data_3D00 # _entry.id 3D00 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3D00 pdb_00003d00 10.2210/pdb3d00/pdb RCSB RCSB047419 ? ? WWPDB D_1000047419 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 383639 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3D00 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-04-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Structures of three members of Pfam PF02663 (FmdE) implicated in microbial methanogenesis reveal a conserved alpha+beta core domain and an auxiliary C-terminal treble-clef zinc finger. ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 66 _citation.page_first 1335 _citation.page_last 1346 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20944230 _citation.pdbx_database_id_DOI 10.1107/S1744309110020166 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Axelrod, H.L.' 1 ? primary 'Das, D.' 2 ? primary 'Abdubek, P.' 3 ? primary 'Astakhova, T.' 4 ? primary 'Bakolitsa, C.' 5 ? primary 'Carlton, D.' 6 ? primary 'Chen, C.' 7 ? primary 'Chiu, H.J.' 8 ? primary 'Clayton, T.' 9 ? primary 'Deller, M.C.' 10 ? primary 'Duan, L.' 11 ? primary 'Ellrott, K.' 12 ? primary 'Farr, C.L.' 13 ? primary 'Feuerhelm, J.' 14 ? primary 'Grant, J.C.' 15 ? primary 'Grzechnik, A.' 16 ? primary 'Han, G.W.' 17 ? primary 'Jaroszewski, L.' 18 ? primary 'Jin, K.K.' 19 ? primary 'Klock, H.E.' 20 ? primary 'Knuth, M.W.' 21 ? primary 'Kozbial, P.' 22 ? primary 'Krishna, S.S.' 23 ? primary 'Kumar, A.' 24 ? primary 'Lam, W.W.' 25 ? primary 'Marciano, D.' 26 ? primary 'McMullan, D.' 27 ? primary 'Miller, M.D.' 28 ? primary 'Morse, A.T.' 29 ? primary 'Nigoghossian, E.' 30 ? primary 'Nopakun, A.' 31 ? primary 'Okach, L.' 32 ? primary 'Puckett, C.' 33 ? primary 'Reyes, R.' 34 ? primary 'Sefcovic, N.' 35 ? primary 'Tien, H.J.' 36 ? primary 'Trame, C.B.' 37 ? primary 'van den Bedem, H.' 38 ? primary 'Weekes, D.' 39 ? primary 'Wooten, T.' 40 ? primary 'Xu, Q.' 41 ? primary 'Hodgson, K.O.' 42 ? primary 'Wooley, J.' 43 ? primary 'Elsliger, M.A.' 44 ? primary 'Deacon, A.M.' 45 ? primary 'Godzik, A.' 46 ? primary 'Lesley, S.A.' 47 ? primary 'Wilson, I.A.' 48 ? # _cell.entry_id 3D00 _cell.length_a 54.356 _cell.length_b 54.356 _cell.length_c 136.719 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3D00 _symmetry.Int_Tables_number 92 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tungsten formylmethanofuran dehydrogenase subunit E' 21697.605 1 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 42 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)TARNILSYSYEEYVEKITAFHGYPAPGVLIGGF(MSE)VDLAVKNLPEGILYDAICETRTCLPDAVQLLTPCTF GNGWLTVLP(MSE)GLFAVSLYDKFTGEGVRVFLDVEK(MSE)GPWQEIRNWFLKLKTKKEQDSERLFKEIREAGPDILE LRNVKLKPGFLEKKHKGKIVLCPQCREAYPAQDGELCLSCQGGSPYL ; _entity_poly.pdbx_seq_one_letter_code_can ;GMTARNILSYSYEEYVEKITAFHGYPAPGVLIGGFMVDLAVKNLPEGILYDAICETRTCLPDAVQLLTPCTFGNGWLTVL PMGLFAVSLYDKFTGEGVRVFLDVEKMGPWQEIRNWFLKLKTKKEQDSERLFKEIREAGPDILELRNVKLKPGFLEKKHK GKIVLCPQCREAYPAQDGELCLSCQGGSPYL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 383639 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 THR n 1 4 ALA n 1 5 ARG n 1 6 ASN n 1 7 ILE n 1 8 LEU n 1 9 SER n 1 10 TYR n 1 11 SER n 1 12 TYR n 1 13 GLU n 1 14 GLU n 1 15 TYR n 1 16 VAL n 1 17 GLU n 1 18 LYS n 1 19 ILE n 1 20 THR n 1 21 ALA n 1 22 PHE n 1 23 HIS n 1 24 GLY n 1 25 TYR n 1 26 PRO n 1 27 ALA n 1 28 PRO n 1 29 GLY n 1 30 VAL n 1 31 LEU n 1 32 ILE n 1 33 GLY n 1 34 GLY n 1 35 PHE n 1 36 MSE n 1 37 VAL n 1 38 ASP n 1 39 LEU n 1 40 ALA n 1 41 VAL n 1 42 LYS n 1 43 ASN n 1 44 LEU n 1 45 PRO n 1 46 GLU n 1 47 GLY n 1 48 ILE n 1 49 LEU n 1 50 TYR n 1 51 ASP n 1 52 ALA n 1 53 ILE n 1 54 CYS n 1 55 GLU n 1 56 THR n 1 57 ARG n 1 58 THR n 1 59 CYS n 1 60 LEU n 1 61 PRO n 1 62 ASP n 1 63 ALA n 1 64 VAL n 1 65 GLN n 1 66 LEU n 1 67 LEU n 1 68 THR n 1 69 PRO n 1 70 CYS n 1 71 THR n 1 72 PHE n 1 73 GLY n 1 74 ASN n 1 75 GLY n 1 76 TRP n 1 77 LEU n 1 78 THR n 1 79 VAL n 1 80 LEU n 1 81 PRO n 1 82 MSE n 1 83 GLY n 1 84 LEU n 1 85 PHE n 1 86 ALA n 1 87 VAL n 1 88 SER n 1 89 LEU n 1 90 TYR n 1 91 ASP n 1 92 LYS n 1 93 PHE n 1 94 THR n 1 95 GLY n 1 96 GLU n 1 97 GLY n 1 98 VAL n 1 99 ARG n 1 100 VAL n 1 101 PHE n 1 102 LEU n 1 103 ASP n 1 104 VAL n 1 105 GLU n 1 106 LYS n 1 107 MSE n 1 108 GLY n 1 109 PRO n 1 110 TRP n 1 111 GLN n 1 112 GLU n 1 113 ILE n 1 114 ARG n 1 115 ASN n 1 116 TRP n 1 117 PHE n 1 118 LEU n 1 119 LYS n 1 120 LEU n 1 121 LYS n 1 122 THR n 1 123 LYS n 1 124 LYS n 1 125 GLU n 1 126 GLN n 1 127 ASP n 1 128 SER n 1 129 GLU n 1 130 ARG n 1 131 LEU n 1 132 PHE n 1 133 LYS n 1 134 GLU n 1 135 ILE n 1 136 ARG n 1 137 GLU n 1 138 ALA n 1 139 GLY n 1 140 PRO n 1 141 ASP n 1 142 ILE n 1 143 LEU n 1 144 GLU n 1 145 LEU n 1 146 ARG n 1 147 ASN n 1 148 VAL n 1 149 LYS n 1 150 LEU n 1 151 LYS n 1 152 PRO n 1 153 GLY n 1 154 PHE n 1 155 LEU n 1 156 GLU n 1 157 LYS n 1 158 LYS n 1 159 HIS n 1 160 LYS n 1 161 GLY n 1 162 LYS n 1 163 ILE n 1 164 VAL n 1 165 LEU n 1 166 CYS n 1 167 PRO n 1 168 GLN n 1 169 CYS n 1 170 ARG n 1 171 GLU n 1 172 ALA n 1 173 TYR n 1 174 PRO n 1 175 ALA n 1 176 GLN n 1 177 ASP n 1 178 GLY n 1 179 GLU n 1 180 LEU n 1 181 CYS n 1 182 LEU n 1 183 SER n 1 184 CYS n 1 185 GLN n 1 186 GLY n 1 187 GLY n 1 188 SER n 1 189 PRO n 1 190 TYR n 1 191 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'YP_460196.1, SYNAS_01490, SYN_00638' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain SB _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Syntrophus aciditrophicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 56780 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2LQ23_SYNAS _struct_ref.pdbx_db_accession Q2LQ23 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTARNILSYSYEEYVEKITAFHGYPAPGVLIGGFMVDLAVKNLPEGILYDAICETRTCLPDAVQLLTPCTFGNGWLTVLP MGLFAVSLYDKFTGEGVRVFLDVEKMGPWQEIRNWFLKLKTKKEQDSERLFKEIREAGPDILELRNVKLKPGFLEKKHKG KIVLCPQCREAYPAQDGELCLSCQGGSPYL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3D00 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 191 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2LQ23 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 190 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 190 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3D00 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q2LQ23 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3D00 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.01M NiCl2, 20.0% PEG MME 2000, 0.1M Tris-HCl pH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2008-04-03 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97817 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91837,0.97817 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3D00 _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 29.386 _reflns.number_obs 16955 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_netI_over_sigmaI 6.800 _reflns.pdbx_Rsym_value 0.078 _reflns.pdbx_redundancy 7.000 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 30.675 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.90 1.95 ? 8626 ? 0.011 0.7 1.134 ? 7.10 ? 1208 99.90 1 1 1.95 2.00 ? 8582 ? 0.011 0.9 0.855 ? 7.20 ? 1192 99.90 2 1 2.00 2.06 ? 8253 ? 0.011 1.2 0.659 ? 7.10 ? 1157 100.00 3 1 2.06 2.12 ? 8020 ? 0.011 1.6 0.484 ? 7.10 ? 1122 100.00 4 1 2.12 2.19 ? 7887 ? 0.011 1.9 0.410 ? 7.20 ? 1102 100.00 5 1 2.19 2.27 ? 7549 ? 0.011 2.3 0.340 ? 7.10 ? 1068 100.00 6 1 2.27 2.36 ? 7325 ? 0.011 2.8 0.281 ? 7.20 ? 1018 100.00 7 1 2.36 2.45 ? 7032 ? 0.011 3.3 0.235 ? 7.10 ? 989 100.00 8 1 2.45 2.56 ? 6743 ? 0.011 4.2 0.185 ? 7.10 ? 953 100.00 9 1 2.56 2.69 ? 6522 ? 0.011 5.1 0.148 ? 7.10 ? 920 100.00 10 1 2.69 2.83 ? 6142 ? 0.011 6.1 0.122 ? 7.00 ? 872 100.00 11 1 2.83 3.00 ? 5834 ? 0.011 7.3 0.097 ? 7.00 ? 837 100.00 12 1 3.00 3.21 ? 5569 ? 0.011 8.6 0.079 ? 7.00 ? 796 100.00 13 1 3.21 3.47 ? 5024 ? 0.011 10.5 0.062 ? 7.00 ? 718 100.00 14 1 3.47 3.80 ? 4748 ? 0.011 13.2 0.049 ? 6.90 ? 693 100.00 15 1 3.80 4.25 ? 4272 ? 0.011 13.6 0.044 ? 6.80 ? 631 100.00 16 1 4.25 4.91 ? 3748 ? 0.011 14.8 0.041 ? 6.70 ? 561 100.00 17 1 4.91 6.01 ? 3173 ? 0.011 16.0 0.041 ? 6.50 ? 485 100.00 18 1 6.01 8.50 ? 2353 ? 0.011 14.3 0.041 ? 6.00 ? 394 100.00 19 1 8.50 29.386 ? 1244 ? 0.011 16.4 0.035 ? 5.20 ? 239 95.90 20 1 # _refine.entry_id 3D00 _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 29.386 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.900 _refine.ls_number_reflns_obs 16902 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. ZINC WAS MODELED BASED ON X-RAY FLUORESCENCE SCAN AND ANOMALOUS DIFFERENCE FOURIER MAP CALCULATIONS. 5. CHLORIDE WAS MODELED BASED ON CRYSTALLIZATION CONDITIONS. ; _refine.ls_R_factor_obs 0.235 _refine.ls_R_factor_R_work 0.233 _refine.ls_R_factor_R_free 0.268 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 855 _refine.B_iso_mean 35.200 _refine.aniso_B[1][1] 1.730 _refine.aniso_B[2][2] 1.730 _refine.aniso_B[3][3] -3.460 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.946 _refine.correlation_coeff_Fo_to_Fc_free 0.938 _refine.pdbx_overall_ESU_R 0.170 _refine.pdbx_overall_ESU_R_Free 0.156 _refine.overall_SU_ML 0.156 _refine.overall_SU_B 11.433 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1388 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 1432 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 29.386 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1445 0.019 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 961 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1972 1.604 1.987 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2356 1.031 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 189 6.400 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 53 34.474 23.774 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 225 14.661 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 6 21.608 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 224 0.088 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1615 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 292 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 285 0.200 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 900 0.196 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 710 0.182 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 747 0.087 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 37 0.175 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 15 0.114 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 37 0.226 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 15 0.178 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 954 1.214 2.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 376 0.264 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1489 1.913 3.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 576 1.086 2.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 480 1.576 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.750 _refine_ls_shell.number_reflns_R_work 1136 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.347 _refine_ls_shell.R_factor_R_free 0.351 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 64 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1200 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3D00 _struct.title ;Crystal structure of a tungsten formylmethanofuran dehydrogenase subunit e (fmde)-like protein (syn_00638) from syntrophus aciditrophicus at 1.90 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Fwde/gapdh domain-like fold, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, metal binding protein ; _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.entry_id 3D00 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ;AUTHORS STATE THAT THE PROTOMER MAY FORM A DIMER BASED ON CRYSTAL PACKING ANALYSIS. ANALYTICAL SIZE-EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIC FORM IN SOLUTION. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 11 ? GLY A 24 ? SER A 10 GLY A 23 1 ? 14 HELX_P HELX_P2 2 ALA A 27 ? ASN A 43 ? ALA A 26 ASN A 42 1 ? 17 HELX_P HELX_P3 3 CYS A 59 ? THR A 68 ? CYS A 58 THR A 67 1 ? 10 HELX_P HELX_P4 4 VAL A 104 ? MSE A 107 ? VAL A 103 MSE A 106 5 ? 4 HELX_P HELX_P5 5 TRP A 110 ? LEU A 118 ? TRP A 109 LEU A 117 1 ? 9 HELX_P HELX_P6 6 SER A 128 ? GLY A 139 ? SER A 127 GLY A 138 1 ? 12 HELX_P HELX_P7 7 LYS A 151 ? GLU A 156 ? LYS A 150 GLU A 155 5 ? 6 HELX_P HELX_P8 8 GLN A 176 ? GLY A 178 ? GLN A 175 GLY A 177 5 ? 3 HELX_P HELX_P9 9 CYS A 181 ? GLY A 186 ? CYS A 180 GLY A 185 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 2 C A ? ? 1_555 A THR 3 N ? ? A MSE 1 A THR 2 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale2 covale both ? A MSE 2 C B ? ? 1_555 A THR 3 N ? ? A MSE 1 A THR 2 1_555 ? ? ? ? ? ? ? 1.395 ? ? covale3 covale both ? A PHE 35 C ? ? ? 1_555 A MSE 36 N ? ? A PHE 34 A MSE 35 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale4 covale both ? A MSE 36 C ? ? ? 1_555 A VAL 37 N ? ? A MSE 35 A VAL 36 1_555 ? ? ? ? ? ? ? 1.310 ? ? covale5 covale both ? A PRO 81 C ? ? ? 1_555 A MSE 82 N ? ? A PRO 80 A MSE 81 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? A MSE 82 C ? ? ? 1_555 A GLY 83 N ? ? A MSE 81 A GLY 82 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale7 covale both ? A LYS 106 C ? ? ? 1_555 A MSE 107 N ? ? A LYS 105 A MSE 106 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale8 covale both ? A MSE 107 C ? ? ? 1_555 A GLY 108 N ? ? A MSE 106 A GLY 107 1_555 ? ? ? ? ? ? ? 1.329 ? ? metalc1 metalc ? ? A CYS 166 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 165 A ZN 200 1_555 ? ? ? ? ? ? ? 2.379 ? ? metalc2 metalc ? ? A CYS 169 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 168 A ZN 200 1_555 ? ? ? ? ? ? ? 2.473 ? ? metalc3 metalc ? ? A CYS 181 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 180 A ZN 200 1_555 ? ? ? ? ? ? ? 2.392 ? ? metalc4 metalc ? ? A CYS 184 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 183 A ZN 200 1_555 ? ? ? ? ? ? ? 2.485 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 77 ? VAL A 79 ? LEU A 76 VAL A 78 A 2 TYR A 50 ? CYS A 54 ? TYR A 49 CYS A 53 A 3 ALA A 86 ? ASP A 91 ? ALA A 85 ASP A 90 A 4 GLU A 96 ? LEU A 102 ? GLU A 95 LEU A 101 A 5 LEU A 143 ? LYS A 149 ? LEU A 142 LYS A 148 B 1 ILE A 163 ? LEU A 165 ? ILE A 162 LEU A 164 B 2 ALA A 172 ? PRO A 174 ? ALA A 171 PRO A 173 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 78 ? O THR A 77 N CYS A 54 ? N CYS A 53 A 2 3 N ILE A 53 ? N ILE A 52 O SER A 88 ? O SER A 87 A 3 4 N ASP A 91 ? N ASP A 90 O GLU A 96 ? O GLU A 95 A 4 5 N GLY A 97 ? N GLY A 96 O VAL A 148 ? O VAL A 147 B 1 2 N VAL A 164 ? N VAL A 163 O TYR A 173 ? O TYR A 172 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 200 ? 4 'BINDING SITE FOR RESIDUE ZN A 200' AC2 Software A CL 201 ? 4 'BINDING SITE FOR RESIDUE CL A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 166 ? CYS A 165 . ? 1_555 ? 2 AC1 4 CYS A 169 ? CYS A 168 . ? 1_555 ? 3 AC1 4 CYS A 181 ? CYS A 180 . ? 1_555 ? 4 AC1 4 CYS A 184 ? CYS A 183 . ? 1_555 ? 5 AC2 4 THR A 56 ? THR A 55 . ? 1_555 ? 6 AC2 4 ARG A 57 ? ARG A 56 . ? 1_555 ? 7 AC2 4 PRO A 81 ? PRO A 80 . ? 1_555 ? 8 AC2 4 GLY A 83 ? GLY A 82 . ? 1_555 ? # _atom_sites.entry_id 3D00 _atom_sites.fract_transf_matrix[1][1] 0.018397 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018397 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007314 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 THR 3 2 2 THR THR A . n A 1 4 ALA 4 3 3 ALA ALA A . n A 1 5 ARG 5 4 4 ARG ARG A . n A 1 6 ASN 6 5 5 ASN ASN A . n A 1 7 ILE 7 6 6 ILE ILE A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 SER 9 8 8 SER SER A . n A 1 10 TYR 10 9 9 TYR TYR A . n A 1 11 SER 11 10 10 SER SER A . n A 1 12 TYR 12 11 11 TYR TYR A . n A 1 13 GLU 13 12 12 GLU GLU A . n A 1 14 GLU 14 13 13 GLU GLU A . n A 1 15 TYR 15 14 14 TYR TYR A . n A 1 16 VAL 16 15 15 VAL VAL A . n A 1 17 GLU 17 16 16 GLU GLU A . n A 1 18 LYS 18 17 17 LYS LYS A . n A 1 19 ILE 19 18 18 ILE ILE A . n A 1 20 THR 20 19 19 THR THR A . n A 1 21 ALA 21 20 20 ALA ALA A . n A 1 22 PHE 22 21 21 PHE PHE A . n A 1 23 HIS 23 22 22 HIS HIS A . n A 1 24 GLY 24 23 23 GLY GLY A . n A 1 25 TYR 25 24 24 TYR TYR A . n A 1 26 PRO 26 25 25 PRO PRO A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 PRO 28 27 27 PRO PRO A . n A 1 29 GLY 29 28 28 GLY GLY A . n A 1 30 VAL 30 29 29 VAL VAL A . n A 1 31 LEU 31 30 30 LEU LEU A . n A 1 32 ILE 32 31 31 ILE ILE A . n A 1 33 GLY 33 32 32 GLY GLY A . n A 1 34 GLY 34 33 33 GLY GLY A . n A 1 35 PHE 35 34 34 PHE PHE A . n A 1 36 MSE 36 35 35 MSE MSE A . n A 1 37 VAL 37 36 36 VAL VAL A . n A 1 38 ASP 38 37 37 ASP ASP A . n A 1 39 LEU 39 38 38 LEU LEU A . n A 1 40 ALA 40 39 39 ALA ALA A . n A 1 41 VAL 41 40 40 VAL VAL A . n A 1 42 LYS 42 41 41 LYS LYS A . n A 1 43 ASN 43 42 42 ASN ASN A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 PRO 45 44 44 PRO PRO A . n A 1 46 GLU 46 45 45 GLU GLU A . n A 1 47 GLY 47 46 46 GLY GLY A . n A 1 48 ILE 48 47 47 ILE ILE A . n A 1 49 LEU 49 48 48 LEU LEU A . n A 1 50 TYR 50 49 49 TYR TYR A . n A 1 51 ASP 51 50 50 ASP ASP A . n A 1 52 ALA 52 51 51 ALA ALA A . n A 1 53 ILE 53 52 52 ILE ILE A . n A 1 54 CYS 54 53 53 CYS CYS A . n A 1 55 GLU 55 54 54 GLU GLU A . n A 1 56 THR 56 55 55 THR THR A . n A 1 57 ARG 57 56 56 ARG ARG A . n A 1 58 THR 58 57 57 THR THR A . n A 1 59 CYS 59 58 58 CYS CYS A . n A 1 60 LEU 60 59 59 LEU LEU A . n A 1 61 PRO 61 60 60 PRO PRO A . n A 1 62 ASP 62 61 61 ASP ASP A . n A 1 63 ALA 63 62 62 ALA ALA A . n A 1 64 VAL 64 63 63 VAL VAL A . n A 1 65 GLN 65 64 64 GLN GLN A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 LEU 67 66 66 LEU LEU A . n A 1 68 THR 68 67 67 THR THR A . n A 1 69 PRO 69 68 68 PRO PRO A . n A 1 70 CYS 70 69 69 CYS CYS A . n A 1 71 THR 71 70 70 THR THR A . n A 1 72 PHE 72 71 71 PHE PHE A . n A 1 73 GLY 73 72 72 GLY GLY A . n A 1 74 ASN 74 73 73 ASN ASN A . n A 1 75 GLY 75 74 74 GLY GLY A . n A 1 76 TRP 76 75 75 TRP TRP A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 THR 78 77 77 THR THR A . n A 1 79 VAL 79 78 78 VAL VAL A . n A 1 80 LEU 80 79 79 LEU LEU A . n A 1 81 PRO 81 80 80 PRO PRO A . n A 1 82 MSE 82 81 81 MSE MSE A . n A 1 83 GLY 83 82 82 GLY GLY A . n A 1 84 LEU 84 83 83 LEU LEU A . n A 1 85 PHE 85 84 84 PHE PHE A . n A 1 86 ALA 86 85 85 ALA ALA A . n A 1 87 VAL 87 86 86 VAL VAL A . n A 1 88 SER 88 87 87 SER SER A . n A 1 89 LEU 89 88 88 LEU LEU A . n A 1 90 TYR 90 89 89 TYR TYR A . n A 1 91 ASP 91 90 90 ASP ASP A . n A 1 92 LYS 92 91 91 LYS LYS A . n A 1 93 PHE 93 92 92 PHE PHE A . n A 1 94 THR 94 93 93 THR THR A . n A 1 95 GLY 95 94 94 GLY GLY A . n A 1 96 GLU 96 95 95 GLU GLU A . n A 1 97 GLY 97 96 96 GLY GLY A . n A 1 98 VAL 98 97 97 VAL VAL A . n A 1 99 ARG 99 98 98 ARG ARG A . n A 1 100 VAL 100 99 99 VAL VAL A . n A 1 101 PHE 101 100 100 PHE PHE A . n A 1 102 LEU 102 101 101 LEU LEU A . n A 1 103 ASP 103 102 102 ASP ASP A . n A 1 104 VAL 104 103 103 VAL VAL A . n A 1 105 GLU 105 104 104 GLU GLU A . n A 1 106 LYS 106 105 105 LYS LYS A . n A 1 107 MSE 107 106 106 MSE MSE A . n A 1 108 GLY 108 107 107 GLY GLY A . n A 1 109 PRO 109 108 108 PRO PRO A . n A 1 110 TRP 110 109 109 TRP TRP A . n A 1 111 GLN 111 110 110 GLN GLN A . n A 1 112 GLU 112 111 111 GLU GLU A . n A 1 113 ILE 113 112 112 ILE ILE A . n A 1 114 ARG 114 113 113 ARG ARG A . n A 1 115 ASN 115 114 114 ASN ASN A . n A 1 116 TRP 116 115 115 TRP TRP A . n A 1 117 PHE 117 116 116 PHE PHE A . n A 1 118 LEU 118 117 117 LEU LEU A . n A 1 119 LYS 119 118 118 LYS LYS A . n A 1 120 LEU 120 119 119 LEU LEU A . n A 1 121 LYS 121 120 120 LYS LYS A . n A 1 122 THR 122 121 ? ? ? A . n A 1 123 LYS 123 122 ? ? ? A . n A 1 124 LYS 124 123 ? ? ? A . n A 1 125 GLU 125 124 ? ? ? A . n A 1 126 GLN 126 125 ? ? ? A . n A 1 127 ASP 127 126 ? ? ? A . n A 1 128 SER 128 127 127 SER SER A . n A 1 129 GLU 129 128 128 GLU GLU A . n A 1 130 ARG 130 129 129 ARG ARG A . n A 1 131 LEU 131 130 130 LEU LEU A . n A 1 132 PHE 132 131 131 PHE PHE A . n A 1 133 LYS 133 132 132 LYS LYS A . n A 1 134 GLU 134 133 133 GLU GLU A . n A 1 135 ILE 135 134 134 ILE ILE A . n A 1 136 ARG 136 135 135 ARG ARG A . n A 1 137 GLU 137 136 136 GLU GLU A . n A 1 138 ALA 138 137 137 ALA ALA A . n A 1 139 GLY 139 138 138 GLY GLY A . n A 1 140 PRO 140 139 139 PRO PRO A . n A 1 141 ASP 141 140 140 ASP ASP A . n A 1 142 ILE 142 141 141 ILE ILE A . n A 1 143 LEU 143 142 142 LEU LEU A . n A 1 144 GLU 144 143 143 GLU GLU A . n A 1 145 LEU 145 144 144 LEU LEU A . n A 1 146 ARG 146 145 145 ARG ARG A . n A 1 147 ASN 147 146 146 ASN ASN A . n A 1 148 VAL 148 147 147 VAL VAL A . n A 1 149 LYS 149 148 148 LYS LYS A . n A 1 150 LEU 150 149 149 LEU LEU A . n A 1 151 LYS 151 150 150 LYS LYS A . n A 1 152 PRO 152 151 151 PRO PRO A . n A 1 153 GLY 153 152 152 GLY GLY A . n A 1 154 PHE 154 153 153 PHE PHE A . n A 1 155 LEU 155 154 154 LEU LEU A . n A 1 156 GLU 156 155 155 GLU GLU A . n A 1 157 LYS 157 156 156 LYS LYS A . n A 1 158 LYS 158 157 157 LYS LYS A . n A 1 159 HIS 159 158 158 HIS HIS A . n A 1 160 LYS 160 159 159 LYS LYS A . n A 1 161 GLY 161 160 160 GLY GLY A . n A 1 162 LYS 162 161 161 LYS LYS A . n A 1 163 ILE 163 162 162 ILE ILE A . n A 1 164 VAL 164 163 163 VAL VAL A . n A 1 165 LEU 165 164 164 LEU LEU A . n A 1 166 CYS 166 165 165 CYS CYS A . n A 1 167 PRO 167 166 166 PRO PRO A . n A 1 168 GLN 168 167 167 GLN GLN A . n A 1 169 CYS 169 168 168 CYS CYS A . n A 1 170 ARG 170 169 169 ARG ARG A . n A 1 171 GLU 171 170 170 GLU GLU A . n A 1 172 ALA 172 171 171 ALA ALA A . n A 1 173 TYR 173 172 172 TYR TYR A . n A 1 174 PRO 174 173 173 PRO PRO A . n A 1 175 ALA 175 174 174 ALA ALA A . n A 1 176 GLN 176 175 175 GLN GLN A . n A 1 177 ASP 177 176 176 ASP ASP A . n A 1 178 GLY 178 177 177 GLY GLY A . n A 1 179 GLU 179 178 178 GLU GLU A . n A 1 180 LEU 180 179 179 LEU LEU A . n A 1 181 CYS 181 180 180 CYS CYS A . n A 1 182 LEU 182 181 181 LEU LEU A . n A 1 183 SER 183 182 182 SER SER A . n A 1 184 CYS 184 183 183 CYS CYS A . n A 1 185 GLN 185 184 184 GLN GLN A . n A 1 186 GLY 186 185 185 GLY GLY A . n A 1 187 GLY 187 186 186 GLY GLY A . n A 1 188 SER 188 187 187 SER SER A . n A 1 189 PRO 189 188 188 PRO PRO A . n A 1 190 TYR 190 189 189 TYR TYR A . n A 1 191 LEU 191 190 190 LEU LEU A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 200 200 ZN ZN A . C 3 CL 1 201 1 CL CL A . D 4 HOH 1 202 2 HOH HOH A . D 4 HOH 2 203 3 HOH HOH A . D 4 HOH 3 204 4 HOH HOH A . D 4 HOH 4 205 5 HOH HOH A . D 4 HOH 5 206 6 HOH HOH A . D 4 HOH 6 207 7 HOH HOH A . D 4 HOH 7 208 8 HOH HOH A . D 4 HOH 8 209 9 HOH HOH A . D 4 HOH 9 210 10 HOH HOH A . D 4 HOH 10 211 11 HOH HOH A . D 4 HOH 11 212 12 HOH HOH A . D 4 HOH 12 213 13 HOH HOH A . D 4 HOH 13 214 14 HOH HOH A . D 4 HOH 14 215 15 HOH HOH A . D 4 HOH 15 216 16 HOH HOH A . D 4 HOH 16 217 17 HOH HOH A . D 4 HOH 17 218 18 HOH HOH A . D 4 HOH 18 219 19 HOH HOH A . D 4 HOH 19 220 20 HOH HOH A . D 4 HOH 20 221 21 HOH HOH A . D 4 HOH 21 222 22 HOH HOH A . D 4 HOH 22 223 23 HOH HOH A . D 4 HOH 23 224 24 HOH HOH A . D 4 HOH 24 225 25 HOH HOH A . D 4 HOH 25 226 26 HOH HOH A . D 4 HOH 26 227 27 HOH HOH A . D 4 HOH 27 228 28 HOH HOH A . D 4 HOH 28 229 29 HOH HOH A . D 4 HOH 29 230 30 HOH HOH A . D 4 HOH 30 231 31 HOH HOH A . D 4 HOH 31 232 32 HOH HOH A . D 4 HOH 32 233 33 HOH HOH A . D 4 HOH 33 234 34 HOH HOH A . D 4 HOH 34 235 35 HOH HOH A . D 4 HOH 35 236 36 HOH HOH A . D 4 HOH 36 237 37 HOH HOH A . D 4 HOH 37 238 38 HOH HOH A . D 4 HOH 38 239 39 HOH HOH A . D 4 HOH 39 240 40 HOH HOH A . D 4 HOH 40 241 41 HOH HOH A . D 4 HOH 41 242 42 HOH HOH A . D 4 HOH 42 243 43 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 36 A MSE 35 ? MET SELENOMETHIONINE 3 A MSE 82 A MSE 81 ? MET SELENOMETHIONINE 4 A MSE 107 A MSE 106 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4350 ? 1 MORE -59 ? 1 'SSA (A^2)' 17540 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 136.7190000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 166 ? A CYS 165 ? 1_555 ZN ? B ZN . ? A ZN 200 ? 1_555 SG ? A CYS 169 ? A CYS 168 ? 1_555 110.2 ? 2 SG ? A CYS 166 ? A CYS 165 ? 1_555 ZN ? B ZN . ? A ZN 200 ? 1_555 SG ? A CYS 181 ? A CYS 180 ? 1_555 112.1 ? 3 SG ? A CYS 169 ? A CYS 168 ? 1_555 ZN ? B ZN . ? A ZN 200 ? 1_555 SG ? A CYS 181 ? A CYS 180 ? 1_555 112.2 ? 4 SG ? A CYS 166 ? A CYS 165 ? 1_555 ZN ? B ZN . ? A ZN 200 ? 1_555 SG ? A CYS 184 ? A CYS 183 ? 1_555 107.3 ? 5 SG ? A CYS 169 ? A CYS 168 ? 1_555 ZN ? B ZN . ? A ZN 200 ? 1_555 SG ? A CYS 184 ? A CYS 183 ? 1_555 106.5 ? 6 SG ? A CYS 181 ? A CYS 180 ? 1_555 ZN ? B ZN . ? A ZN 200 ? 1_555 SG ? A CYS 184 ? A CYS 183 ? 1_555 108.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-05-20 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-10-24 4 'Structure model' 1 3 2017-10-25 5 'Structure model' 1 4 2019-07-24 6 'Structure model' 1 5 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Author supporting evidence' 5 4 'Structure model' 'Refinement description' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Refinement description' 9 6 'Structure model' 'Database references' 10 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_struct_assembly_auth_evidence 2 4 'Structure model' software 3 5 'Structure model' software 4 5 'Structure model' struct_conn 5 6 'Structure model' database_2 6 6 'Structure model' struct_ref_seq_dif 7 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_software.classification' 4 5 'Structure model' '_software.contact_author' 5 5 'Structure model' '_software.contact_author_email' 6 5 'Structure model' '_software.language' 7 5 'Structure model' '_software.location' 8 5 'Structure model' '_software.name' 9 5 'Structure model' '_software.type' 10 5 'Structure model' '_software.version' 11 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 6 'Structure model' '_database_2.pdbx_DOI' 13 6 'Structure model' '_database_2.pdbx_database_accession' 14 6 'Structure model' '_struct_ref_seq_dif.details' 15 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 16.6441 _pdbx_refine_tls.origin_y 25.3781 _pdbx_refine_tls.origin_z 61.9740 _pdbx_refine_tls.T[1][1] -0.1523 _pdbx_refine_tls.T[2][2] -0.1421 _pdbx_refine_tls.T[3][3] -0.1545 _pdbx_refine_tls.T[1][2] -0.0519 _pdbx_refine_tls.T[1][3] 0.0003 _pdbx_refine_tls.T[2][3] 0.0085 _pdbx_refine_tls.L[1][1] 1.5378 _pdbx_refine_tls.L[2][2] 3.3908 _pdbx_refine_tls.L[3][3] 5.9005 _pdbx_refine_tls.L[1][2] -1.5082 _pdbx_refine_tls.L[1][3] 2.3567 _pdbx_refine_tls.L[2][3] -3.3548 _pdbx_refine_tls.S[1][1] -0.0174 _pdbx_refine_tls.S[2][2] -0.1391 _pdbx_refine_tls.S[3][3] 0.1565 _pdbx_refine_tls.S[1][2] 0.2052 _pdbx_refine_tls.S[1][3] 0.1697 _pdbx_refine_tls.S[2][3] -0.1022 _pdbx_refine_tls.S[2][1] 0.1243 _pdbx_refine_tls.S[3][1] -0.3315 _pdbx_refine_tls.S[3][2] 0.0080 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 2 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 191 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 190 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 5 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 autoSHARP . ? ? ? ? phasing ? ? ? 10 # _pdbx_entry_details.entry_id 3D00 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 MSE _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 B _pdbx_validate_rmsd_bond.auth_atom_id_2 SE _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 MSE _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 B _pdbx_validate_rmsd_bond.bond_value 2.248 _pdbx_validate_rmsd_bond.bond_target_value 1.950 _pdbx_validate_rmsd_bond.bond_deviation 0.298 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.034 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 144 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 144 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 144 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 129.59 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 14.29 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 7 ? ? 43.77 -117.78 2 1 CYS A 58 ? ? 71.58 -54.07 3 1 MSE A 106 ? ? -100.41 64.55 4 1 PRO A 108 ? ? -59.24 -1.83 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 16 ? CB ? A GLU 17 CB 2 1 Y 1 A GLU 16 ? CG ? A GLU 17 CG 3 1 Y 1 A GLU 16 ? CD ? A GLU 17 CD 4 1 Y 1 A GLU 16 ? OE1 ? A GLU 17 OE1 5 1 Y 1 A GLU 16 ? OE2 ? A GLU 17 OE2 6 1 Y 1 A LYS 17 ? CD ? A LYS 18 CD 7 1 Y 1 A LYS 17 ? CE ? A LYS 18 CE 8 1 Y 1 A LYS 17 ? NZ ? A LYS 18 NZ 9 1 Y 1 A LEU 48 ? CG ? A LEU 49 CG 10 1 Y 1 A LEU 48 ? CD1 ? A LEU 49 CD1 11 1 Y 1 A LEU 48 ? CD2 ? A LEU 49 CD2 12 1 Y 1 A ARG 56 ? NE ? A ARG 57 NE 13 1 Y 1 A ARG 56 ? CZ ? A ARG 57 CZ 14 1 Y 1 A ARG 56 ? NH1 ? A ARG 57 NH1 15 1 Y 1 A ARG 56 ? NH2 ? A ARG 57 NH2 16 1 Y 1 A GLU 95 ? CD ? A GLU 96 CD 17 1 Y 1 A GLU 95 ? OE1 ? A GLU 96 OE1 18 1 Y 1 A GLU 95 ? OE2 ? A GLU 96 OE2 19 1 Y 1 A LYS 105 ? CD ? A LYS 106 CD 20 1 Y 1 A LYS 105 ? CE ? A LYS 106 CE 21 1 Y 1 A LYS 105 ? NZ ? A LYS 106 NZ 22 1 Y 1 A GLN 110 ? OE1 ? A GLN 111 OE1 23 1 Y 1 A GLN 110 ? NE2 ? A GLN 111 NE2 24 1 Y 1 A LYS 118 ? CE ? A LYS 119 CE 25 1 Y 1 A LYS 118 ? NZ ? A LYS 119 NZ 26 1 Y 1 A LYS 120 ? CE ? A LYS 121 CE 27 1 Y 1 A LYS 120 ? NZ ? A LYS 121 NZ 28 1 Y 1 A GLU 128 ? CG ? A GLU 129 CG 29 1 Y 1 A GLU 128 ? CD ? A GLU 129 CD 30 1 Y 1 A GLU 128 ? OE1 ? A GLU 129 OE1 31 1 Y 1 A GLU 128 ? OE2 ? A GLU 129 OE2 32 1 Y 1 A ARG 129 ? CD ? A ARG 130 CD 33 1 Y 1 A ARG 129 ? NE ? A ARG 130 NE 34 1 Y 1 A ARG 129 ? CZ ? A ARG 130 CZ 35 1 Y 1 A ARG 129 ? NH1 ? A ARG 130 NH1 36 1 Y 1 A ARG 129 ? NH2 ? A ARG 130 NH2 37 1 Y 1 A LYS 132 ? CG ? A LYS 133 CG 38 1 Y 1 A LYS 132 ? CD ? A LYS 133 CD 39 1 Y 1 A LYS 132 ? CE ? A LYS 133 CE 40 1 Y 1 A LYS 132 ? NZ ? A LYS 133 NZ 41 1 Y 1 A GLU 136 ? CG ? A GLU 137 CG 42 1 Y 1 A GLU 136 ? CD ? A GLU 137 CD 43 1 Y 1 A GLU 136 ? OE1 ? A GLU 137 OE1 44 1 Y 1 A GLU 136 ? OE2 ? A GLU 137 OE2 45 1 Y 1 A LYS 148 ? CD ? A LYS 149 CD 46 1 Y 1 A LYS 148 ? CE ? A LYS 149 CE 47 1 Y 1 A LYS 148 ? NZ ? A LYS 149 NZ 48 1 Y 1 A LYS 150 ? NZ ? A LYS 151 NZ 49 1 Y 1 A GLU 155 ? CD ? A GLU 156 CD 50 1 Y 1 A GLU 155 ? OE1 ? A GLU 156 OE1 51 1 Y 1 A GLU 155 ? OE2 ? A GLU 156 OE2 52 1 Y 1 A LYS 156 ? NZ ? A LYS 157 NZ 53 1 Y 1 A LYS 157 ? CG ? A LYS 158 CG 54 1 Y 1 A LYS 157 ? CD ? A LYS 158 CD 55 1 Y 1 A LYS 157 ? CE ? A LYS 158 CE 56 1 Y 1 A LYS 157 ? NZ ? A LYS 158 NZ 57 1 Y 1 A HIS 158 ? CG ? A HIS 159 CG 58 1 Y 1 A HIS 158 ? ND1 ? A HIS 159 ND1 59 1 Y 1 A HIS 158 ? CD2 ? A HIS 159 CD2 60 1 Y 1 A HIS 158 ? CE1 ? A HIS 159 CE1 61 1 Y 1 A HIS 158 ? NE2 ? A HIS 159 NE2 62 1 Y 1 A LYS 159 ? CG ? A LYS 160 CG 63 1 Y 1 A LYS 159 ? CD ? A LYS 160 CD 64 1 Y 1 A LYS 159 ? CE ? A LYS 160 CE 65 1 Y 1 A LYS 159 ? NZ ? A LYS 160 NZ 66 1 Y 1 A LYS 161 ? CE ? A LYS 162 CE 67 1 Y 1 A LYS 161 ? NZ ? A LYS 162 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A THR 121 ? A THR 122 3 1 Y 1 A LYS 122 ? A LYS 123 4 1 Y 1 A LYS 123 ? A LYS 124 5 1 Y 1 A GLU 124 ? A GLU 125 6 1 Y 1 A GLN 125 ? A GLN 126 7 1 Y 1 A ASP 126 ? A ASP 127 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 'CHLORIDE ION' CL 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #