HEADER TRANSFERASE 01-MAY-08 3D0F TITLE STRUCTURE OF THE BIG_1156.2 DOMAIN OF PUTATIVE PENICILLIN-BINDING TITLE 2 PROTEIN MRCA FROM NITROSOMONAS EUROPAEA ATCC 19718 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING 1 TRANSMEMBRANE PROTEIN MRCA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TARGETED DOMAIN: RESIDUES 318-420; COMPND 5 SYNONYM: PEPTIDOGLYCAN SYNTHETASE; COMPND 6 EC: 2.4.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOMONAS EUROPAEA ATCC 19718; SOURCE 3 ORGANISM_TAXID: 228410; SOURCE 4 STRAIN: IFO 14298; SOURCE 5 ATCC: 19718; SOURCE 6 GENE: MRCA, NE2317; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: MODIFIED BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS BIG_1156.2, PENICILLIN-BINDING 1, NITROSOMONAS EUROPAEA, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, CELL SHAPE, CELL WALL KEYWDS 4 BIOGENESIS/DEGRADATION, GLYCOSYLTRANSFERASE, PEPTIDOGLYCAN KEYWDS 5 SYNTHESIS, TRANSFERASE, TRANSMEMBRANE, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,R.MULLIGAN,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 5 30-OCT-24 3D0F 1 REMARK SEQADV LINK REVDAT 4 25-OCT-17 3D0F 1 REMARK REVDAT 3 13-JUL-11 3D0F 1 VERSN REVDAT 2 24-FEB-09 3D0F 1 VERSN REVDAT 1 01-JUL-08 3D0F 0 JRNL AUTH M.E.CUFF,R.MULLIGAN,S.CLANCY,A.JOACHIMIAK JRNL TITL STRUCTURE OF THE BIG_1156.2 DOMAIN OF PUTATIVE JRNL TITL 2 PENICILLIN-BINDING PROTEIN MRCA FROM NITROSOMONAS EUROPAEA JRNL TITL 3 ATCC 19718. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 26155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1316 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1797 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1628 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 378 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25000 REMARK 3 B22 (A**2) : 0.68000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.66000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.628 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1768 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1290 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2401 ; 1.641 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3165 ; 0.952 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 238 ; 5.798 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;32.216 ;24.074 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 345 ;14.352 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ; 9.716 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 266 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1979 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 337 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 319 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1447 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 831 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1003 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 266 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.171 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 42 ; 0.266 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.170 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1341 ; 1.512 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 441 ; 0.320 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1776 ; 1.781 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 729 ; 2.799 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 612 ; 4.068 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 316 A 420 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9602 2.1863 20.4034 REMARK 3 T TENSOR REMARK 3 T11: -0.0618 T22: -0.0821 REMARK 3 T33: -0.0578 T12: -0.0071 REMARK 3 T13: -0.0007 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 0.9873 L22: 0.2254 REMARK 3 L33: 1.9759 L12: 0.2953 REMARK 3 L13: -0.9041 L23: -0.4239 REMARK 3 S TENSOR REMARK 3 S11: -0.0547 S12: 0.0154 S13: -0.0487 REMARK 3 S21: -0.0609 S22: -0.0470 S23: -0.0675 REMARK 3 S31: 0.0813 S32: 0.0480 S33: 0.1018 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 316 B 420 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3206 0.8432 28.1782 REMARK 3 T TENSOR REMARK 3 T11: -0.0435 T22: -0.0959 REMARK 3 T33: -0.0254 T12: 0.0003 REMARK 3 T13: 0.0013 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 1.4531 L22: 0.0368 REMARK 3 L33: 3.2137 L12: 0.0946 REMARK 3 L13: -1.6240 L23: -0.2531 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: 0.0738 S13: 0.0827 REMARK 3 S21: -0.0546 S22: 0.0419 S23: -0.0009 REMARK 3 S31: -0.0493 S32: -0.2905 S33: -0.0818 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D0F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047434. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97959, 0.97970 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27910 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.34700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM 5.0, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.5, 30% PEG 4000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.10950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 315 REMARK 465 SER B 315 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 472 O HOH A 579 2646 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 417 -166.35 -128.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC87353.2 RELATED DB: TARGETDB DBREF 3D0F A 318 420 UNP Q81ZZ3 Q81ZZ3_NITEU 318 420 DBREF 3D0F B 318 420 UNP Q81ZZ3 Q81ZZ3_NITEU 318 420 SEQADV 3D0F SER A 315 UNP Q81ZZ3 EXPRESSION TAG SEQADV 3D0F ASN A 316 UNP Q81ZZ3 EXPRESSION TAG SEQADV 3D0F ALA A 317 UNP Q81ZZ3 EXPRESSION TAG SEQADV 3D0F SER B 315 UNP Q81ZZ3 EXPRESSION TAG SEQADV 3D0F ASN B 316 UNP Q81ZZ3 EXPRESSION TAG SEQADV 3D0F ALA B 317 UNP Q81ZZ3 EXPRESSION TAG SEQRES 1 A 106 SER ASN ALA TYR ARG GLY PRO GLU ALA PHE LEU LYS LEU SEQRES 2 A 106 PRO LYS ASP LEU LYS ASP ARG GLU ALA LEU GLN ASP ILE SEQRES 3 A 106 MSE GLN ASP ILE GLY ASN SER ASP ASP ILE LEU ALA ALA SEQRES 4 A 106 VAL VAL LEU SER ALA THR PRO GLY ALA VAL GLU ALA PHE SEQRES 5 A 106 ARG LYS ASN GLY GLU THR ILE ARG ILE THR GLY ASP GLY SEQRES 6 A 106 LEU LYS ALA ALA HIS ARG PHE LEU SER ASN ASP PRO LYS SEQRES 7 A 106 ILE GLY GLU LYS ARG ILE ARG PRO GLY ALA LEU ILE ARG SEQRES 8 A 106 VAL LYS LYS THR GLU LYS GLY SER TRP GLN ILE VAL GLN SEQRES 9 A 106 LEU PRO SEQRES 1 B 106 SER ASN ALA TYR ARG GLY PRO GLU ALA PHE LEU LYS LEU SEQRES 2 B 106 PRO LYS ASP LEU LYS ASP ARG GLU ALA LEU GLN ASP ILE SEQRES 3 B 106 MSE GLN ASP ILE GLY ASN SER ASP ASP ILE LEU ALA ALA SEQRES 4 B 106 VAL VAL LEU SER ALA THR PRO GLY ALA VAL GLU ALA PHE SEQRES 5 B 106 ARG LYS ASN GLY GLU THR ILE ARG ILE THR GLY ASP GLY SEQRES 6 B 106 LEU LYS ALA ALA HIS ARG PHE LEU SER ASN ASP PRO LYS SEQRES 7 B 106 ILE GLY GLU LYS ARG ILE ARG PRO GLY ALA LEU ILE ARG SEQRES 8 B 106 VAL LYS LYS THR GLU LYS GLY SER TRP GLN ILE VAL GLN SEQRES 9 B 106 LEU PRO MODRES 3D0F MSE A 341 MET SELENOMETHIONINE MODRES 3D0F MSE B 341 MET SELENOMETHIONINE HET MSE A 341 8 HET MSE B 341 8 HET PO4 B 501 5 HET GOL B 502 6 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 PO4 O4 P 3- FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *378(H2 O) HELIX 1 1 ASP A 333 MSE A 341 1 9 HELIX 2 2 THR A 376 LYS A 381 5 6 HELIX 3 3 ALA A 383 LEU A 387 5 5 HELIX 4 4 ILE A 393 ARG A 397 5 5 HELIX 5 5 ASP B 333 MSE B 341 1 9 HELIX 6 6 ASP B 378 LYS B 381 5 4 HELIX 7 7 ALA B 383 LEU B 387 5 5 HELIX 8 8 ASP B 390 GLY B 394 5 5 SHEET 1 A 5 ALA A 323 PHE A 324 0 SHEET 2 A 5 ALA B 402 LYS B 408 -1 O LEU B 403 N ALA A 323 SHEET 3 A 5 LEU B 351 THR B 359 -1 N LEU B 351 O VAL B 406 SHEET 4 A 5 ALA B 362 ARG B 367 -1 O GLU B 364 N LEU B 356 SHEET 5 A 5 THR B 372 THR B 376 -1 O ILE B 373 N ALA B 365 SHEET 1 B 3 ALA A 323 PHE A 324 0 SHEET 2 B 3 ALA B 402 LYS B 408 -1 O LEU B 403 N ALA A 323 SHEET 3 B 3 TRP B 414 VAL B 417 -1 O VAL B 417 N ARG B 405 SHEET 1 C 5 THR A 372 ILE A 375 0 SHEET 2 C 5 ALA A 362 ARG A 367 -1 N VAL A 363 O ILE A 375 SHEET 3 C 5 LEU A 351 THR A 359 -1 N LEU A 356 O GLU A 364 SHEET 4 C 5 ALA A 402 LYS A 408 -1 O VAL A 406 N LEU A 351 SHEET 5 C 5 TRP A 414 VAL A 417 -1 O VAL A 417 N ARG A 405 SHEET 1 D 5 THR A 372 ILE A 375 0 SHEET 2 D 5 ALA A 362 ARG A 367 -1 N VAL A 363 O ILE A 375 SHEET 3 D 5 LEU A 351 THR A 359 -1 N LEU A 356 O GLU A 364 SHEET 4 D 5 ALA A 402 LYS A 408 -1 O VAL A 406 N LEU A 351 SHEET 5 D 5 ALA B 323 PHE B 324 -1 O ALA B 323 N LEU A 403 LINK C ILE A 340 N MSE A 341 1555 1555 1.34 LINK C MSE A 341 N GLN A 342 1555 1555 1.32 LINK C ILE B 340 N MSE B 341 1555 1555 1.33 LINK C MSE B 341 N GLN B 342 1555 1555 1.34 SITE 1 AC1 4 ARG A 405 ASP B 343 ILE B 344 GLY B 345 SITE 1 AC2 8 ALA B 358 THR B 359 PRO B 360 LEU B 387 SITE 2 AC2 8 SER B 388 ARG B 397 ILE B 398 ARG B 399 CRYST1 38.206 52.219 56.860 90.00 107.87 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026174 0.000000 0.008440 0.00000 SCALE2 0.000000 0.019150 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018479 0.00000