HEADER METAL BINDING PROTEIN 30-APR-08 3D00 TITLE CRYSTAL STRUCTURE OF A TUNGSTEN FORMYLMETHANOFURAN DEHYDROGENASE TITLE 2 SUBUNIT E (FMDE)-LIKE PROTEIN (SYN_00638) FROM SYNTROPHUS TITLE 3 ACIDITROPHICUS AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUNGSTEN FORMYLMETHANOFURAN DEHYDROGENASE SUBUNIT E; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTROPHUS ACIDITROPHICUS; SOURCE 3 ORGANISM_TAXID: 56780; SOURCE 4 STRAIN: SB; SOURCE 5 GENE: YP_460196.1, SYNAS_01490, SYN_00638; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS FWDE/GAPDH DOMAIN-LIKE FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 10 06-NOV-24 3D00 1 REMARK REVDAT 9 01-FEB-23 3D00 1 REMARK SEQADV REVDAT 8 24-JUL-19 3D00 1 REMARK LINK REVDAT 7 25-OCT-17 3D00 1 REMARK REVDAT 6 24-OCT-12 3D00 1 JRNL REVDAT 5 13-JUL-11 3D00 1 VERSN REVDAT 4 23-MAR-11 3D00 1 HEADER TITLE KEYWDS REVDAT 3 12-JAN-11 3D00 1 JRNL REVDAT 2 24-FEB-09 3D00 1 VERSN REVDAT 1 20-MAY-08 3D00 0 JRNL AUTH H.L.AXELROD,D.DAS,P.ABDUBEK,T.ASTAKHOVA,C.BAKOLITSA, JRNL AUTH 2 D.CARLTON,C.CHEN,H.J.CHIU,T.CLAYTON,M.C.DELLER,L.DUAN, JRNL AUTH 3 K.ELLROTT,C.L.FARR,J.FEUERHELM,J.C.GRANT,A.GRZECHNIK, JRNL AUTH 4 G.W.HAN,L.JAROSZEWSKI,K.K.JIN,H.E.KLOCK,M.W.KNUTH,P.KOZBIAL, JRNL AUTH 5 S.S.KRISHNA,A.KUMAR,W.W.LAM,D.MARCIANO,D.MCMULLAN, JRNL AUTH 6 M.D.MILLER,A.T.MORSE,E.NIGOGHOSSIAN,A.NOPAKUN,L.OKACH, JRNL AUTH 7 C.PUCKETT,R.REYES,N.SEFCOVIC,H.J.TIEN,C.B.TRAME, JRNL AUTH 8 H.VAN DEN BEDEM,D.WEEKES,T.WOOTEN,Q.XU,K.O.HODGSON,J.WOOLEY, JRNL AUTH 9 M.A.ELSLIGER,A.M.DEACON,A.GODZIK,S.A.LESLEY,I.A.WILSON JRNL TITL STRUCTURES OF THREE MEMBERS OF PFAM PF02663 (FMDE) JRNL TITL 2 IMPLICATED IN MICROBIAL METHANOGENESIS REVEAL A CONSERVED JRNL TITL 3 ALPHA+BETA CORE DOMAIN AND AN AUXILIARY C-TERMINAL JRNL TITL 4 TREBLE-CLEF ZINC FINGER. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1335 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20944230 JRNL DOI 10.1107/S1744309110020166 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 855 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1136 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.3470 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1388 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.73000 REMARK 3 B22 (A**2) : 1.73000 REMARK 3 B33 (A**2) : -3.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.170 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.433 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1445 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 961 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1972 ; 1.604 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2356 ; 1.031 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 189 ; 6.400 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;34.474 ;23.774 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 225 ;14.661 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;21.608 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 224 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1615 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 292 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 285 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 900 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 710 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 747 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 37 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.114 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 37 ; 0.226 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 954 ; 1.214 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 376 ; 0.264 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1489 ; 1.913 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 576 ; 1.086 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 480 ; 1.576 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6441 25.3781 61.9740 REMARK 3 T TENSOR REMARK 3 T11: -0.1523 T22: -0.1421 REMARK 3 T33: -0.1545 T12: -0.0519 REMARK 3 T13: 0.0003 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 1.5378 L22: 3.3908 REMARK 3 L33: 5.9005 L12: -1.5082 REMARK 3 L13: 2.3567 L23: -3.3548 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: 0.2052 S13: 0.1697 REMARK 3 S21: 0.1243 S22: -0.1391 S23: -0.1022 REMARK 3 S31: -0.3315 S32: 0.0080 S33: 0.1565 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. ZINC WAS MODELED BASED ON X-RAY FLUORESCENCE SCAN REMARK 3 AND ANOMALOUS DIFFERENCE FOURIER MAP CALCULATIONS. REMARK 3 5. CHLORIDE WAS MODELED BASED ON CRYSTALLIZATION CONDITIONS. REMARK 4 REMARK 4 3D00 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047419. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97817 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16955 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.386 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.01100 REMARK 200 R SYM FOR SHELL (I) : 1.13400 REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01M NICL2, 20.0% PEG MME 2000, 0.1M REMARK 280 TRIS-HCL PH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.35950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 27.17800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 27.17800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.17975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 27.17800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 27.17800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 102.53925 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 27.17800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.17800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.17975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 27.17800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.17800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 102.53925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.35950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE PROTOMER MAY FORM A DIMER BASED ON REMARK 300 CRYSTAL PACKING ANALYSIS. ANALYTICAL SIZE-EXCLUSION CHROMATOGRAPHY REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIC REMARK 300 FORM IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 136.71900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 THR A 121 REMARK 465 LYS A 122 REMARK 465 LYS A 123 REMARK 465 GLU A 124 REMARK 465 GLN A 125 REMARK 465 ASP A 126 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 16 CB CG CD OE1 OE2 REMARK 470 LYS A 17 CD CE NZ REMARK 470 LEU A 48 CG CD1 CD2 REMARK 470 ARG A 56 NE CZ NH1 NH2 REMARK 470 GLU A 95 CD OE1 OE2 REMARK 470 LYS A 105 CD CE NZ REMARK 470 GLN A 110 OE1 NE2 REMARK 470 LYS A 118 CE NZ REMARK 470 LYS A 120 CE NZ REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 ARG A 129 CD NE CZ NH1 NH2 REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 GLU A 136 CG CD OE1 OE2 REMARK 470 LYS A 148 CD CE NZ REMARK 470 LYS A 150 NZ REMARK 470 GLU A 155 CD OE1 OE2 REMARK 470 LYS A 156 NZ REMARK 470 LYS A 157 CG CD CE NZ REMARK 470 HIS A 158 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 LYS A 161 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 1 CG MSE A 1 SE 0.298 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 144 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 7 -117.78 43.77 REMARK 500 CYS A 58 -54.07 71.58 REMARK 500 MSE A 106 64.55 -100.41 REMARK 500 PRO A 108 -1.83 -59.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 165 SG REMARK 620 2 CYS A 168 SG 110.2 REMARK 620 3 CYS A 180 SG 112.1 112.2 REMARK 620 4 CYS A 183 SG 107.3 106.5 108.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 383639 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. DBREF 3D00 A 1 190 UNP Q2LQ23 Q2LQ23_SYNAS 1 190 SEQADV 3D00 GLY A 0 UNP Q2LQ23 EXPRESSION TAG SEQRES 1 A 191 GLY MSE THR ALA ARG ASN ILE LEU SER TYR SER TYR GLU SEQRES 2 A 191 GLU TYR VAL GLU LYS ILE THR ALA PHE HIS GLY TYR PRO SEQRES 3 A 191 ALA PRO GLY VAL LEU ILE GLY GLY PHE MSE VAL ASP LEU SEQRES 4 A 191 ALA VAL LYS ASN LEU PRO GLU GLY ILE LEU TYR ASP ALA SEQRES 5 A 191 ILE CYS GLU THR ARG THR CYS LEU PRO ASP ALA VAL GLN SEQRES 6 A 191 LEU LEU THR PRO CYS THR PHE GLY ASN GLY TRP LEU THR SEQRES 7 A 191 VAL LEU PRO MSE GLY LEU PHE ALA VAL SER LEU TYR ASP SEQRES 8 A 191 LYS PHE THR GLY GLU GLY VAL ARG VAL PHE LEU ASP VAL SEQRES 9 A 191 GLU LYS MSE GLY PRO TRP GLN GLU ILE ARG ASN TRP PHE SEQRES 10 A 191 LEU LYS LEU LYS THR LYS LYS GLU GLN ASP SER GLU ARG SEQRES 11 A 191 LEU PHE LYS GLU ILE ARG GLU ALA GLY PRO ASP ILE LEU SEQRES 12 A 191 GLU LEU ARG ASN VAL LYS LEU LYS PRO GLY PHE LEU GLU SEQRES 13 A 191 LYS LYS HIS LYS GLY LYS ILE VAL LEU CYS PRO GLN CYS SEQRES 14 A 191 ARG GLU ALA TYR PRO ALA GLN ASP GLY GLU LEU CYS LEU SEQRES 15 A 191 SER CYS GLN GLY GLY SER PRO TYR LEU MODRES 3D00 MSE A 1 MET SELENOMETHIONINE MODRES 3D00 MSE A 35 MET SELENOMETHIONINE MODRES 3D00 MSE A 81 MET SELENOMETHIONINE MODRES 3D00 MSE A 106 MET SELENOMETHIONINE HET MSE A 1 16 HET MSE A 35 8 HET MSE A 81 8 HET MSE A 106 8 HET ZN A 200 1 HET CL A 201 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 ZN ZN 2+ FORMUL 3 CL CL 1- FORMUL 4 HOH *42(H2 O) HELIX 1 1 SER A 10 GLY A 23 1 14 HELIX 2 2 ALA A 26 ASN A 42 1 17 HELIX 3 3 CYS A 58 THR A 67 1 10 HELIX 4 4 VAL A 103 MSE A 106 5 4 HELIX 5 5 TRP A 109 LEU A 117 1 9 HELIX 6 6 SER A 127 GLY A 138 1 12 HELIX 7 7 LYS A 150 GLU A 155 5 6 HELIX 8 8 GLN A 175 GLY A 177 5 3 HELIX 9 9 CYS A 180 GLY A 185 1 6 SHEET 1 A 5 LEU A 76 VAL A 78 0 SHEET 2 A 5 TYR A 49 CYS A 53 1 N CYS A 53 O THR A 77 SHEET 3 A 5 ALA A 85 ASP A 90 -1 O SER A 87 N ILE A 52 SHEET 4 A 5 GLU A 95 LEU A 101 -1 O GLU A 95 N ASP A 90 SHEET 5 A 5 LEU A 142 LYS A 148 -1 O VAL A 147 N GLY A 96 SHEET 1 B 2 ILE A 162 LEU A 164 0 SHEET 2 B 2 ALA A 171 PRO A 173 -1 O TYR A 172 N VAL A 163 LINK C AMSE A 1 N THR A 2 1555 1555 1.34 LINK C BMSE A 1 N THR A 2 1555 1555 1.40 LINK C PHE A 34 N MSE A 35 1555 1555 1.32 LINK C MSE A 35 N VAL A 36 1555 1555 1.31 LINK C PRO A 80 N MSE A 81 1555 1555 1.33 LINK C MSE A 81 N GLY A 82 1555 1555 1.34 LINK C LYS A 105 N MSE A 106 1555 1555 1.32 LINK C MSE A 106 N GLY A 107 1555 1555 1.33 LINK SG CYS A 165 ZN ZN A 200 1555 1555 2.38 LINK SG CYS A 168 ZN ZN A 200 1555 1555 2.47 LINK SG CYS A 180 ZN ZN A 200 1555 1555 2.39 LINK SG CYS A 183 ZN ZN A 200 1555 1555 2.49 SITE 1 AC1 4 CYS A 165 CYS A 168 CYS A 180 CYS A 183 SITE 1 AC2 4 THR A 55 ARG A 56 PRO A 80 GLY A 82 CRYST1 54.356 54.356 136.719 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018397 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018397 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007314 0.00000 HETATM 1 N AMSE A 1 29.997 41.558 42.887 0.50 48.09 N HETATM 2 N BMSE A 1 29.495 38.872 43.816 0.50 46.29 N HETATM 3 CA AMSE A 1 29.768 40.622 44.056 0.50 48.76 C HETATM 4 CA BMSE A 1 29.890 40.287 44.199 0.50 46.17 C HETATM 5 C AMSE A 1 28.657 41.138 45.002 0.50 47.99 C HETATM 6 C BMSE A 1 28.716 41.137 44.895 0.50 46.76 C HETATM 7 O AMSE A 1 28.906 42.047 45.803 0.50 48.36 O HETATM 8 O BMSE A 1 28.910 42.288 45.287 0.50 47.40 O HETATM 9 CB AMSE A 1 31.087 40.428 44.829 0.50 49.33 C HETATM 10 CB BMSE A 1 30.604 40.985 43.001 0.50 45.68 C HETATM 11 CG AMSE A 1 31.094 39.205 45.755 0.50 49.98 C HETATM 12 CG BMSE A 1 29.691 41.532 41.989 0.50 45.08 C HETATM 13 SE AMSE A 1 30.628 37.560 44.789 0.37 51.24 SE HETATM 14 SE BMSE A 1 30.454 42.492 40.105 0.38 43.99 SE HETATM 15 CE AMSE A 1 31.938 37.669 43.355 0.50 50.12 C HETATM 16 CE BMSE A 1 31.752 40.984 39.981 0.50 42.95 C