HEADER PHEROMONE BINDING PROTEIN 27-APR-08 3CZ1 TITLE DIMERIC CRYSTAL STRUCTURE OF A PHEROMONE BINDING PROTEIN FROM APIS TITLE 2 MELLIFERA IN COMPLEX WITH THE N-BUTYL BENZENE SULFONAMIDE AT PH 7.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHEROMONE-BINDING PROTEIN ASP1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 26-144; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: APIS MELLIFERA; SOURCE 3 ORGANISM_COMMON: HONEYBEE; SOURCE 4 ORGANISM_TAXID: 7460; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHIL-D2 KEYWDS HONEY BEE, PHEROMONE BINDING PROTEIN, SIGNAL TRANSDUCTION, QUEEN KEYWDS 2 MANDIBULAR PHEROMONE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.PESENTI,S.SPINELLI,V.BEZIRARD,L.BRIAND,J.C.PERNOLLET,M.TEGONI, AUTHOR 2 C.CAMBILLAU REVDAT 5 01-NOV-23 3CZ1 1 REMARK LINK REVDAT 4 13-JUL-11 3CZ1 1 VERSN REVDAT 3 28-JUL-09 3CZ1 1 JRNL REVDAT 2 16-JUN-09 3CZ1 1 JRNL REVDAT 1 28-APR-09 3CZ1 0 JRNL AUTH M.E.PESENTI,S.SPINELLI,V.BEZIRARD,L.BRIAND,J.C.PERNOLLET, JRNL AUTH 2 V.CAMPANACCI,M.TEGONI,C.CAMBILLAU JRNL TITL QUEEN BEE PHEROMONE BINDING PROTEIN PH-INDUCED DOMAIN JRNL TITL 2 SWAPPING FAVORS PHEROMONE RELEASE JRNL REF J.MOL.BIOL. V. 390 981 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19481550 JRNL DOI 10.1016/J.JMB.2009.05.067 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 35532 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1144 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2613 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.1650 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1792 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.07000 REMARK 3 B22 (A**2) : -0.76000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.443 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1977 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1329 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2695 ; 1.601 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3287 ; 1.555 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 5.046 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;31.224 ;26.923 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 352 ;12.722 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;12.880 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 311 ; 0.210 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2139 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 339 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 454 ; 0.258 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1336 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 990 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 924 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 191 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.205 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 44 ; 0.217 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.294 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1537 ; 1.434 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 468 ; 0.483 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1970 ; 1.819 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 886 ; 2.628 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 719 ; 3.479 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4003 ; 1.299 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 284 ; 6.080 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3265 ; 2.407 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3CZ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047384. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : TIROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36737 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 56.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.30100 REMARK 200 R SYM FOR SHELL (I) : 0.30100 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.2.0019 REMARK 200 STARTING MODEL: PDB ENTRY 3CYZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE, 0.1M TRIS, REMARK 280 15% PEG8000, PH6.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.70650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.05050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.82600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.05050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.70650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.82600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 ALA B 1 REMARK 465 PRO B 2 REMARK 465 ASP B 3 REMARK 465 TRP B 4 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 120 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 246 O REMARK 620 2 HOH A 248 O 87.5 REMARK 620 3 HOH A 267 O 86.6 90.2 REMARK 620 4 HOH B 329 O 94.1 90.8 178.9 REMARK 620 5 HOH B 330 O 90.4 175.7 86.0 93.2 REMARK 620 6 HOH B 331 O 173.7 87.9 89.2 90.1 94.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NBB A 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NBB B 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NBB B 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 125 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H8V RELATED DB: PDB REMARK 900 THE APO FORM OF THE SAME PROTEIN AT PH 5.5 REMARK 900 RELATED ID: 3CDN RELATED DB: PDB REMARK 900 THE APO FORM OF THE SAME PROTEIN SOAKED AT PH 4.0 REMARK 900 RELATED ID: 3BJH RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE N-BUTYL BENZENE SULFONAMIDE AT REMARK 900 PH 5.5 REMARK 900 RELATED ID: 3CAB RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE N-BUTYL BENZENE SULFONAMIDE REMARK 900 SOAKED AT PH 7.0 REMARK 900 RELATED ID: 3BFA RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE QUEEN MANDIBULAR PHEROMONE AT REMARK 900 PH 5.5 REMARK 900 RELATED ID: 3BFB RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE 9-KETO-2(E)-DECENOIC ACID AT REMARK 900 PH 5.5 REMARK 900 RELATED ID: 3BFH RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE HEXADECANOIC ACID AT PH 5.5 REMARK 900 RELATED ID: 3CYZ RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE 9-KETO-2(E)-DECENOIC ACID AT REMARK 900 PH 7.0 REMARK 900 RELATED ID: 3CZ0 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE QUEEN MANDIBULAR PHEROMONE AT REMARK 900 PH 7.0 REMARK 900 RELATED ID: 3CZ2 RELATED DB: PDB REMARK 900 THE APO FORM OF THE SAME PROTEIN AT PH 7.0 DBREF 3CZ1 A 1 119 UNP Q9U9J6 Q9U9J6_APIME 26 144 DBREF 3CZ1 B 1 119 UNP Q9U9J6 Q9U9J6_APIME 26 144 SEQRES 1 A 119 ALA PRO ASP TRP VAL PRO PRO GLU VAL PHE ASP LEU VAL SEQRES 2 A 119 ALA GLU ASP LYS ALA ARG CYS MET SER GLU HIS GLY THR SEQRES 3 A 119 THR GLN ALA GLN ILE ASP ASP VAL ASP LYS GLY ASN LEU SEQRES 4 A 119 VAL ASN GLU PRO SER ILE THR CYS TYR MET TYR CYS LEU SEQRES 5 A 119 LEU GLU ALA PHE SER LEU VAL ASP ASP GLU ALA ASN VAL SEQRES 6 A 119 ASP GLU ASP ILE MET LEU GLY LEU LEU PRO ASP GLN LEU SEQRES 7 A 119 GLN GLU ARG ALA GLN SER VAL MET GLY LYS CYS LEU PRO SEQRES 8 A 119 THR SER GLY SER ASP ASN CYS ASN LYS ILE TYR ASN LEU SEQRES 9 A 119 ALA LYS CYS VAL GLN GLU SER ALA PRO ASP VAL TRP PHE SEQRES 10 A 119 VAL ILE SEQRES 1 B 119 ALA PRO ASP TRP VAL PRO PRO GLU VAL PHE ASP LEU VAL SEQRES 2 B 119 ALA GLU ASP LYS ALA ARG CYS MET SER GLU HIS GLY THR SEQRES 3 B 119 THR GLN ALA GLN ILE ASP ASP VAL ASP LYS GLY ASN LEU SEQRES 4 B 119 VAL ASN GLU PRO SER ILE THR CYS TYR MET TYR CYS LEU SEQRES 5 B 119 LEU GLU ALA PHE SER LEU VAL ASP ASP GLU ALA ASN VAL SEQRES 6 B 119 ASP GLU ASP ILE MET LEU GLY LEU LEU PRO ASP GLN LEU SEQRES 7 B 119 GLN GLU ARG ALA GLN SER VAL MET GLY LYS CYS LEU PRO SEQRES 8 B 119 THR SER GLY SER ASP ASN CYS ASN LYS ILE TYR ASN LEU SEQRES 9 B 119 ALA LYS CYS VAL GLN GLU SER ALA PRO ASP VAL TRP PHE SEQRES 10 B 119 VAL ILE HET NBB A 122 14 HET GOL A 123 6 HET MG A 120 1 HET CL A 121 1 HET NBB B 122 14 HET NBB B 123 14 HET GOL B 124 6 HET GOL B 125 6 HET CL B 120 1 HET CL B 121 1 HETNAM NBB N-BUTYL-BENZENESULFONAMIDE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NBB 3(C10 H15 N O2 S) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 5 MG MG 2+ FORMUL 6 CL 3(CL 1-) FORMUL 13 HOH *280(H2 O) HELIX 1 1 LEU A 12 GLY A 25 1 14 HELIX 2 2 THR A 27 LYS A 36 1 10 HELIX 3 3 GLU A 42 ALA A 55 1 14 HELIX 4 4 ASP A 66 LEU A 74 1 9 HELIX 5 5 PRO A 75 GLN A 77 5 3 HELIX 6 6 LEU A 78 LEU A 90 1 13 HELIX 7 7 ASP A 96 ALA A 112 1 17 HELIX 8 8 LEU B 12 GLY B 25 1 14 HELIX 9 9 THR B 27 LYS B 36 1 10 HELIX 10 10 GLU B 42 PHE B 56 1 15 HELIX 11 11 ASP B 66 GLY B 72 1 7 HELIX 12 12 LEU B 73 LEU B 74 5 2 HELIX 13 13 PRO B 75 GLN B 77 5 3 HELIX 14 14 LEU B 78 LEU B 90 1 13 HELIX 15 15 ASP B 96 ALA B 112 1 17 SHEET 1 A 2 GLU A 8 ASP A 11 0 SHEET 2 A 2 VAL B 115 VAL B 118 1 O TRP B 116 N PHE A 10 SHEET 1 B 2 VAL A 115 VAL A 118 0 SHEET 2 B 2 GLU B 8 ASP B 11 1 O PHE B 10 N TRP A 116 SSBOND 1 CYS A 20 CYS A 51 1555 1555 2.03 SSBOND 2 CYS A 47 CYS A 98 1555 1555 2.11 SSBOND 3 CYS A 89 CYS A 107 1555 1555 2.06 SSBOND 4 CYS B 20 CYS B 51 1555 1555 2.16 SSBOND 5 CYS B 47 CYS B 98 1555 1555 2.04 SSBOND 6 CYS B 89 CYS B 107 1555 1555 2.06 LINK MG MG A 120 O HOH A 246 1555 1555 2.15 LINK MG MG A 120 O HOH A 248 1555 1555 2.09 LINK MG MG A 120 O HOH A 267 1555 1555 2.07 LINK MG MG A 120 O HOH B 329 1555 1555 2.05 LINK MG MG A 120 O HOH B 330 1555 1555 2.06 LINK MG MG A 120 O HOH B 331 1555 1555 2.06 CISPEP 1 LEU A 90 PRO A 91 0 -0.53 CISPEP 2 LEU B 90 PRO B 91 0 -1.22 SITE 1 AC1 6 HOH A 246 HOH A 248 HOH A 267 HOH B 329 SITE 2 AC1 6 HOH B 330 HOH B 331 SITE 1 AC2 3 PHE A 10 ASP A 11 GLU A 15 SITE 1 AC3 5 ASN B 64 VAL B 65 PRO B 91 THR B 92 SITE 2 AC3 5 HOH B 276 SITE 1 AC4 4 HIS A 24 HOH A 218 SER B 93 GLY B 94 SITE 1 AC5 6 MET A 49 LEU A 52 PHE A 117 VAL A 118 SITE 2 AC5 6 ILE A 119 HOH A 274 SITE 1 AC6 4 MET B 49 LEU B 52 LEU B 53 ILE B 119 SITE 1 AC7 9 MET B 70 LEU B 73 ARG B 81 ALA B 82 SITE 2 AC7 9 MET B 86 VAL B 108 ALA B 112 VAL B 115 SITE 3 AC7 9 PHE B 117 SITE 1 AC8 6 ARG A 19 SER A 22 HOH A 148 HOH A 187 SITE 2 AC8 6 HOH A 217 GLN B 77 SITE 1 AC9 5 ALA B 14 ALA B 18 MET B 21 GLN B 28 SITE 2 AC9 5 ILE B 31 SITE 1 BC1 5 HOH A 208 HIS B 24 PRO B 43 HOH B 320 SITE 2 BC1 5 HOH B 363 CRYST1 35.413 75.652 84.101 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028238 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013218 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011890 0.00000