HEADER OXIDOREDUCTASE 05-MAY-08 3D1C TITLE CRYSTAL STRUCTURE OF FLAVIN-CONTAINING PUTATIVE MONOOXYGENASE TITLE 2 (NP_373108.1) FROM STAPHYLOCOCCUS AUREUS MU50 AT 2.40 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVIN-CONTAINING PUTATIVE MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 158878; SOURCE 4 STRAIN: MU50; SOURCE 5 GENE: NP_373108.1, SAV2584; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_373108.1, FLAVIN-CONTAINING PUTATIVE MONOOXYGENASE, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, OXIDOREDUCTASE, PYRIDINE NUCLEOTIDE- KEYWDS 4 DISULPHIDE OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 01-FEB-23 3D1C 1 REMARK SEQADV REVDAT 7 24-JUL-19 3D1C 1 REMARK LINK REVDAT 6 25-OCT-17 3D1C 1 REMARK REVDAT 5 23-DEC-15 3D1C 1 JRNL REVDAT 4 20-AUG-14 3D1C 1 JRNL REVDAT 3 13-JUL-11 3D1C 1 VERSN REVDAT 2 24-FEB-09 3D1C 1 VERSN REVDAT 1 20-MAY-08 3D1C 0 JRNL AUTH W.C.HWANG,Q.XU,B.WU,A.GODZIK JRNL TITL CRYSTAL STRUCTURE OF A BAEYER-VILLIGER FLAVIN-CONTAINING JRNL TITL 2 MONOOXYGENASE FROM STAPHYLOCOCCUS AUREUS MRSA STRAIN MU50. JRNL REF PROTEINS 2014 JRNL REFN ESSN 1097-0134 JRNL PMID 25092800 JRNL DOI 10.1002/PROT.24661 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1087 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1420 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2773 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 49.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.52000 REMARK 3 B22 (A**2) : -1.52000 REMARK 3 B33 (A**2) : 3.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.266 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.212 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.148 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.376 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2916 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1814 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3983 ; 1.509 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4437 ; 0.934 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 356 ; 4.820 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;34.267 ;24.741 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 424 ;14.121 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ; 7.972 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 438 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3262 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 593 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 537 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1781 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1405 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1434 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 138 ; 0.211 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.147 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.236 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.204 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1838 ; 2.085 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 726 ; 0.421 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2862 ; 3.351 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1287 ; 4.959 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1121 ; 6.369 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 368 REMARK 3 RESIDUE RANGE : A 500 A 500 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2065 28.2679 25.7464 REMARK 3 T TENSOR REMARK 3 T11: -0.0850 T22: -0.1121 REMARK 3 T33: -0.0777 T12: -0.0025 REMARK 3 T13: 0.0022 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.7248 L22: 2.6499 REMARK 3 L33: 1.1768 L12: 0.4477 REMARK 3 L13: -0.2669 L23: 0.1441 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: 0.1261 S13: 0.0451 REMARK 3 S21: -0.2706 S22: 0.0548 S23: 0.0213 REMARK 3 S31: 0.0216 S32: -0.1469 S33: -0.0568 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. FAD IS MODELED BASED ON DENSITY AND STRUCTURAL REMARK 3 HOMOLOGY. SO4 IS PRESENT IN CRYSTALLIZATION CONDITION. REMARK 3 AN UNKNOWN LIGAND (UNL) WAS MODELLED AT THE PUTATIVE REMARK 3 ACTIVE SITE BASED ON A STRUCTURAL HOMOLOG (PDB 2GVC). REMARK 3 5. DENSITY FOR THE FOLLOWING REGIONS ARE POOR: A62,A118, REMARK 4 REMARK 4 3D1C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047467. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920,0.91837 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21169 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 28.892 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.68200 REMARK 200 R SYM FOR SHELL (I) : 0.68200 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6000M (NH4)2SO4, 0.1M MES PH 6.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.53050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.62350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.62350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.29575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.62350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.62350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.76525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.62350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.62350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.29575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.62350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.62350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.76525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.53050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR STATE THAT ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION REMARK 300 STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -178.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.06100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 372 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 THR A 197 REMARK 465 THR A 198 REMARK 465 GLY A 199 REMARK 465 LEU A 200 REMARK 465 ASN A 201 REMARK 465 ASP A 202 REMARK 465 PRO A 203 REMARK 465 ASP A 204 REMARK 465 ALA A 205 REMARK 465 ASP A 206 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 ASN A 187 CG OD1 ND2 REMARK 470 SER A 196 OG REMARK 470 ARG A 210 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 228 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 244 CG OD1 ND2 REMARK 470 SER A 253 OG REMARK 470 GLN A 255 CG CD OE1 NE2 REMARK 470 THR A 284 OG1 CG2 REMARK 470 GLN A 286 CG CD OE1 NE2 REMARK 470 LYS A 289 CD CE NZ REMARK 470 GLU A 310 CG CD OE1 OE2 REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 LYS A 351 CD CE NZ REMARK 470 GLN A 353 CG CD OE1 NE2 REMARK 470 SER A 360 OG REMARK 470 CYS A 362 SG REMARK 470 GLU A 363 CG CD OE1 OE2 REMARK 470 VAL A 364 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 11 54.30 -113.98 REMARK 500 PHE A 61 51.74 -96.25 REMARK 500 ASP A 65 123.26 -28.00 REMARK 500 SER A 74 113.19 -167.11 REMARK 500 TYR A 119 -179.30 -170.35 REMARK 500 THR A 126 -76.22 -109.79 REMARK 500 ASP A 140 11.84 -154.40 REMARK 500 ALA A 266 61.87 -101.06 REMARK 500 ASN A 285 67.74 -156.37 REMARK 500 ALA A 314 136.38 164.39 REMARK 500 LEU A 316 29.97 44.41 REMARK 500 GLU A 363 86.56 -54.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 372 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 382610 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3D1C A 1 368 UNP Q99R54 Q99R54_STAAM 1 368 SEQADV 3D1C GLY A 0 UNP Q99R54 EXPRESSION TAG SEQRES 1 A 369 GLY MSE GLN HIS HIS LYS VAL ALA ILE ILE GLY ALA GLY SEQRES 2 A 369 ALA ALA GLY ILE GLY MSE ALA ILE THR LEU LYS ASP PHE SEQRES 3 A 369 GLY ILE THR ASP VAL ILE ILE LEU GLU LYS GLY THR VAL SEQRES 4 A 369 GLY HIS SER PHE LYS HIS TRP PRO LYS SER THR ARG THR SEQRES 5 A 369 ILE THR PRO SER PHE THR SER ASN GLY PHE GLY MSE PRO SEQRES 6 A 369 ASP MSE ASN ALA ILE SER MSE ASP THR SER PRO ALA PHE SEQRES 7 A 369 THR PHE ASN GLU GLU HIS ILE SER GLY GLU THR TYR ALA SEQRES 8 A 369 GLU TYR LEU GLN VAL VAL ALA ASN HIS TYR GLU LEU ASN SEQRES 9 A 369 ILE PHE GLU ASN THR VAL VAL THR ASN ILE SER ALA ASP SEQRES 10 A 369 ASP ALA TYR TYR THR ILE ALA THR THR THR GLU THR TYR SEQRES 11 A 369 HIS ALA ASP TYR ILE PHE VAL ALA THR GLY ASP TYR ASN SEQRES 12 A 369 PHE PRO LYS LYS PRO PHE LYS TYR GLY ILE HIS TYR SER SEQRES 13 A 369 GLU ILE GLU ASP PHE ASP ASN PHE ASN LYS GLY GLN TYR SEQRES 14 A 369 VAL VAL ILE GLY GLY ASN GLU SER GLY PHE ASP ALA ALA SEQRES 15 A 369 TYR GLN LEU ALA LYS ASN GLY SER ASP ILE ALA LEU TYR SEQRES 16 A 369 THR SER THR THR GLY LEU ASN ASP PRO ASP ALA ASP PRO SEQRES 17 A 369 SER VAL ARG LEU SER PRO TYR THR ARG GLN ARG LEU GLY SEQRES 18 A 369 ASN VAL ILE LYS GLN GLY ALA ARG ILE GLU MSE ASN VAL SEQRES 19 A 369 HIS TYR THR VAL LYS ASP ILE ASP PHE ASN ASN GLY GLN SEQRES 20 A 369 TYR HIS ILE SER PHE ASP SER GLY GLN SER VAL HIS THR SEQRES 21 A 369 PRO HIS GLU PRO ILE LEU ALA THR GLY PHE ASP ALA THR SEQRES 22 A 369 LYS ASN PRO ILE VAL GLN GLN LEU PHE VAL THR THR ASN SEQRES 23 A 369 GLN ASP ILE LYS LEU THR THR HIS ASP GLU SER THR ARG SEQRES 24 A 369 TYR PRO ASN ILE PHE MSE ILE GLY ALA THR VAL GLU ASN SEQRES 25 A 369 ASP ASN ALA LYS LEU CYS TYR ILE TYR LYS PHE ARG ALA SEQRES 26 A 369 ARG PHE ALA VAL LEU ALA HIS LEU LEU THR GLN ARG GLU SEQRES 27 A 369 GLY LEU PRO ALA LYS GLN GLU VAL ILE GLU ASN TYR GLN SEQRES 28 A 369 LYS ASN GLN MSE TYR LEU ASP ASP TYR SER CYS CYS GLU SEQRES 29 A 369 VAL SER CYS THR CYS MODRES 3D1C MSE A 1 MET SELENOMETHIONINE MODRES 3D1C MSE A 18 MET SELENOMETHIONINE MODRES 3D1C MSE A 63 MET SELENOMETHIONINE MODRES 3D1C MSE A 66 MET SELENOMETHIONINE MODRES 3D1C MSE A 71 MET SELENOMETHIONINE MODRES 3D1C MSE A 231 MET SELENOMETHIONINE MODRES 3D1C MSE A 304 MET SELENOMETHIONINE MODRES 3D1C MSE A 354 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 18 8 HET MSE A 63 8 HET MSE A 66 8 HET MSE A 71 8 HET MSE A 231 8 HET MSE A 304 8 HET MSE A 354 8 HET SO4 A 369 5 HET SO4 A 370 5 HET SO4 A 371 5 HET SO4 A 372 5 HET FAD A 500 53 HET UNL A 501 11 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM UNL UNKNOWN LIGAND FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 FAD C27 H33 N9 O15 P2 FORMUL 8 HOH *115(H2 O) HELIX 1 1 GLY A 12 PHE A 25 1 14 HELIX 2 2 GLY A 39 HIS A 44 1 6 HELIX 3 3 SER A 58 GLY A 62 5 5 HELIX 4 4 SER A 74 ASN A 80 1 7 HELIX 5 5 SER A 85 TYR A 100 1 16 HELIX 6 6 SER A 155 ILE A 157 5 3 HELIX 7 7 ASP A 159 PHE A 163 5 5 HELIX 8 8 ASN A 174 ASN A 187 1 14 HELIX 9 9 SER A 212 GLN A 225 1 14 HELIX 10 10 ASP A 270 LYS A 273 5 4 HELIX 11 11 ASN A 274 PHE A 281 1 8 HELIX 12 12 TYR A 318 ARG A 323 1 6 HELIX 13 13 ARG A 325 GLU A 337 1 13 HELIX 14 14 LYS A 342 ASN A 352 1 11 HELIX 15 15 ASP A 358 CYS A 362 5 5 SHEET 1 A 6 ASN A 103 PHE A 105 0 SHEET 2 A 6 VAL A 30 LEU A 33 1 N ILE A 32 O PHE A 105 SHEET 3 A 6 HIS A 3 ILE A 9 1 N ILE A 8 O LEU A 33 SHEET 4 A 6 TYR A 129 VAL A 136 1 O PHE A 135 N ILE A 9 SHEET 5 A 6 TYR A 120 THR A 124 -1 N ILE A 122 O TYR A 129 SHEET 6 A 6 VAL A 110 ALA A 115 -1 N ASN A 112 O ALA A 123 SHEET 1 B 5 ASN A 103 PHE A 105 0 SHEET 2 B 5 VAL A 30 LEU A 33 1 N ILE A 32 O PHE A 105 SHEET 3 B 5 HIS A 3 ILE A 9 1 N ILE A 8 O LEU A 33 SHEET 4 B 5 TYR A 129 VAL A 136 1 O PHE A 135 N ILE A 9 SHEET 5 B 5 ILE A 302 MSE A 304 1 O PHE A 303 N VAL A 136 SHEET 1 C 5 ILE A 152 HIS A 153 0 SHEET 2 C 5 ILE A 264 LEU A 265 1 O LEU A 265 N ILE A 152 SHEET 3 C 5 GLN A 167 ILE A 171 1 N ILE A 171 O ILE A 264 SHEET 4 C 5 ASP A 190 TYR A 194 1 O ALA A 192 N VAL A 170 SHEET 5 C 5 ILE A 229 ASN A 232 1 O ASN A 232 N LEU A 193 SHEET 1 D 3 VAL A 237 ASN A 243 0 SHEET 2 D 3 GLN A 246 PHE A 251 -1 O SER A 250 N LYS A 238 SHEET 3 D 3 VAL A 257 THR A 259 -1 O VAL A 257 N ILE A 249 LINK C MSE A 1 N GLN A 2 1555 1555 1.33 LINK C GLY A 17 N MSE A 18 1555 1555 1.34 LINK C MSE A 18 N ALA A 19 1555 1555 1.33 LINK C GLY A 62 N MSE A 63 1555 1555 1.34 LINK C MSE A 63 N PRO A 64 1555 1555 1.34 LINK C ASP A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N ASN A 67 1555 1555 1.33 LINK C SER A 70 N MSE A 71 1555 1555 1.32 LINK C MSE A 71 N ASP A 72 1555 1555 1.32 LINK C GLU A 230 N MSE A 231 1555 1555 1.33 LINK C MSE A 231 N ASN A 232 1555 1555 1.33 LINK C PHE A 303 N MSE A 304 1555 1555 1.32 LINK C MSE A 304 N ILE A 305 1555 1555 1.33 LINK C GLN A 353 N MSE A 354 1555 1555 1.33 LINK C MSE A 354 N TYR A 355 1555 1555 1.33 SITE 1 AC1 4 GLY A 36 THR A 37 HIS A 40 HIS A 44 SITE 1 AC2 5 GLU A 156 ILE A 157 GLU A 158 ASP A 159 SITE 2 AC2 5 ASN A 162 SITE 1 AC3 4 GLN A 2 HIS A 4 GLU A 127 TYR A 129 SITE 1 AC4 3 GLY A 166 GLN A 167 HIS A 261 SITE 1 AC5 34 GLY A 10 GLY A 12 ALA A 13 ALA A 14 SITE 2 AC5 34 LEU A 33 GLU A 34 LYS A 35 HIS A 40 SITE 3 AC5 34 SER A 41 PHE A 42 TRP A 45 THR A 51 SITE 4 AC5 34 ILE A 52 THR A 53 THR A 108 ALA A 137 SITE 5 AC5 34 THR A 138 TYR A 141 GLY A 306 ALA A 307 SITE 6 AC5 34 CYS A 317 TYR A 318 ILE A 319 HOH A 503 SITE 7 AC5 34 HOH A 508 HOH A 510 HOH A 511 HOH A 514 SITE 8 AC5 34 HOH A 517 HOH A 531 HOH A 539 HOH A 543 SITE 9 AC5 34 HOH A 568 HOH A 609 SITE 1 AC6 12 ILE A 52 ASN A 174 GLU A 175 SER A 176 SITE 2 AC6 12 PHE A 269 CYS A 317 TYR A 318 HOH A 557 SITE 3 AC6 12 HOH A 577 HOH A 581 HOH A 592 HOH A 609 CRYST1 109.247 109.247 87.061 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009154 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011486 0.00000 HETATM 1 N MSE A 1 41.606 0.820 14.714 1.00 58.51 N HETATM 2 CA MSE A 1 40.926 -0.511 14.613 1.00 62.94 C HETATM 3 C MSE A 1 39.775 -0.714 15.601 1.00 57.02 C HETATM 4 O MSE A 1 38.682 -1.078 15.188 1.00 56.37 O HETATM 5 CB MSE A 1 41.923 -1.666 14.762 1.00 61.09 C HETATM 6 CG MSE A 1 42.807 -1.878 13.540 1.00 68.77 C HETATM 7 SE MSE A 1 43.525 -3.732 13.353 0.75 82.27 SE HETATM 8 CE MSE A 1 44.178 -4.066 15.307 1.00 85.27 C