HEADER REPLICATION 28-APR-08 3CZ7 TITLE MOLECULAR BASIS FOR THE AUTOREGULATION OF THE PROTEIN ACETYL TITLE 2 TRANSFERASE RTT109 COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATOR OF TY1 TRANSPOSITION PROTEIN 109; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: RTT109, KIM2, REM50; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS CHROMATIN STABILITY, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR A.HOELZ,P.STAVROPOULOS REVDAT 5 13-NOV-24 3CZ7 1 REMARK SEQADV LINK REVDAT 4 16-AUG-17 3CZ7 1 SOURCE REVDAT 3 13-JUL-11 3CZ7 1 VERSN REVDAT 2 24-FEB-09 3CZ7 1 VERSN REVDAT 1 09-SEP-08 3CZ7 0 JRNL AUTH P.STAVROPOULOS,V.NAGY,G.BLOBEL,A.HOELZ JRNL TITL MOLECULAR BASIS FOR THE AUTOREGULATION OF THE PROTEIN ACETYL JRNL TITL 2 TRANSFERASE RTT109 JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 12236 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18719104 JRNL DOI 10.1073/PNAS.0805813105 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29452 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1496 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2061 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1540 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.2060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2960 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.76000 REMARK 3 B22 (A**2) : -0.93000 REMARK 3 B33 (A**2) : -0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.71000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.850 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3083 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4181 ; 1.545 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 363 ; 6.205 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;34.368 ;23.813 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 539 ;14.987 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;21.731 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 456 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2301 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1424 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2121 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 265 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 67 ; 0.192 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.226 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1885 ; 1.192 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2972 ; 1.693 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1376 ; 2.540 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1209 ; 3.951 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 79 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2389 4.3877 13.5727 REMARK 3 T TENSOR REMARK 3 T11: 0.0118 T22: -0.0437 REMARK 3 T33: -0.0141 T12: 0.0042 REMARK 3 T13: 0.0036 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.3400 L22: 0.9743 REMARK 3 L33: 1.4927 L12: 0.1941 REMARK 3 L13: -0.1443 L23: 0.3665 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: 0.0108 S13: -0.1243 REMARK 3 S21: 0.0510 S22: 0.0271 S23: 0.0536 REMARK 3 S31: 0.1742 S32: -0.0645 S33: -0.0047 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 80 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4056 7.8728 10.6712 REMARK 3 T TENSOR REMARK 3 T11: -0.0067 T22: -0.0157 REMARK 3 T33: -0.0075 T12: 0.0024 REMARK 3 T13: -0.0055 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.5229 L22: 1.2682 REMARK 3 L33: 0.9704 L12: 0.1899 REMARK 3 L13: -0.1655 L23: -0.0622 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: -0.0477 S13: 0.0034 REMARK 3 S21: -0.0141 S22: 0.0504 S23: 0.0165 REMARK 3 S31: -0.0029 S32: -0.0200 S33: -0.0472 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 199 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5868 4.9100 -8.3176 REMARK 3 T TENSOR REMARK 3 T11: 0.0544 T22: 0.0454 REMARK 3 T33: -0.0012 T12: 0.0122 REMARK 3 T13: -0.0187 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 0.9524 L22: 1.4566 REMARK 3 L33: 1.5694 L12: -0.4496 REMARK 3 L13: -0.4413 L23: 0.6556 REMARK 3 S TENSOR REMARK 3 S11: 0.1141 S12: 0.2831 S13: -0.1357 REMARK 3 S21: -0.3433 S22: -0.1499 S23: 0.0933 REMARK 3 S31: -0.0628 S32: -0.2406 S33: 0.0358 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 285 A 365 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3580 13.1628 19.7168 REMARK 3 T TENSOR REMARK 3 T11: -0.0035 T22: -0.0449 REMARK 3 T33: -0.0070 T12: -0.0017 REMARK 3 T13: 0.0138 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.1284 L22: 0.7447 REMARK 3 L33: 1.6296 L12: 0.0842 REMARK 3 L13: -0.4138 L23: 0.4735 REMARK 3 S TENSOR REMARK 3 S11: 0.0593 S12: -0.1853 S13: 0.1610 REMARK 3 S21: 0.1644 S22: -0.0103 S23: 0.0544 REMARK 3 S31: -0.0774 S32: -0.0601 S33: -0.0490 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE FRIEDEL PAIRS WERE USED FOR PHASING. REMARK 4 REMARK 4 3CZ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000047390. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55305 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% (W/V) PEG 4,000, 1 MM ZNCL2, AND REMARK 280 100 MM SODIUM ACETATE, PH 4.4, TEMPERATURE 294K, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.39100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.44300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.39100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.44300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 194 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 194 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 LEU A 398 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 75 -162.77 -160.17 REMARK 500 TYR A 93 44.53 -104.24 REMARK 500 ASP A 287 19.56 59.64 REMARK 500 GLU A 317 -65.52 -26.41 REMARK 500 GLU A 320 -80.40 -82.40 REMARK 500 PHE A 321 -95.01 -48.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO A 404 DBREF 3CZ7 A 1 127 UNP Q07794 RT109_YEAST 1 127 DBREF 3CZ7 A 171 403 UNP Q07794 RT109_YEAST 171 403 SEQADV 3CZ7 GLY A 127A UNP Q07794 LINKER SEQADV 3CZ7 GLY A 127B UNP Q07794 LINKER SEQADV 3CZ7 SER A 127C UNP Q07794 LINKER SEQADV 3CZ7 GLY A 127D UNP Q07794 LINKER SEQRES 1 A 364 MSE SER LEU ASN ASP PHE LEU SER SER VAL LEU PRO VAL SEQRES 2 A 364 SER GLU GLN PHE GLU TYR LEU SER LEU GLN SER ILE PRO SEQRES 3 A 364 LEU GLU THR HIS ALA VAL VAL THR PRO ASN LYS ASP ASP SEQRES 4 A 364 LYS ARG VAL PRO LYS SER THR ILE LYS THR GLN HIS PHE SEQRES 5 A 364 PHE SER LEU PHE HIS GLN GLY LYS VAL PHE PHE SER LEU SEQRES 6 A 364 GLU VAL TYR VAL TYR VAL THR LEU TRP ASP GLU ALA ASP SEQRES 7 A 364 ALA GLU ARG LEU ILE PHE VAL SER LYS ALA ASP THR ASN SEQRES 8 A 364 GLY TYR CYS ASN THR ARG VAL SER VAL ARG ASP ILE THR SEQRES 9 A 364 LYS ILE ILE LEU GLU PHE ILE LEU SER ILE ASP PRO ASN SEQRES 10 A 364 TYR TYR LEU GLN LYS VAL LYS PRO ALA ILE GLY GLY SER SEQRES 11 A 364 GLY PHE GLN GLN ASP LEU TYR LEU SER PHE THR CYS PRO SEQRES 12 A 364 ARG GLU ILE LEU THR LYS ILE CYS LEU PHE THR ARG PRO SEQRES 13 A 364 ALA SER GLN TYR LEU PHE PRO ASP SER SER LYS ASN SER SEQRES 14 A 364 LYS LYS HIS ILE LEU ASN GLY GLU GLU LEU MSE LYS TRP SEQRES 15 A 364 TRP GLY PHE ILE LEU ASP ARG LEU LEU ILE GLU CYS PHE SEQRES 16 A 364 GLN ASN ASP THR GLN ALA LYS LEU ARG ILE PRO GLY GLU SEQRES 17 A 364 ASP PRO ALA ARG VAL ARG SER TYR LEU ARG GLY MSE LYS SEQRES 18 A 364 TYR PRO LEU TRP GLN VAL GLY ASP ILE PHE THR SER LYS SEQRES 19 A 364 GLU ASN SER LEU ALA VAL TYR ASN ILE PRO LEU PHE PRO SEQRES 20 A 364 ASP ASP PRO ALY ALA ARG PHE ILE HIS GLN LEU ALA GLU SEQRES 21 A 364 GLU ASP ARG LEU LEU LYS VAL SER LEU SER SER PHE TRP SEQRES 22 A 364 ILE GLU LEU GLN GLU ARG GLN GLU PHE LYS LEU SER VAL SEQRES 23 A 364 THR SER SER VAL MSE GLY ILE SER GLY TYR SER LEU ALA SEQRES 24 A 364 THR PRO SER LEU PHE PRO SER SER ALA ASP VAL ILE VAL SEQRES 25 A 364 PRO LYS SER ARG LYS GLN PHE ARG ALA ILE LYS LYS TYR SEQRES 26 A 364 ILE THR GLY GLU GLU TYR ASP THR GLU GLU GLY ALA ILE SEQRES 27 A 364 GLU ALA PHE THR ASN ILE ARG ASP PHE LEU LEU LEU ARG SEQRES 28 A 364 MSE ALA THR ASN LEU GLN SER LEU THR GLY LYS ARG GLU MODRES 3CZ7 MSE A 1 MET SELENOMETHIONINE MODRES 3CZ7 MSE A 219 MET SELENOMETHIONINE MODRES 3CZ7 MSE A 259 MET SELENOMETHIONINE MODRES 3CZ7 ALY A 290 LYS N(6)-ACETYLLYSINE MODRES 3CZ7 MSE A 330 MET SELENOMETHIONINE MODRES 3CZ7 MSE A 391 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 219 8 HET MSE A 259 8 HET ALY A 290 12 HET MSE A 330 8 HET MSE A 391 8 HET ACO A 404 51 HETNAM MSE SELENOMETHIONINE HETNAM ALY N(6)-ACETYLLYSINE HETNAM ACO ACETYL COENZYME *A FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 1 ALY C8 H16 N2 O3 FORMUL 2 ACO C23 H38 N7 O17 P3 S FORMUL 3 HOH *276(H2 O) HELIX 1 1 SER A 2 LEU A 11 1 10 HELIX 2 2 SER A 99 SER A 113 1 15 HELIX 3 3 PRO A 116 GLN A 121 1 6 HELIX 4 4 ASP A 203 ASN A 207 5 5 HELIX 5 5 ASN A 214 PHE A 234 1 21 HELIX 6 6 ASP A 248 ARG A 257 1 10 HELIX 7 7 SER A 272 LEU A 277 1 6 HELIX 8 8 ALA A 278 ASN A 281 5 4 HELIX 9 9 ASP A 288 GLU A 300 1 13 HELIX 10 10 SER A 307 ARG A 318 1 12 HELIX 11 11 SER A 354 GLY A 367 1 14 HELIX 12 12 THR A 372 ALA A 392 1 21 SHEET 1 A 8 LEU A 27 THR A 29 0 SHEET 2 A 8 SER A 45 HIS A 57 -1 O THR A 46 N THR A 29 SHEET 3 A 8 LYS A 60 ASP A 75 -1 O VAL A 67 N HIS A 51 SHEET 4 A 8 ASP A 78 THR A 90 -1 O ASP A 78 N TRP A 74 SHEET 5 A 8 LEU A 186 THR A 193 1 O LYS A 188 N ILE A 83 SHEET 6 A 8 SER A 328 GLY A 334 -1 O GLY A 334 N THR A 187 SHEET 7 A 8 GLN A 239 ARG A 243 -1 N LYS A 241 O GLY A 331 SHEET 8 A 8 TRP A 264 VAL A 266 1 O GLN A 265 N ALA A 240 SHEET 1 B 4 LEU A 27 THR A 29 0 SHEET 2 B 4 SER A 45 HIS A 57 -1 O THR A 46 N THR A 29 SHEET 3 B 4 GLN A 16 GLN A 23 -1 N LEU A 22 O PHE A 52 SHEET 4 B 4 GLN A 396 THR A 399 -1 O LEU A 398 N PHE A 17 LINK C MSE A 1 N SER A 2 1555 1555 1.34 LINK C LEU A 218 N MSE A 219 1555 1555 1.33 LINK C MSE A 219 N LYS A 220 1555 1555 1.32 LINK C GLY A 258 N MSE A 259 1555 1555 1.33 LINK C MSE A 259 N LYS A 260 1555 1555 1.33 LINK C PRO A 289 N ALY A 290 1555 1555 1.33 LINK C ALY A 290 N ALA A 291 1555 1555 1.33 LINK C VAL A 329 N MSE A 330 1555 1555 1.33 LINK C MSE A 330 N GLY A 331 1555 1555 1.33 LINK C ARG A 390 N MSE A 391 1555 1555 1.33 LINK C MSE A 391 N ALA A 392 1555 1555 1.33 CISPEP 1 GLY A 127B SER A 127C 0 18.22 SITE 1 AC1 25 LYS A 87 ALA A 88 ASP A 89 THR A 90 SITE 2 AC1 25 VAL A 98 SER A 99 VAL A 100 ARG A 101 SITE 3 AC1 25 PHE A 192 ARG A 194 PRO A 195 ALA A 196 SITE 4 AC1 25 TYR A 199 LYS A 210 HIS A 211 ILE A 212 SITE 5 AC1 25 LEU A 213 LEU A 218 TRP A 221 TRP A 222 SITE 6 AC1 25 HOH A 413 HOH A 549 HOH A 560 HOH A 569 SITE 7 AC1 25 HOH A 587 CRYST1 120.782 68.886 55.241 90.00 106.65 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008279 0.000000 0.002476 0.00000 SCALE2 0.000000 0.014517 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018895 0.00000 HETATM 1 N MSE A 1 29.961 -1.116 24.948 1.00 33.66 N HETATM 2 CA MSE A 1 30.279 0.313 24.661 1.00 31.78 C HETATM 3 C MSE A 1 28.944 1.061 24.399 1.00 29.32 C HETATM 4 O MSE A 1 28.344 0.941 23.314 1.00 29.65 O HETATM 5 CB MSE A 1 31.255 0.392 23.485 1.00 34.30 C HETATM 6 CG MSE A 1 31.739 1.795 23.125 1.00 39.46 C HETATM 7 SE MSE A 1 33.492 2.364 23.878 1.00 57.31 SE HETATM 8 CE MSE A 1 33.687 3.967 22.889 1.00 41.38 C