HOH 135 4140 271 HOH WAT B . G 4 HOH 136 4141 275 HOH WAT B . G 4 HOH 137 4142 281 HOH WAT B . G 4 HOH 138 4143 282 HOH WAT B . G 4 HOH 139 4144 291 HOH WAT B . G 4 HOH 140 4145 292 HOH WAT B . G 4 HOH 141 4146 294 HOH WAT B . G 4 HOH 142 4147 295 HOH WAT B . G 4 HOH 143 4148 298 HOH WAT B . G 4 HOH 144 4149 303 HOH WAT B . G 4 HOH 145 4150 304 HOH WAT B . G 4 HOH 146 4151 305 HOH WAT B . G 4 HOH 147 4152 307 HOH WAT B . G 4 HOH 148 4153 308 HOH WAT B . G 4 HOH 149 4154 309 HOH WAT B . G 4 HOH 150 4155 312 HOH WAT B . G 4 HOH 151 4156 313 HOH WAT B . G 4 HOH 152 4157 314 HOH WAT B . G 4 HOH 153 4158 315 HOH WAT B . G 4 HOH 154 4159 316 HOH WAT B . G 4 HOH 155 4160 317 HOH WAT B . G 4 HOH 156 4161 323 HOH WAT B . G 4 HOH 157 4162 328 HOH WAT B . G 4 HOH 158 4163 335 HOH WAT B . G 4 HOH 159 4164 337 HOH WAT B . G 4 HOH 160 4165 339 HOH WAT B . G 4 HOH 161 4166 340 HOH WAT B . G 4 HOH 162 4167 341 HOH WAT B . G 4 HOH 163 4168 342 HOH WAT B . G 4 HOH 164 4169 345 HOH WAT B . G 4 HOH 165 4170 350 HOH WAT B . G 4 HOH 166 4171 353 HOH WAT B . G 4 HOH 167 4172 358 HOH WAT B . G 4 HOH 168 4173 362 HOH WAT B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 81 A ASN 81 ? ASN 'GLYCOSYLATION SITE' 2 B ASN 81 B ASN 81 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3920 ? 1 MORE -14.9 ? 1 'SSA (A^2)' 16690 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-05-13 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2021-10-20 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' atom_site 3 4 'Structure model' chem_comp 4 4 'Structure model' database_PDB_caveat 5 4 'Structure model' entity 6 4 'Structure model' pdbx_branch_scheme 7 4 'Structure model' pdbx_chem_comp_identifier 8 4 'Structure model' pdbx_entity_branch 9 4 'Structure model' pdbx_entity_branch_descriptor 10 4 'Structure model' pdbx_entity_branch_link 11 4 'Structure model' pdbx_entity_branch_list 12 4 'Structure model' pdbx_entity_nonpoly 13 4 'Structure model' pdbx_nonpoly_scheme 14 4 'Structure model' pdbx_struct_assembly_gen 15 4 'Structure model' pdbx_validate_chiral 16 4 'Structure model' pdbx_validate_close_contact 17 4 'Structure model' struct_asym 18 4 'Structure model' struct_conn 19 4 'Structure model' struct_site 20 4 'Structure model' struct_site_gen 21 5 'Structure model' chem_comp 22 5 'Structure model' database_2 23 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.type_symbol' 14 4 'Structure model' '_chem_comp.name' 15 4 'Structure model' '_chem_comp.type' 16 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 17 4 'Structure model' '_pdbx_validate_chiral.auth_asym_id' 18 4 'Structure model' '_pdbx_validate_chiral.auth_seq_id' 19 4 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2' 20 4 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 21 4 'Structure model' '_struct_conn.pdbx_dist_value' 22 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 23 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 5 'Structure model' '_chem_comp.pdbx_synonyms' 37 5 'Structure model' '_database_2.pdbx_DOI' 38 5 'Structure model' '_database_2.pdbx_database_accession' 39 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 3 PDB_EXTRACT 3.005 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 A ASN 81 ? ? O5 C NAG 1 ? ? 2.12 2 1 OD1 A ASN 81 ? ? C2 C NAG 1 ? ? 2.15 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 125 ? ? -170.25 131.43 2 1 ALA B 125 ? ? -170.87 130.91 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C1 ? C MAN 3 ? 'WRONG HAND' . 2 1 C1 ? D MAN 3 ? 'WRONG HAND' . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 1 ? A THR 1 2 1 Y 1 A GLU 2 ? A GLU 2 3 1 Y 1 A GLU 3 ? A GLU 3 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 NAG 1 C NAG 1 A NAG 3001 n C 2 NAG 2 C NAG 2 A NAG 3002 n C 2 MAN 3 C MAN 3 A MAN 3005 n C 2 MAN 4 C MAN 4 A MAN 3004 n C 2 MAN 5 C MAN 5 A MAN 3003 n D 2 NAG 1 D NAG 1 B NAG 4001 n D 2 NAG 2 D NAG 2 B NAG 4002 n D 2 MAN 3 D MAN 3 B MAN 4005 n D 2 MAN 4 D MAN 4 B MAN 4004 n D 2 MAN 5 D MAN 5 B MAN 4003 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DManpa1-3[DManpa1-6]DManpa1-4DGlcpNAcb1-4DGlcpNAcb1-ROH' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5]/1-1-2-2-2/a4-b1_b4-c1_c3-d1_c6-e1' WURCS PDB2Glycan 1.1.0 3 2 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 MAN C1 O1 2 NAG O4 HO4 sing ? 3 2 4 MAN C1 O1 3 MAN O3 HO3 sing ? 4 2 5 MAN C1 O1 3 MAN O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 MAN 3 n 2 MAN 4 n 2 MAN 5 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 water HOH #