HEADER HYDROLASE 01-MAY-08 3D0K TITLE CRYSTAL STRUCTURE OF THE LPQC, POLY(3-HYDROXYBUTYRATE) DEPOLYMERASE TITLE 2 FROM BORDETELLA PARAPERTUSSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE POLY(3-HYDROXYBUTYRATE) DEPOLYMERASE LPQC; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PARAPERTUSSIS 12822; SOURCE 3 ORGANISM_TAXID: 257311; SOURCE 4 STRAIN: 12822 / NCTC 13253; SOURCE 5 ATCC: BAA-587; SOURCE 6 GENE: BPP4128; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19B KEYWDS ALPHA-BETA-ALPHA SANDWICH, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,C.TESAR,R.JEDRZEJCZAK,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 30-OCT-24 3D0K 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3D0K 1 VERSN REVDAT 2 24-FEB-09 3D0K 1 VERSN REVDAT 1 01-JUL-08 3D0K 0 JRNL AUTH Y.KIM,C.TESAR,R.JEDRZEJCZAK,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF THE LPQC, POLY(3-HYDROXYBUTYRATE) JRNL TITL 2 DEPOLYMERASE FROM BORDETELLA PARAPERTUSSIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 52230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2803 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3773 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4530 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 439 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : 1.35000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.264 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4853 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6643 ; 1.639 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 599 ; 6.211 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 250 ;35.634 ;22.360 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 667 ;15.257 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;19.518 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 675 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3920 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2397 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3262 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 416 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.237 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.182 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3035 ; 1.077 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4738 ; 1.705 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2074 ; 3.075 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1905 ; 4.704 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 296 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7433 30.1432 92.8531 REMARK 3 T TENSOR REMARK 3 T11: -0.0599 T22: -0.0403 REMARK 3 T33: -0.0289 T12: 0.0137 REMARK 3 T13: -0.0100 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 0.5706 L22: 0.6383 REMARK 3 L33: 1.2958 L12: 0.1083 REMARK 3 L13: 0.3970 L23: 0.3952 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: -0.0272 S13: -0.0049 REMARK 3 S21: 0.0170 S22: -0.0198 S23: -0.0233 REMARK 3 S31: -0.0016 S32: -0.0702 S33: 0.0123 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 296 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3231 33.9353 42.2585 REMARK 3 T TENSOR REMARK 3 T11: -0.0404 T22: -0.0551 REMARK 3 T33: -0.0286 T12: -0.0074 REMARK 3 T13: 0.0110 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.5549 L22: 0.5327 REMARK 3 L33: 0.9334 L12: -0.0642 REMARK 3 L13: 0.2626 L23: -0.1936 REMARK 3 S TENSOR REMARK 3 S11: -0.0238 S12: -0.0040 S13: -0.0163 REMARK 3 S21: -0.0269 S22: 0.0276 S23: -0.0307 REMARK 3 S31: 0.0014 S32: 0.0066 S33: -0.0038 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54978 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 41.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.59800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, DM, SHELXD, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 0.1 M MES PH REMARK 280 6.5, 10% DIOXANE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.85500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE MONOMERIC ASSEMBLY OF THE BIOLOGICAL REMARK 300 UNIT THAT IS SHOWN IN REMARK 350 IS PUTATIVE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 29 REMARK 465 ASP A 30 REMARK 465 ARG A 31 REMARK 465 ASP A 217 REMARK 465 ASP A 218 REMARK 465 GLY A 297 REMARK 465 SER A 298 REMARK 465 GLN A 299 REMARK 465 SER A 300 REMARK 465 ALA A 301 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 ASP B 217 REMARK 465 ASP B 218 REMARK 465 GLY B 297 REMARK 465 SER B 298 REMARK 465 GLN B 299 REMARK 465 SER B 300 REMARK 465 ALA B 301 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 356 O HOH B 357 2.08 REMARK 500 O HOH B 464 O HOH B 556 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 153 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 153 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 79 61.06 60.20 REMARK 500 TYR A 98 -80.52 -104.63 REMARK 500 SER A 145 -123.32 60.15 REMARK 500 ASP B 30 -73.32 -67.15 REMARK 500 ASN B 32 42.22 -143.83 REMARK 500 TYR B 98 -78.13 -104.63 REMARK 500 SER B 145 -121.96 60.56 REMARK 500 ASN B 170 48.62 39.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 310 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC60195 RELATED DB: TARGETDB DBREF 3D0K A 1 301 UNP Q7W3B7 Q7W3B7_BORPA 1 301 DBREF 3D0K B 1 301 UNP Q7W3B7 Q7W3B7_BORPA 1 301 SEQADV 3D0K SER A -2 UNP Q7W3B7 EXPRESSION TAG SEQADV 3D0K ASN A -1 UNP Q7W3B7 EXPRESSION TAG SEQADV 3D0K ALA A 0 UNP Q7W3B7 EXPRESSION TAG SEQADV 3D0K SER B -2 UNP Q7W3B7 EXPRESSION TAG SEQADV 3D0K ASN B -1 UNP Q7W3B7 EXPRESSION TAG SEQADV 3D0K ALA B 0 UNP Q7W3B7 EXPRESSION TAG SEQRES 1 A 304 SER ASN ALA MSE LYS PRO ALA ASP LEU THR ASN ALA ASP SEQRES 2 A 304 ARG ILE ALA LEU GLU LEU GLY HIS ALA GLY ARG ASN ALA SEQRES 3 A 304 ILE PRO TYR LEU ASP ASP ASP ARG ASN ALA ASP ARG PRO SEQRES 4 A 304 PHE THR LEU ASN THR TYR ARG PRO TYR GLY TYR THR PRO SEQRES 5 A 304 ASP ARG PRO VAL VAL VAL VAL GLN HIS GLY VAL LEU ARG SEQRES 6 A 304 ASN GLY ALA ASP TYR ARG ASP PHE TRP ILE PRO ALA ALA SEQRES 7 A 304 ASP ARG HIS LYS LEU LEU ILE VAL ALA PRO THR PHE SER SEQRES 8 A 304 ASP GLU ILE TRP PRO GLY VAL GLU SER TYR ASN ASN GLY SEQRES 9 A 304 ARG ALA PHE THR ALA ALA GLY ASN PRO ARG HIS VAL ASP SEQRES 10 A 304 GLY TRP THR TYR ALA LEU VAL ALA ARG VAL LEU ALA ASN SEQRES 11 A 304 ILE ARG ALA ALA GLU ILE ALA ASP CYS GLU GLN VAL TYR SEQRES 12 A 304 LEU PHE GLY HIS SER ALA GLY GLY GLN PHE VAL HIS ARG SEQRES 13 A 304 LEU MSE SER SER GLN PRO HIS ALA PRO PHE HIS ALA VAL SEQRES 14 A 304 THR ALA ALA ASN PRO GLY TRP TYR THR LEU PRO THR PHE SEQRES 15 A 304 GLU HIS ARG PHE PRO GLU GLY LEU ASP GLY VAL GLY LEU SEQRES 16 A 304 THR GLU ASP HIS LEU ALA ARG LEU LEU ALA TYR PRO MSE SEQRES 17 A 304 THR ILE LEU ALA GLY ASP GLN ASP ILE ALA THR ASP ASP SEQRES 18 A 304 PRO ASN LEU PRO SER GLU PRO ALA ALA LEU ARG GLN GLY SEQRES 19 A 304 PRO HIS ARG TYR ALA ARG ALA ARG HIS TYR TYR GLU ALA SEQRES 20 A 304 GLY GLN ARG ALA ALA ALA GLN ARG GLY LEU PRO PHE GLY SEQRES 21 A 304 TRP GLN LEU GLN VAL VAL PRO GLY ILE GLY HIS ASP GLY SEQRES 22 A 304 GLN ALA MSE SER GLN VAL CYS ALA SER LEU TRP PHE ASP SEQRES 23 A 304 GLY ARG MSE PRO ASP ALA ALA GLU LEU ALA ARG LEU ALA SEQRES 24 A 304 GLY SER GLN SER ALA SEQRES 1 B 304 SER ASN ALA MSE LYS PRO ALA ASP LEU THR ASN ALA ASP SEQRES 2 B 304 ARG ILE ALA LEU GLU LEU GLY HIS ALA GLY ARG ASN ALA SEQRES 3 B 304 ILE PRO TYR LEU ASP ASP ASP ARG ASN ALA ASP ARG PRO SEQRES 4 B 304 PHE THR LEU ASN THR TYR ARG PRO TYR GLY TYR THR PRO SEQRES 5 B 304 ASP ARG PRO VAL VAL VAL VAL GLN HIS GLY VAL LEU ARG SEQRES 6 B 304 ASN GLY ALA ASP TYR ARG ASP PHE TRP ILE PRO ALA ALA SEQRES 7 B 304 ASP ARG HIS LYS LEU LEU ILE VAL ALA PRO THR PHE SER SEQRES 8 B 304 ASP GLU ILE TRP PRO GLY VAL GLU SER TYR ASN ASN GLY SEQRES 9 B 304 ARG ALA PHE THR ALA ALA GLY ASN PRO ARG HIS VAL ASP SEQRES 10 B 304 GLY TRP THR TYR ALA LEU VAL ALA ARG VAL LEU ALA ASN SEQRES 11 B 304 ILE ARG ALA ALA GLU ILE ALA ASP CYS GLU GLN VAL TYR SEQRES 12 B 304 LEU PHE GLY HIS SER ALA GLY GLY GLN PHE VAL HIS ARG SEQRES 13 B 304 LEU MSE SER SER GLN PRO HIS ALA PRO PHE HIS ALA VAL SEQRES 14 B 304 THR ALA ALA ASN PRO GLY TRP TYR THR LEU PRO THR PHE SEQRES 15 B 304 GLU HIS ARG PHE PRO GLU GLY LEU ASP GLY VAL GLY LEU SEQRES 16 B 304 THR GLU ASP HIS LEU ALA ARG LEU LEU ALA TYR PRO MSE SEQRES 17 B 304 THR ILE LEU ALA GLY ASP GLN ASP ILE ALA THR ASP ASP SEQRES 18 B 304 PRO ASN LEU PRO SER GLU PRO ALA ALA LEU ARG GLN GLY SEQRES 19 B 304 PRO HIS ARG TYR ALA ARG ALA ARG HIS TYR TYR GLU ALA SEQRES 20 B 304 GLY GLN ARG ALA ALA ALA GLN ARG GLY LEU PRO PHE GLY SEQRES 21 B 304 TRP GLN LEU GLN VAL VAL PRO GLY ILE GLY HIS ASP GLY SEQRES 22 B 304 GLN ALA MSE SER GLN VAL CYS ALA SER LEU TRP PHE ASP SEQRES 23 B 304 GLY ARG MSE PRO ASP ALA ALA GLU LEU ALA ARG LEU ALA SEQRES 24 B 304 GLY SER GLN SER ALA MODRES 3D0K MSE A 155 MET SELENOMETHIONINE MODRES 3D0K MSE A 205 MET SELENOMETHIONINE MODRES 3D0K MSE A 273 MET SELENOMETHIONINE MODRES 3D0K MSE A 286 MET SELENOMETHIONINE MODRES 3D0K MSE B 155 MET SELENOMETHIONINE MODRES 3D0K MSE B 205 MET SELENOMETHIONINE MODRES 3D0K MSE B 273 MET SELENOMETHIONINE MODRES 3D0K MSE B 286 MET SELENOMETHIONINE HET MSE A 155 8 HET MSE A 205 8 HET MSE A 273 8 HET MSE A 286 8 HET MSE B 155 8 HET MSE B 205 8 HET MSE B 273 8 HET MSE B 286 8 HET CL A 302 1 HET CL A 303 1 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET SO4 A 308 5 HET SO4 A 309 5 HET FMT A 310 3 HET CL B 302 1 HET SO4 B 303 5 HET SO4 B 304 5 HET SO4 B 305 5 HET SO4 B 306 5 HET SO4 B 307 5 HET SO4 B 308 5 HET FMT B 309 3 HET FMT B 310 3 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM FMT FORMIC ACID FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 CL 3(CL 1-) FORMUL 5 SO4 12(O4 S 2-) FORMUL 11 FMT 3(C H2 O2) FORMUL 21 HOH *439(H2 O) HELIX 1 1 THR A 7 LEU A 16 1 10 HELIX 2 2 ASN A 63 TRP A 71 1 9 HELIX 3 3 TRP A 71 LYS A 79 1 9 HELIX 4 4 PRO A 93 TYR A 98 1 6 HELIX 5 5 HIS A 112 TYR A 118 5 7 HELIX 6 6 ALA A 119 ALA A 131 1 13 HELIX 7 7 SER A 145 GLN A 158 1 14 HELIX 8 8 THR A 193 TYR A 203 1 11 HELIX 9 9 GLU A 224 ARG A 229 1 6 HELIX 10 10 HIS A 233 ARG A 252 1 20 HELIX 11 11 ASP A 269 ASP A 283 1 15 HELIX 12 12 ASP A 288 ALA A 296 1 9 HELIX 13 13 LYS B 2 LEU B 6 5 5 HELIX 14 14 THR B 7 LEU B 16 1 10 HELIX 15 15 ASN B 63 TRP B 71 1 9 HELIX 16 16 TRP B 71 LYS B 79 1 9 HELIX 17 17 PRO B 93 TYR B 98 1 6 HELIX 18 18 HIS B 112 TYR B 118 5 7 HELIX 19 19 ALA B 119 ALA B 131 1 13 HELIX 20 20 SER B 145 GLN B 158 1 14 HELIX 21 21 THR B 193 TYR B 203 1 11 HELIX 22 22 GLU B 224 ARG B 229 1 6 HELIX 23 23 HIS B 233 ARG B 252 1 20 HELIX 24 24 ASP B 269 ASP B 283 1 15 HELIX 25 25 ASP B 288 ALA B 296 1 9 SHEET 1 A 8 GLY A 20 TYR A 26 0 SHEET 2 A 8 PHE A 37 ARG A 43 -1 O PHE A 37 N TYR A 26 SHEET 3 A 8 LEU A 81 THR A 86 -1 O THR A 86 N THR A 38 SHEET 4 A 8 VAL A 53 GLN A 57 1 N VAL A 54 O LEU A 81 SHEET 5 A 8 VAL A 139 HIS A 144 1 O TYR A 140 N VAL A 55 SHEET 6 A 8 ALA A 165 ALA A 169 1 O ALA A 169 N GLY A 143 SHEET 7 A 8 THR A 206 GLY A 210 1 O LEU A 208 N ALA A 168 SHEET 8 A 8 GLN A 259 VAL A 263 1 O GLN A 261 N ILE A 207 SHEET 1 B 8 GLY B 20 TYR B 26 0 SHEET 2 B 8 PHE B 37 ARG B 43 -1 O ARG B 43 N GLY B 20 SHEET 3 B 8 LEU B 81 THR B 86 -1 O THR B 86 N THR B 38 SHEET 4 B 8 VAL B 53 GLN B 57 1 N VAL B 54 O LEU B 81 SHEET 5 B 8 VAL B 139 HIS B 144 1 O TYR B 140 N VAL B 55 SHEET 6 B 8 ALA B 165 ALA B 169 1 O ALA B 169 N GLY B 143 SHEET 7 B 8 THR B 206 GLY B 210 1 O LEU B 208 N ALA B 168 SHEET 8 B 8 GLN B 259 VAL B 263 1 O GLN B 259 N ILE B 207 LINK C LEU A 154 N MSE A 155 1555 1555 1.32 LINK C MSE A 155 N SER A 156 1555 1555 1.34 LINK C PRO A 204 N MSE A 205 1555 1555 1.32 LINK C MSE A 205 N THR A 206 1555 1555 1.35 LINK C ALA A 272 N MSE A 273 1555 1555 1.34 LINK C MSE A 273 N SER A 274 1555 1555 1.33 LINK C ARG A 285 N MSE A 286 1555 1555 1.32 LINK C MSE A 286 N PRO A 287 1555 1555 1.35 LINK C LEU B 154 N MSE B 155 1555 1555 1.34 LINK C MSE B 155 N SER B 156 1555 1555 1.35 LINK C PRO B 204 N MSE B 205 1555 1555 1.32 LINK C MSE B 205 N THR B 206 1555 1555 1.34 LINK C ALA B 272 N MSE B 273 1555 1555 1.33 LINK C MSE B 273 N SER B 274 1555 1555 1.34 LINK C ARG B 285 N MSE B 286 1555 1555 1.33 LINK C MSE B 286 N PRO B 287 1555 1555 1.35 CISPEP 1 PHE A 183 PRO A 184 0 7.84 CISPEP 2 PHE B 183 PRO B 184 0 2.37 SITE 1 AC1 1 ARG B 111 SITE 1 AC2 6 SER A 145 ALA A 146 GLN A 149 GLY A 172 SITE 2 AC2 6 PRO A 222 ARG A 234 SITE 1 AC3 7 SER B 145 ALA B 146 GLN B 149 GLY B 172 SITE 2 AC3 7 ASN B 220 PRO B 222 ARG B 234 SITE 1 AC4 5 GLY B 59 TYR B 67 HIS B 144 SER B 145 SITE 2 AC4 5 HIS B 268 SITE 1 AC5 3 THR A 105 ALA A 107 ASN A 109 SITE 1 AC6 2 TYR B 45 GLY B 46 SITE 1 AC7 5 GLY A 59 TYR A 67 HIS A 144 SER A 145 SITE 2 AC7 5 HIS A 268 SITE 1 AC8 4 ARG A 21 SER B 88 ASP B 89 GLU B 90 SITE 1 AC9 3 ASP B 188 GLY B 189 GLY B 191 SITE 1 BC1 4 GLY B 94 GLU B 96 ARG B 285 ASP B 288 SITE 1 BC2 3 HIS A 18 ALA A 19 TYR A 45 SITE 1 BC3 3 GLY A 94 GLU A 96 ARG A 285 SITE 1 BC4 2 ASP A 288 ALA A 289 SITE 1 BC5 4 ASN A 63 GLY A 64 ALA A 65 ASP A 66 SITE 1 BC6 4 ASN B 63 GLY B 64 ALA B 65 ASP B 66 SITE 1 BC7 3 ALA B 33 ASP B 34 ARG B 35 CRYST1 41.879 83.710 90.792 90.00 92.68 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023878 0.000000 0.001119 0.00000 SCALE2 0.000000 0.011946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011026 0.00000