data_3D1U # _entry.id 3D1U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3D1U RCSB RCSB047485 WWPDB D_1000047485 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2008-11-25 _pdbx_database_PDB_obs_spr.pdb_id 3F7W _pdbx_database_PDB_obs_spr.replace_pdb_id 3D1U _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 387095 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3D1U _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-05-06 _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of putative fructosamine-3-kinase (YP_290396.1) from THERMOBIFIDA FUSCA YX-ER1 at 1.85 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 # _cell.entry_id 3D1U _cell.length_a 91.178 _cell.length_b 91.178 _cell.length_c 82.049 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3D1U _symmetry.Int_Tables_number 96 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'putative fructosamine-3-kinase' 31804.209 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 5 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 6 water nat water 18.015 323 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GVNSVAARVTELTGREVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVA GWDDRTLA(MSE)EWVDERPPTPEAAERFGHQLAA(MSE)HLAGAESFGATWDGYIGPLP(MSE)DNTPRSTWPEFYAEQ RILPYLRRAADRGALTPGDVRLVEKVLDALDHLAGDPEPPARIHGDLWNGNVLWQDDGAVVIDPAAHGGHREADLA (MSE)LALFGLPYLDRVRDAYNEVAPLAEGWRARIPLHQLHPLLVHVCLFGAAYRTTLVDTARAALRA ; _entity_poly.pdbx_seq_one_letter_code_can ;GVNSVAARVTELTGREVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVA GWDDRTLAMEWVDERPPTPEAAERFGHQLAAMHLAGAESFGATWDGYIGPLPMDNTPRSTWPEFYAEQRILPYLRRAADR GALTPGDVRLVEKVLDALDHLAGDPEPPARIHGDLWNGNVLWQDDGAVVIDPAAHGGHREADLAMLALFGLPYLDRVRDA YNEVAPLAEGWRARIPLHQLHPLLVHVCLFGAAYRTTLVDTARAALRA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 387095 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 VAL n 1 3 ASN n 1 4 SER n 1 5 VAL n 1 6 ALA n 1 7 ALA n 1 8 ARG n 1 9 VAL n 1 10 THR n 1 11 GLU n 1 12 LEU n 1 13 THR n 1 14 GLY n 1 15 ARG n 1 16 GLU n 1 17 VAL n 1 18 ALA n 1 19 ALA n 1 20 VAL n 1 21 ALA n 1 22 GLU n 1 23 ARG n 1 24 GLY n 1 25 HIS n 1 26 SER n 1 27 HIS n 1 28 ARG n 1 29 TRP n 1 30 HIS n 1 31 LEU n 1 32 TYR n 1 33 ARG n 1 34 VAL n 1 35 GLU n 1 36 LEU n 1 37 ALA n 1 38 ASP n 1 39 GLY n 1 40 THR n 1 41 PRO n 1 42 LEU n 1 43 PHE n 1 44 VAL n 1 45 LYS n 1 46 ALA n 1 47 LEU n 1 48 PRO n 1 49 ASP n 1 50 ASP n 1 51 ALA n 1 52 PRO n 1 53 ALA n 1 54 LEU n 1 55 ASP n 1 56 GLY n 1 57 LEU n 1 58 PHE n 1 59 ARG n 1 60 ALA n 1 61 GLU n 1 62 ALA n 1 63 LEU n 1 64 GLY n 1 65 LEU n 1 66 ASP n 1 67 TRP n 1 68 LEU n 1 69 GLY n 1 70 ARG n 1 71 SER n 1 72 PHE n 1 73 GLY n 1 74 SER n 1 75 PRO n 1 76 VAL n 1 77 PRO n 1 78 GLN n 1 79 VAL n 1 80 ALA n 1 81 GLY n 1 82 TRP n 1 83 ASP n 1 84 ASP n 1 85 ARG n 1 86 THR n 1 87 LEU n 1 88 ALA n 1 89 MSE n 1 90 GLU n 1 91 TRP n 1 92 VAL n 1 93 ASP n 1 94 GLU n 1 95 ARG n 1 96 PRO n 1 97 PRO n 1 98 THR n 1 99 PRO n 1 100 GLU n 1 101 ALA n 1 102 ALA n 1 103 GLU n 1 104 ARG n 1 105 PHE n 1 106 GLY n 1 107 HIS n 1 108 GLN n 1 109 LEU n 1 110 ALA n 1 111 ALA n 1 112 MSE n 1 113 HIS n 1 114 LEU n 1 115 ALA n 1 116 GLY n 1 117 ALA n 1 118 GLU n 1 119 SER n 1 120 PHE n 1 121 GLY n 1 122 ALA n 1 123 THR n 1 124 TRP n 1 125 ASP n 1 126 GLY n 1 127 TYR n 1 128 ILE n 1 129 GLY n 1 130 PRO n 1 131 LEU n 1 132 PRO n 1 133 MSE n 1 134 ASP n 1 135 ASN n 1 136 THR n 1 137 PRO n 1 138 ARG n 1 139 SER n 1 140 THR n 1 141 TRP n 1 142 PRO n 1 143 GLU n 1 144 PHE n 1 145 TYR n 1 146 ALA n 1 147 GLU n 1 148 GLN n 1 149 ARG n 1 150 ILE n 1 151 LEU n 1 152 PRO n 1 153 TYR n 1 154 LEU n 1 155 ARG n 1 156 ARG n 1 157 ALA n 1 158 ALA n 1 159 ASP n 1 160 ARG n 1 161 GLY n 1 162 ALA n 1 163 LEU n 1 164 THR n 1 165 PRO n 1 166 GLY n 1 167 ASP n 1 168 VAL n 1 169 ARG n 1 170 LEU n 1 171 VAL n 1 172 GLU n 1 173 LYS n 1 174 VAL n 1 175 LEU n 1 176 ASP n 1 177 ALA n 1 178 LEU n 1 179 ASP n 1 180 HIS n 1 181 LEU n 1 182 ALA n 1 183 GLY n 1 184 ASP n 1 185 PRO n 1 186 GLU n 1 187 PRO n 1 188 PRO n 1 189 ALA n 1 190 ARG n 1 191 ILE n 1 192 HIS n 1 193 GLY n 1 194 ASP n 1 195 LEU n 1 196 TRP n 1 197 ASN n 1 198 GLY n 1 199 ASN n 1 200 VAL n 1 201 LEU n 1 202 TRP n 1 203 GLN n 1 204 ASP n 1 205 ASP n 1 206 GLY n 1 207 ALA n 1 208 VAL n 1 209 VAL n 1 210 ILE n 1 211 ASP n 1 212 PRO n 1 213 ALA n 1 214 ALA n 1 215 HIS n 1 216 GLY n 1 217 GLY n 1 218 HIS n 1 219 ARG n 1 220 GLU n 1 221 ALA n 1 222 ASP n 1 223 LEU n 1 224 ALA n 1 225 MSE n 1 226 LEU n 1 227 ALA n 1 228 LEU n 1 229 PHE n 1 230 GLY n 1 231 LEU n 1 232 PRO n 1 233 TYR n 1 234 LEU n 1 235 ASP n 1 236 ARG n 1 237 VAL n 1 238 ARG n 1 239 ASP n 1 240 ALA n 1 241 TYR n 1 242 ASN n 1 243 GLU n 1 244 VAL n 1 245 ALA n 1 246 PRO n 1 247 LEU n 1 248 ALA n 1 249 GLU n 1 250 GLY n 1 251 TRP n 1 252 ARG n 1 253 ALA n 1 254 ARG n 1 255 ILE n 1 256 PRO n 1 257 LEU n 1 258 HIS n 1 259 GLN n 1 260 LEU n 1 261 HIS n 1 262 PRO n 1 263 LEU n 1 264 LEU n 1 265 VAL n 1 266 HIS n 1 267 VAL n 1 268 CYS n 1 269 LEU n 1 270 PHE n 1 271 GLY n 1 272 ALA n 1 273 ALA n 1 274 TYR n 1 275 ARG n 1 276 THR n 1 277 THR n 1 278 LEU n 1 279 VAL n 1 280 ASP n 1 281 THR n 1 282 ALA n 1 283 ARG n 1 284 ALA n 1 285 ALA n 1 286 LEU n 1 287 ARG n 1 288 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'YP_290396.1, Tfu_2340' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain YX _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermobifida fusca' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 269800 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q47ME9_THEFY _struct_ref.pdbx_db_accession Q47ME9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NSVAARVTELTGREVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW DDRTLAMEWVDERPPTPEAAERFGHQLAAMHLAGAESFGATWDGYIGPLPMDNTPRSTWPEFYAEQRILPYLRRAADRGA LTPGDVRLVEKVLDALDHLAGDPEPPARIHGDLWNGNVLWQDDGAVVIDPAAHGGHREADLAMLALFGLPYLDRVRDAYN EVAPLAEGWRARIPLHQLHPLLVHVCLFGAAYRTTLVDTARAALRA ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3D1U _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 288 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q47ME9 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 287 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 287 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3D1U GLY A 1 ? UNP Q47ME9 ? ? 'leader sequence' 0 1 1 3D1U VAL A 2 ? UNP Q47ME9 ? ? 'leader sequence' 1 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3D1U # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 54.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 9.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '1.0000M LiCl, 10.0000% PEG-6000, 0.1M Bicine pH 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.details '1m long Rh coated bent cylindrical mirror forhorizontal and vertical focussing' _diffrn_detector.pdbx_collection_date 2008-03-23 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double-crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.918381 1.0 2 0.979224 1.0 3 0.978618 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL1-5 _diffrn_source.type 'SSRL BEAMLINE BL1-5' _diffrn_source.pdbx_wavelength_list 0.918381,0.979224,0.978618 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3D1U _reflns.d_resolution_high 1.85 _reflns.d_resolution_low 28.916 _reflns.number_obs 30125 _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_netI_over_sigmaI 7.300 _reflns.pdbx_Rsym_value 0.067 _reflns.pdbx_redundancy 7.000 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 28.54 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.85 1.90 ? 15742 ? 0.683 1.1 0.683 ? 7.20 ? 2199 100.00 ? 1 1.90 1.95 ? 15154 ? 0.537 1.4 0.537 ? 7.20 ? 2118 100.00 ? 2 1.95 2.01 ? 14907 ? 0.418 1.8 0.418 ? 7.20 ? 2078 100.00 ? 3 2.01 2.07 ? 14491 ? 0.310 2.4 0.310 ? 7.20 ? 2019 100.00 ? 4 2.07 2.14 ? 13936 ? 0.220 3.4 0.220 ? 7.10 ? 1955 100.00 ? 5 2.14 2.21 ? 13631 ? 0.166 4.6 0.166 ? 7.20 ? 1905 100.00 ? 6 2.21 2.29 ? 13009 ? 0.147 4.7 0.147 ? 7.10 ? 1833 100.00 ? 7 2.29 2.39 ? 12631 ? 0.118 6.3 0.118 ? 7.10 ? 1782 100.00 ? 8 2.39 2.49 ? 12083 ? 0.107 6.4 0.107 ? 7.10 ? 1705 100.00 ? 9 2.49 2.62 ? 11443 ? 0.092 7.6 0.092 ? 7.00 ? 1629 100.00 ? 10 2.62 2.76 ? 10863 ? 0.080 8.5 0.080 ? 7.00 ? 1551 99.90 ? 11 2.76 2.93 ? 10256 ? 0.068 9.8 0.068 ? 6.90 ? 1479 100.00 ? 12 2.93 3.13 ? 9599 ? 0.062 10.4 0.062 ? 6.90 ? 1390 100.00 ? 13 3.13 3.38 ? 8828 ? 0.058 10.7 0.058 ? 6.80 ? 1298 99.80 ? 14 3.38 3.70 ? 7947 ? 0.051 11.2 0.051 ? 6.60 ? 1209 100.00 ? 15 3.70 4.14 ? 6869 ? 0.047 12.6 0.047 ? 6.20 ? 1101 99.80 ? 16 4.14 4.78 ? 6358 ? 0.043 14.1 0.043 ? 6.60 ? 963 97.90 ? 17 4.78 5.85 ? 5843 ? 0.041 14.7 0.041 ? 6.90 ? 843 100.00 ? 18 5.85 8.27 ? 4515 ? 0.037 16.7 0.037 ? 6.70 ? 674 100.00 ? 19 8.27 28.92 ? 2317 ? 0.029 20.7 0.029 ? 5.90 ? 394 97.00 ? 20 # _refine.entry_id 3D1U _refine.ls_d_res_high 1.850 _refine.ls_d_res_low 28.916 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.810 _refine.ls_number_reflns_obs 30072 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. CL IONS AND PEG6000 FRAGMENT (PEG) FROM CRYSTALLIZATION AND ETHYLENE GLYCOL (EDO) FROM CRYO SOLUTION WERE MODELED. 5. ONE GLYCEROL IS MODELED IN THE ACTIVE SITE BASED ON ELECTRON DENSITY. ; _refine.ls_R_factor_obs 0.166 _refine.ls_R_factor_R_work 0.164 _refine.ls_R_factor_R_free 0.207 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1522 _refine.B_iso_mean 25.239 _refine.aniso_B[1][1] 0.670 _refine.aniso_B[2][2] 0.670 _refine.aniso_B[3][3] -1.340 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.947 _refine.pdbx_overall_ESU_R 0.123 _refine.pdbx_overall_ESU_R_Free 0.121 _refine.overall_SU_ML 0.078 _refine.overall_SU_B 4.797 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2386 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 343 _refine_hist.number_atoms_total 2751 _refine_hist.d_res_high 1.850 _refine_hist.d_res_low 28.916 _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2490 0.016 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1705 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3409 1.595 1.955 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 4091 1.454 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 318 6.771 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 124 30.906 22.258 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 353 13.320 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 30 18.190 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 356 0.090 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2908 0.009 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 553 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1540 1.916 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 614 0.534 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2470 2.950 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 950 4.896 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 939 6.727 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.850 _refine_ls_shell.d_res_low 1.898 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.950 _refine_ls_shell.number_reflns_R_work 2102 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.228 _refine_ls_shell.R_factor_R_free 0.276 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 95 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2197 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3D1U _struct.title 'Crystal structure of putative fructosamine-3-kinase (YP_290396.1) from THERMOBIFIDA FUSCA YX-ER1 at 1.85 A resolution' _struct.pdbx_descriptor 'putative fructosamine-3-kinase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_290396.1, putative fructosamine-3-kinase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, Unknown function, Transferase ; _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.entry_id 3D1U # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 5 ? K N N 6 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUPPORTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 2 ? GLY A 14 ? VAL A 1 GLY A 13 1 ? 13 HELX_P HELX_P2 2 GLY A 56 ? GLY A 69 ? GLY A 55 GLY A 68 1 ? 14 HELX_P HELX_P3 3 THR A 98 ? ALA A 115 ? THR A 97 ALA A 114 1 ? 18 HELX_P HELX_P4 4 THR A 140 ? ILE A 150 ? THR A 139 ILE A 149 1 ? 11 HELX_P HELX_P5 5 ILE A 150 ? ARG A 160 ? ILE A 149 ARG A 159 1 ? 11 HELX_P HELX_P6 6 THR A 164 ? ALA A 177 ? THR A 163 ALA A 176 1 ? 14 HELX_P HELX_P7 7 ALA A 177 ? ALA A 182 ? ALA A 176 ALA A 181 1 ? 6 HELX_P HELX_P8 8 TRP A 196 ? GLY A 198 ? TRP A 195 GLY A 197 5 ? 3 HELX_P HELX_P9 9 HIS A 218 ? GLY A 230 ? HIS A 217 GLY A 229 1 ? 13 HELX_P HELX_P10 10 TYR A 233 ? ALA A 245 ? TYR A 232 ALA A 244 1 ? 13 HELX_P HELX_P11 11 GLY A 250 ? GLY A 271 ? GLY A 249 GLY A 270 1 ? 22 HELX_P HELX_P12 12 TYR A 274 ? ARG A 287 ? TYR A 273 ARG A 286 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 88 C ? ? ? 1_555 A MSE 89 N ? ? A ALA 87 A MSE 88 1_555 ? ? ? ? ? ? ? 1.324 ? covale2 covale ? ? A MSE 89 C ? ? ? 1_555 A GLU 90 N ? ? A MSE 88 A GLU 89 1_555 ? ? ? ? ? ? ? 1.320 ? covale3 covale ? ? A ALA 111 C ? ? ? 1_555 A MSE 112 N ? ? A ALA 110 A MSE 111 1_555 ? ? ? ? ? ? ? 1.321 ? covale4 covale ? ? A MSE 112 C ? ? ? 1_555 A HIS 113 N ? ? A MSE 111 A HIS 112 1_555 ? ? ? ? ? ? ? 1.317 ? covale5 covale ? ? A PRO 132 C ? ? ? 1_555 A MSE 133 N ? ? A PRO 131 A MSE 132 1_555 ? ? ? ? ? ? ? 1.321 ? covale6 covale ? ? A MSE 133 C ? ? ? 1_555 A ASP 134 N ? ? A MSE 132 A ASP 133 1_555 ? ? ? ? ? ? ? 1.327 ? covale7 covale ? ? A ALA 224 C ? ? ? 1_555 A MSE 225 N ? ? A ALA 223 A MSE 224 1_555 ? ? ? ? ? ? ? 1.325 ? covale8 covale ? ? A MSE 225 C ? ? ? 1_555 A LEU 226 N ? ? A MSE 224 A LEU 225 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 17 ? SER A 26 ? VAL A 16 SER A 25 A 2 TRP A 29 ? LEU A 36 ? TRP A 28 LEU A 35 A 3 PRO A 41 ? ALA A 46 ? PRO A 40 ALA A 45 A 4 THR A 86 ? GLU A 90 ? THR A 85 GLU A 89 A 5 VAL A 79 ? ASP A 83 ? VAL A 78 ASP A 82 B 1 GLY A 126 ? ILE A 128 ? GLY A 125 ILE A 127 B 2 LEU A 131 ? MSE A 133 ? LEU A 130 MSE A 132 C 1 ALA A 189 ? ILE A 191 ? ALA A 188 ILE A 190 C 2 HIS A 215 ? GLY A 217 ? HIS A 214 GLY A 216 D 1 VAL A 200 ? GLN A 203 ? VAL A 199 GLN A 202 D 2 GLY A 206 ? VAL A 209 ? GLY A 205 VAL A 208 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 18 ? N ALA A 17 O GLU A 35 ? O GLU A 34 A 2 3 N VAL A 34 ? N VAL A 33 O LEU A 42 ? O LEU A 41 A 3 4 N PHE A 43 ? N PHE A 42 O MSE A 89 ? O MSE A 88 A 4 5 O ALA A 88 ? O ALA A 87 N GLY A 81 ? N GLY A 80 B 1 2 N ILE A 128 ? N ILE A 127 O LEU A 131 ? O LEU A 130 C 1 2 N ALA A 189 ? N ALA A 188 O GLY A 217 ? O GLY A 216 D 1 2 N LEU A 201 ? N LEU A 200 O VAL A 208 ? O VAL A 207 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE CL A 288' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CL A 289' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO A 290' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO A 291' AC5 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO A 292' AC6 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EDO A 293' AC7 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE EDO A 294' AC8 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE PEG A 295' AC9 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A 296' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ARG A 15 ? ARG A 14 . ? 1_555 ? 2 AC1 5 ALA A 37 ? ALA A 36 . ? 1_555 ? 3 AC1 5 ASP A 38 ? ASP A 37 . ? 1_555 ? 4 AC1 5 HOH K . ? HOH A 345 . ? 1_555 ? 5 AC1 5 HOH K . ? HOH A 561 . ? 1_555 ? 6 AC2 2 TYR A 233 ? TYR A 232 . ? 1_555 ? 7 AC2 2 ARG A 236 ? ARG A 235 . ? 1_555 ? 8 AC3 6 ARG A 15 ? ARG A 14 . ? 1_555 ? 9 AC3 6 THR A 40 ? THR A 39 . ? 1_555 ? 10 AC3 6 PHE A 72 ? PHE A 71 . ? 1_555 ? 11 AC3 6 GLY A 73 ? GLY A 72 . ? 1_555 ? 12 AC3 6 HOH K . ? HOH A 368 . ? 1_555 ? 13 AC3 6 HOH K . ? HOH A 558 . ? 1_555 ? 14 AC4 3 TRP A 82 ? TRP A 81 . ? 1_555 ? 15 AC4 3 HOH K . ? HOH A 326 . ? 1_555 ? 16 AC4 3 HOH K . ? HOH A 427 . ? 1_555 ? 17 AC5 6 TRP A 29 ? TRP A 28 . ? 1_555 ? 18 AC5 6 LYS A 45 ? LYS A 44 . ? 1_555 ? 19 AC5 6 LEU A 57 ? LEU A 56 . ? 1_555 ? 20 AC5 6 GLU A 61 ? GLU A 60 . ? 1_555 ? 21 AC5 6 HOH K . ? HOH A 309 . ? 1_555 ? 22 AC5 6 HOH K . ? HOH A 371 . ? 1_555 ? 23 AC6 5 PHE A 72 ? PHE A 71 . ? 1_555 ? 24 AC6 5 GLN A 78 ? GLN A 77 . ? 1_555 ? 25 AC6 5 HOH K . ? HOH A 316 . ? 1_555 ? 26 AC6 5 HOH K . ? HOH A 432 . ? 1_555 ? 27 AC6 5 HOH K . ? HOH A 544 . ? 1_555 ? 28 AC7 9 HIS A 113 ? HIS A 112 . ? 1_555 ? 29 AC7 9 GLY A 116 ? GLY A 115 . ? 1_555 ? 30 AC7 9 GLU A 186 ? GLU A 185 . ? 1_555 ? 31 AC7 9 PRO A 187 ? PRO A 186 . ? 1_555 ? 32 AC7 9 PRO A 188 ? PRO A 187 . ? 1_555 ? 33 AC7 9 ALA A 189 ? ALA A 188 . ? 1_555 ? 34 AC7 9 ARG A 219 ? ARG A 218 . ? 1_555 ? 35 AC7 9 HOH K . ? HOH A 438 . ? 1_555 ? 36 AC7 9 HOH K . ? HOH A 589 . ? 1_555 ? 37 AC8 4 GLY A 126 ? GLY A 125 . ? 1_555 ? 38 AC8 4 ASP A 134 ? ASP A 133 . ? 1_555 ? 39 AC8 4 HOH K . ? HOH A 467 . ? 1_555 ? 40 AC8 4 HOH K . ? HOH A 614 . ? 1_555 ? 41 AC9 5 PHE A 43 ? PHE A 42 . ? 1_555 ? 42 AC9 5 GLU A 90 ? GLU A 89 . ? 1_555 ? 43 AC9 5 TRP A 91 ? TRP A 90 . ? 1_555 ? 44 AC9 5 LEU A 201 ? LEU A 200 . ? 1_555 ? 45 AC9 5 ILE A 210 ? ILE A 209 . ? 1_555 ? # _atom_sites.entry_id 3D1U _atom_sites.fract_transf_matrix[1][1] 0.010968 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010968 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012188 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 VAL 2 1 1 VAL VAL A . n A 1 3 ASN 3 2 2 ASN ASN A . n A 1 4 SER 4 3 3 SER SER A . n A 1 5 VAL 5 4 4 VAL VAL A . n A 1 6 ALA 6 5 5 ALA ALA A . n A 1 7 ALA 7 6 6 ALA ALA A . n A 1 8 ARG 8 7 7 ARG ARG A . n A 1 9 VAL 9 8 8 VAL VAL A . n A 1 10 THR 10 9 9 THR THR A . n A 1 11 GLU 11 10 10 GLU GLU A . n A 1 12 LEU 12 11 11 LEU LEU A . n A 1 13 THR 13 12 12 THR THR A . n A 1 14 GLY 14 13 13 GLY GLY A . n A 1 15 ARG 15 14 14 ARG ARG A . n A 1 16 GLU 16 15 15 GLU GLU A . n A 1 17 VAL 17 16 16 VAL VAL A . n A 1 18 ALA 18 17 17 ALA ALA A . n A 1 19 ALA 19 18 18 ALA ALA A . n A 1 20 VAL 20 19 19 VAL VAL A . n A 1 21 ALA 21 20 20 ALA ALA A . n A 1 22 GLU 22 21 21 GLU GLU A . n A 1 23 ARG 23 22 22 ARG ARG A . n A 1 24 GLY 24 23 23 GLY GLY A . n A 1 25 HIS 25 24 24 HIS HIS A . n A 1 26 SER 26 25 25 SER SER A . n A 1 27 HIS 27 26 26 HIS HIS A . n A 1 28 ARG 28 27 27 ARG ARG A . n A 1 29 TRP 29 28 28 TRP TRP A . n A 1 30 HIS 30 29 29 HIS HIS A . n A 1 31 LEU 31 30 30 LEU LEU A . n A 1 32 TYR 32 31 31 TYR TYR A . n A 1 33 ARG 33 32 32 ARG ARG A . n A 1 34 VAL 34 33 33 VAL VAL A . n A 1 35 GLU 35 34 34 GLU GLU A . n A 1 36 LEU 36 35 35 LEU LEU A . n A 1 37 ALA 37 36 36 ALA ALA A . n A 1 38 ASP 38 37 37 ASP ASP A . n A 1 39 GLY 39 38 38 GLY GLY A . n A 1 40 THR 40 39 39 THR THR A . n A 1 41 PRO 41 40 40 PRO PRO A . n A 1 42 LEU 42 41 41 LEU LEU A . n A 1 43 PHE 43 42 42 PHE PHE A . n A 1 44 VAL 44 43 43 VAL VAL A . n A 1 45 LYS 45 44 44 LYS LYS A . n A 1 46 ALA 46 45 45 ALA ALA A . n A 1 47 LEU 47 46 46 LEU LEU A . n A 1 48 PRO 48 47 47 PRO PRO A . n A 1 49 ASP 49 48 48 ASP ASP A . n A 1 50 ASP 50 49 49 ASP ASP A . n A 1 51 ALA 51 50 50 ALA ALA A . n A 1 52 PRO 52 51 51 PRO PRO A . n A 1 53 ALA 53 52 52 ALA ALA A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 ASP 55 54 54 ASP ASP A . n A 1 56 GLY 56 55 55 GLY GLY A . n A 1 57 LEU 57 56 56 LEU LEU A . n A 1 58 PHE 58 57 57 PHE PHE A . n A 1 59 ARG 59 58 58 ARG ARG A . n A 1 60 ALA 60 59 59 ALA ALA A . n A 1 61 GLU 61 60 60 GLU GLU A . n A 1 62 ALA 62 61 61 ALA ALA A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 GLY 64 63 63 GLY GLY A . n A 1 65 LEU 65 64 64 LEU LEU A . n A 1 66 ASP 66 65 65 ASP ASP A . n A 1 67 TRP 67 66 66 TRP TRP A . n A 1 68 LEU 68 67 67 LEU LEU A . n A 1 69 GLY 69 68 68 GLY GLY A . n A 1 70 ARG 70 69 69 ARG ARG A . n A 1 71 SER 71 70 70 SER SER A . n A 1 72 PHE 72 71 71 PHE PHE A . n A 1 73 GLY 73 72 72 GLY GLY A . n A 1 74 SER 74 73 73 SER SER A . n A 1 75 PRO 75 74 74 PRO PRO A . n A 1 76 VAL 76 75 75 VAL VAL A . n A 1 77 PRO 77 76 76 PRO PRO A . n A 1 78 GLN 78 77 77 GLN GLN A . n A 1 79 VAL 79 78 78 VAL VAL A . n A 1 80 ALA 80 79 79 ALA ALA A . n A 1 81 GLY 81 80 80 GLY GLY A . n A 1 82 TRP 82 81 81 TRP TRP A . n A 1 83 ASP 83 82 82 ASP ASP A . n A 1 84 ASP 84 83 83 ASP ASP A . n A 1 85 ARG 85 84 84 ARG ARG A . n A 1 86 THR 86 85 85 THR THR A . n A 1 87 LEU 87 86 86 LEU LEU A . n A 1 88 ALA 88 87 87 ALA ALA A . n A 1 89 MSE 89 88 88 MSE MSE A . n A 1 90 GLU 90 89 89 GLU GLU A . n A 1 91 TRP 91 90 90 TRP TRP A . n A 1 92 VAL 92 91 91 VAL VAL A . n A 1 93 ASP 93 92 92 ASP ASP A . n A 1 94 GLU 94 93 93 GLU GLU A . n A 1 95 ARG 95 94 94 ARG ARG A . n A 1 96 PRO 96 95 95 PRO PRO A . n A 1 97 PRO 97 96 96 PRO PRO A . n A 1 98 THR 98 97 97 THR THR A . n A 1 99 PRO 99 98 98 PRO PRO A . n A 1 100 GLU 100 99 99 GLU GLU A . n A 1 101 ALA 101 100 100 ALA ALA A . n A 1 102 ALA 102 101 101 ALA ALA A . n A 1 103 GLU 103 102 102 GLU GLU A . n A 1 104 ARG 104 103 103 ARG ARG A . n A 1 105 PHE 105 104 104 PHE PHE A . n A 1 106 GLY 106 105 105 GLY GLY A . n A 1 107 HIS 107 106 106 HIS HIS A . n A 1 108 GLN 108 107 107 GLN GLN A . n A 1 109 LEU 109 108 108 LEU LEU A . n A 1 110 ALA 110 109 109 ALA ALA A . n A 1 111 ALA 111 110 110 ALA ALA A . n A 1 112 MSE 112 111 111 MSE MSE A . n A 1 113 HIS 113 112 112 HIS HIS A . n A 1 114 LEU 114 113 113 LEU LEU A . n A 1 115 ALA 115 114 114 ALA ALA A . n A 1 116 GLY 116 115 115 GLY GLY A . n A 1 117 ALA 117 116 116 ALA ALA A . n A 1 118 GLU 118 117 117 GLU GLU A . n A 1 119 SER 119 118 118 SER SER A . n A 1 120 PHE 120 119 119 PHE PHE A . n A 1 121 GLY 121 120 120 GLY GLY A . n A 1 122 ALA 122 121 121 ALA ALA A . n A 1 123 THR 123 122 122 THR THR A . n A 1 124 TRP 124 123 123 TRP TRP A . n A 1 125 ASP 125 124 124 ASP ASP A . n A 1 126 GLY 126 125 125 GLY GLY A . n A 1 127 TYR 127 126 126 TYR TYR A . n A 1 128 ILE 128 127 127 ILE ILE A . n A 1 129 GLY 129 128 128 GLY GLY A . n A 1 130 PRO 130 129 129 PRO PRO A . n A 1 131 LEU 131 130 130 LEU LEU A . n A 1 132 PRO 132 131 131 PRO PRO A . n A 1 133 MSE 133 132 132 MSE MSE A . n A 1 134 ASP 134 133 133 ASP ASP A . n A 1 135 ASN 135 134 134 ASN ASN A . n A 1 136 THR 136 135 135 THR THR A . n A 1 137 PRO 137 136 136 PRO PRO A . n A 1 138 ARG 138 137 137 ARG ARG A . n A 1 139 SER 139 138 138 SER SER A . n A 1 140 THR 140 139 139 THR THR A . n A 1 141 TRP 141 140 140 TRP TRP A . n A 1 142 PRO 142 141 141 PRO PRO A . n A 1 143 GLU 143 142 142 GLU GLU A . n A 1 144 PHE 144 143 143 PHE PHE A . n A 1 145 TYR 145 144 144 TYR TYR A . n A 1 146 ALA 146 145 145 ALA ALA A . n A 1 147 GLU 147 146 146 GLU GLU A . n A 1 148 GLN 148 147 147 GLN GLN A . n A 1 149 ARG 149 148 148 ARG ARG A . n A 1 150 ILE 150 149 149 ILE ILE A . n A 1 151 LEU 151 150 150 LEU LEU A . n A 1 152 PRO 152 151 151 PRO PRO A . n A 1 153 TYR 153 152 152 TYR TYR A . n A 1 154 LEU 154 153 153 LEU LEU A . n A 1 155 ARG 155 154 154 ARG ARG A . n A 1 156 ARG 156 155 155 ARG ARG A . n A 1 157 ALA 157 156 156 ALA ALA A . n A 1 158 ALA 158 157 157 ALA ALA A . n A 1 159 ASP 159 158 158 ASP ASP A . n A 1 160 ARG 160 159 159 ARG ARG A . n A 1 161 GLY 161 160 160 GLY GLY A . n A 1 162 ALA 162 161 161 ALA ALA A . n A 1 163 LEU 163 162 162 LEU LEU A . n A 1 164 THR 164 163 163 THR THR A . n A 1 165 PRO 165 164 164 PRO PRO A . n A 1 166 GLY 166 165 165 GLY GLY A . n A 1 167 ASP 167 166 166 ASP ASP A . n A 1 168 VAL 168 167 167 VAL VAL A . n A 1 169 ARG 169 168 168 ARG ARG A . n A 1 170 LEU 170 169 169 LEU LEU A . n A 1 171 VAL 171 170 170 VAL VAL A . n A 1 172 GLU 172 171 171 GLU GLU A . n A 1 173 LYS 173 172 172 LYS LYS A . n A 1 174 VAL 174 173 173 VAL VAL A . n A 1 175 LEU 175 174 174 LEU LEU A . n A 1 176 ASP 176 175 175 ASP ASP A . n A 1 177 ALA 177 176 176 ALA ALA A . n A 1 178 LEU 178 177 177 LEU LEU A . n A 1 179 ASP 179 178 178 ASP ASP A . n A 1 180 HIS 180 179 179 HIS HIS A . n A 1 181 LEU 181 180 180 LEU LEU A . n A 1 182 ALA 182 181 181 ALA ALA A . n A 1 183 GLY 183 182 182 GLY GLY A . n A 1 184 ASP 184 183 183 ASP ASP A . n A 1 185 PRO 185 184 184 PRO PRO A . n A 1 186 GLU 186 185 185 GLU GLU A . n A 1 187 PRO 187 186 186 PRO PRO A . n A 1 188 PRO 188 187 187 PRO PRO A . n A 1 189 ALA 189 188 188 ALA ALA A . n A 1 190 ARG 190 189 189 ARG ARG A . n A 1 191 ILE 191 190 190 ILE ILE A . n A 1 192 HIS 192 191 191 HIS HIS A . n A 1 193 GLY 193 192 192 GLY GLY A . n A 1 194 ASP 194 193 193 ASP ASP A . n A 1 195 LEU 195 194 194 LEU LEU A . n A 1 196 TRP 196 195 195 TRP TRP A . n A 1 197 ASN 197 196 196 ASN ASN A . n A 1 198 GLY 198 197 197 GLY GLY A . n A 1 199 ASN 199 198 198 ASN ASN A . n A 1 200 VAL 200 199 199 VAL VAL A . n A 1 201 LEU 201 200 200 LEU LEU A . n A 1 202 TRP 202 201 201 TRP TRP A . n A 1 203 GLN 203 202 202 GLN GLN A . n A 1 204 ASP 204 203 203 ASP ASP A . n A 1 205 ASP 205 204 204 ASP ASP A . n A 1 206 GLY 206 205 205 GLY GLY A . n A 1 207 ALA 207 206 206 ALA ALA A . n A 1 208 VAL 208 207 207 VAL VAL A . n A 1 209 VAL 209 208 208 VAL VAL A . n A 1 210 ILE 210 209 209 ILE ILE A . n A 1 211 ASP 211 210 210 ASP ASP A . n A 1 212 PRO 212 211 211 PRO PRO A . n A 1 213 ALA 213 212 212 ALA ALA A . n A 1 214 ALA 214 213 213 ALA ALA A . n A 1 215 HIS 215 214 214 HIS HIS A . n A 1 216 GLY 216 215 215 GLY GLY A . n A 1 217 GLY 217 216 216 GLY GLY A . n A 1 218 HIS 218 217 217 HIS HIS A . n A 1 219 ARG 219 218 218 ARG ARG A . n A 1 220 GLU 220 219 219 GLU GLU A . n A 1 221 ALA 221 220 220 ALA ALA A . n A 1 222 ASP 222 221 221 ASP ASP A . n A 1 223 LEU 223 222 222 LEU LEU A . n A 1 224 ALA 224 223 223 ALA ALA A . n A 1 225 MSE 225 224 224 MSE MSE A . n A 1 226 LEU 226 225 225 LEU LEU A . n A 1 227 ALA 227 226 226 ALA ALA A . n A 1 228 LEU 228 227 227 LEU LEU A . n A 1 229 PHE 229 228 228 PHE PHE A . n A 1 230 GLY 230 229 229 GLY GLY A . n A 1 231 LEU 231 230 230 LEU LEU A . n A 1 232 PRO 232 231 231 PRO PRO A . n A 1 233 TYR 233 232 232 TYR TYR A . n A 1 234 LEU 234 233 233 LEU LEU A . n A 1 235 ASP 235 234 234 ASP ASP A . n A 1 236 ARG 236 235 235 ARG ARG A . n A 1 237 VAL 237 236 236 VAL VAL A . n A 1 238 ARG 238 237 237 ARG ARG A . n A 1 239 ASP 239 238 238 ASP ASP A . n A 1 240 ALA 240 239 239 ALA ALA A . n A 1 241 TYR 241 240 240 TYR TYR A . n A 1 242 ASN 242 241 241 ASN ASN A . n A 1 243 GLU 243 242 242 GLU GLU A . n A 1 244 VAL 244 243 243 VAL VAL A . n A 1 245 ALA 245 244 244 ALA ALA A . n A 1 246 PRO 246 245 245 PRO PRO A . n A 1 247 LEU 247 246 246 LEU LEU A . n A 1 248 ALA 248 247 247 ALA ALA A . n A 1 249 GLU 249 248 248 GLU GLU A . n A 1 250 GLY 250 249 249 GLY GLY A . n A 1 251 TRP 251 250 250 TRP TRP A . n A 1 252 ARG 252 251 251 ARG ARG A . n A 1 253 ALA 253 252 252 ALA ALA A . n A 1 254 ARG 254 253 253 ARG ARG A . n A 1 255 ILE 255 254 254 ILE ILE A . n A 1 256 PRO 256 255 255 PRO PRO A . n A 1 257 LEU 257 256 256 LEU LEU A . n A 1 258 HIS 258 257 257 HIS HIS A . n A 1 259 GLN 259 258 258 GLN GLN A . n A 1 260 LEU 260 259 259 LEU LEU A . n A 1 261 HIS 261 260 260 HIS HIS A . n A 1 262 PRO 262 261 261 PRO PRO A . n A 1 263 LEU 263 262 262 LEU LEU A . n A 1 264 LEU 264 263 263 LEU LEU A . n A 1 265 VAL 265 264 264 VAL VAL A . n A 1 266 HIS 266 265 265 HIS HIS A . n A 1 267 VAL 267 266 266 VAL VAL A . n A 1 268 CYS 268 267 267 CYS CYS A . n A 1 269 LEU 269 268 268 LEU LEU A . n A 1 270 PHE 270 269 269 PHE PHE A . n A 1 271 GLY 271 270 270 GLY GLY A . n A 1 272 ALA 272 271 271 ALA ALA A . n A 1 273 ALA 273 272 272 ALA ALA A . n A 1 274 TYR 274 273 273 TYR TYR A . n A 1 275 ARG 275 274 274 ARG ARG A . n A 1 276 THR 276 275 275 THR THR A . n A 1 277 THR 277 276 276 THR THR A . n A 1 278 LEU 278 277 277 LEU LEU A . n A 1 279 VAL 279 278 278 VAL VAL A . n A 1 280 ASP 280 279 279 ASP ASP A . n A 1 281 THR 281 280 280 THR THR A . n A 1 282 ALA 282 281 281 ALA ALA A . n A 1 283 ARG 283 282 282 ARG ARG A . n A 1 284 ALA 284 283 283 ALA ALA A . n A 1 285 ALA 285 284 284 ALA ALA A . n A 1 286 LEU 286 285 285 LEU LEU A . n A 1 287 ARG 287 286 286 ARG ARG A . n A 1 288 ALA 288 287 287 ALA ALA A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 288 1 CL CL A . C 2 CL 1 289 2 CL CL A . D 3 EDO 1 290 3 EDO EDO A . E 3 EDO 1 291 4 EDO EDO A . F 3 EDO 1 292 5 EDO EDO A . G 3 EDO 1 293 6 EDO EDO A . H 3 EDO 1 294 7 EDO EDO A . I 4 PEG 1 295 8 PEG PEG A . J 5 GOL 1 296 9 GOL GOL A . K 6 HOH 1 297 10 HOH HOH A . K 6 HOH 2 298 11 HOH HOH A . K 6 HOH 3 299 12 HOH HOH A . K 6 HOH 4 300 13 HOH HOH A . K 6 HOH 5 301 14 HOH HOH A . K 6 HOH 6 302 15 HOH HOH A . K 6 HOH 7 303 16 HOH HOH A . K 6 HOH 8 304 17 HOH HOH A . K 6 HOH 9 305 18 HOH HOH A . K 6 HOH 10 306 19 HOH HOH A . K 6 HOH 11 307 20 HOH HOH A . K 6 HOH 12 308 21 HOH HOH A . K 6 HOH 13 309 22 HOH HOH A . K 6 HOH 14 310 23 HOH HOH A . K 6 HOH 15 311 24 HOH HOH A . K 6 HOH 16 312 25 HOH HOH A . K 6 HOH 17 313 26 HOH HOH A . K 6 HOH 18 314 27 HOH HOH A . K 6 HOH 19 315 28 HOH HOH A . K 6 HOH 20 316 29 HOH HOH A . K 6 HOH 21 317 30 HOH HOH A . K 6 HOH 22 318 31 HOH HOH A . K 6 HOH 23 319 32 HOH HOH A . K 6 HOH 24 320 33 HOH HOH A . K 6 HOH 25 321 34 HOH HOH A . K 6 HOH 26 322 35 HOH HOH A . K 6 HOH 27 323 36 HOH HOH A . K 6 HOH 28 324 37 HOH HOH A . K 6 HOH 29 325 38 HOH HOH A . K 6 HOH 30 326 39 HOH HOH A . K 6 HOH 31 327 40 HOH HOH A . K 6 HOH 32 328 41 HOH HOH A . K 6 HOH 33 329 42 HOH HOH A . K 6 HOH 34 330 43 HOH HOH A . K 6 HOH 35 331 44 HOH HOH A . K 6 HOH 36 332 45 HOH HOH A . K 6 HOH 37 333 46 HOH HOH A . K 6 HOH 38 334 47 HOH HOH A . K 6 HOH 39 335 48 HOH HOH A . K 6 HOH 40 336 49 HOH HOH A . K 6 HOH 41 337 50 HOH HOH A . K 6 HOH 42 338 51 HOH HOH A . K 6 HOH 43 339 52 HOH HOH A . K 6 HOH 44 340 53 HOH HOH A . K 6 HOH 45 341 54 HOH HOH A . K 6 HOH 46 342 55 HOH HOH A . K 6 HOH 47 343 56 HOH HOH A . K 6 HOH 48 344 57 HOH HOH A . K 6 HOH 49 345 58 HOH HOH A . K 6 HOH 50 346 59 HOH HOH A . K 6 HOH 51 347 60 HOH HOH A . K 6 HOH 52 348 61 HOH HOH A . K 6 HOH 53 349 62 HOH HOH A . K 6 HOH 54 350 63 HOH HOH A . K 6 HOH 55 351 64 HOH HOH A . K 6 HOH 56 352 65 HOH HOH A . K 6 HOH 57 353 66 HOH HOH A . K 6 HOH 58 354 67 HOH HOH A . K 6 HOH 59 355 68 HOH HOH A . K 6 HOH 60 356 69 HOH HOH A . K 6 HOH 61 357 70 HOH HOH A . K 6 HOH 62 358 71 HOH HOH A . K 6 HOH 63 359 72 HOH HOH A . K 6 HOH 64 360 73 HOH HOH A . K 6 HOH 65 361 74 HOH HOH A . K 6 HOH 66 362 75 HOH HOH A . K 6 HOH 67 363 76 HOH HOH A . K 6 HOH 68 364 77 HOH HOH A . K 6 HOH 69 365 78 HOH HOH A . K 6 HOH 70 366 79 HOH HOH A . K 6 HOH 71 367 80 HOH HOH A . K 6 HOH 72 368 81 HOH HOH A . K 6 HOH 73 369 82 HOH HOH A . K 6 HOH 74 370 83 HOH HOH A . K 6 HOH 75 371 84 HOH HOH A . K 6 HOH 76 372 85 HOH HOH A . K 6 HOH 77 373 86 HOH HOH A . K 6 HOH 78 374 87 HOH HOH A . K 6 HOH 79 375 88 HOH HOH A . K 6 HOH 80 376 89 HOH HOH A . K 6 HOH 81 377 90 HOH HOH A . K 6 HOH 82 378 91 HOH HOH A . K 6 HOH 83 379 92 HOH HOH A . K 6 HOH 84 380 93 HOH HOH A . K 6 HOH 85 381 94 HOH HOH A . K 6 HOH 86 382 95 HOH HOH A . K 6 HOH 87 383 96 HOH HOH A . K 6 HOH 88 384 97 HOH HOH A . K 6 HOH 89 385 98 HOH HOH A . K 6 HOH 90 386 99 HOH HOH A . K 6 HOH 91 387 100 HOH HOH A . K 6 HOH 92 388 101 HOH HOH A . K 6 HOH 93 389 102 HOH HOH A . K 6 HOH 94 390 103 HOH HOH A . K 6 HOH 95 391 104 HOH HOH A . K 6 HOH 96 392 105 HOH HOH A . K 6 HOH 97 393 106 HOH HOH A . K 6 HOH 98 394 107 HOH HOH A . K 6 HOH 99 395 108 HOH HOH A . K 6 HOH 100 396 109 HOH HOH A . K 6 HOH 101 397 110 HOH HOH A . K 6 HOH 102 398 111 HOH HOH A . K 6 HOH 103 399 112 HOH HOH A . K 6 HOH 104 400 113 HOH HOH A . K 6 HOH 105 401 114 HOH HOH A . K 6 HOH 106 402 115 HOH HOH A . K 6 HOH 107 403 116 HOH HOH A . K 6 HOH 108 404 117 HOH HOH A . K 6 HOH 109 405 118 HOH HOH A . K 6 HOH 110 406 119 HOH HOH A . K 6 HOH 111 407 120 HOH HOH A . K 6 HOH 112 408 121 HOH HOH A . K 6 HOH 113 409 122 HOH HOH A . K 6 HOH 114 410 123 HOH HOH A . K 6 HOH 115 411 124 HOH HOH A . K 6 HOH 116 412 125 HOH HOH A . K 6 HOH 117 413 126 HOH HOH A . K 6 HOH 118 414 127 HOH HOH A . K 6 HOH 119 415 128 HOH HOH A . K 6 HOH 120 416 129 HOH HOH A . K 6 HOH 121 417 130 HOH HOH A . K 6 HOH 122 418 131 HOH HOH A . K 6 HOH 123 419 132 HOH HOH A . K 6 HOH 124 420 133 HOH HOH A . K 6 HOH 125 421 134 HOH HOH A . K 6 HOH 126 422 135 HOH HOH A . K 6 HOH 127 423 136 HOH HOH A . K 6 HOH 128 424 137 HOH HOH A . K 6 HOH 129 425 138 HOH HOH A . K 6 HOH 130 426 139 HOH HOH A . K 6 HOH 131 427 140 HOH HOH A . K 6 HOH 132 428 141 HOH HOH A . K 6 HOH 133 429 142 HOH HOH A . K 6 HOH 134 430 143 HOH HOH A . K 6 HOH 135 431 144 HOH HOH A . K 6 HOH 136 432 145 HOH HOH A . K 6 HOH 137 433 146 HOH HOH A . K 6 HOH 138 434 147 HOH HOH A . K 6 HOH 139 435 148 HOH HOH A . K 6 HOH 140 436 149 HOH HOH A . K 6 HOH 141 437 150 HOH HOH A . K 6 HOH 142 438 151 HOH HOH A . K 6 HOH 143 439 152 HOH HOH A . K 6 HOH 144 440 153 HOH HOH A . K 6 HOH 145 441 154 HOH HOH A . K 6 HOH 146 442 155 HOH HOH A . K 6 HOH 147 443 156 HOH HOH A . K 6 HOH 148 444 157 HOH HOH A . K 6 HOH 149 445 158 HOH HOH A . K 6 HOH 150 446 159 HOH HOH A . K 6 HOH 151 447 160 HOH HOH A . K 6 HOH 152 448 161 HOH HOH A . K 6 HOH 153 449 162 HOH HOH A . K 6 HOH 154 450 163 HOH HOH A . K 6 HOH 155 451 164 HOH HOH A . K 6 HOH 156 452 165 HOH HOH A . K 6 HOH 157 453 166 HOH HOH A . K 6 HOH 158 454 167 HOH HOH A . K 6 HOH 159 455 168 HOH HOH A . K 6 HOH 160 456 169 HOH HOH A . K 6 HOH 161 457 170 HOH HOH A . K 6 HOH 162 458 171 HOH HOH A . K 6 HOH 163 459 172 HOH HOH A . K 6 HOH 164 460 173 HOH HOH A . K 6 HOH 165 461 174 HOH HOH A . K 6 HOH 166 462 175 HOH HOH A . K 6 HOH 167 463 176 HOH HOH A . K 6 HOH 168 464 177 HOH HOH A . K 6 HOH 169 465 178 HOH HOH A . K 6 HOH 170 466 179 HOH HOH A . K 6 HOH 171 467 180 HOH HOH A . K 6 HOH 172 468 181 HOH HOH A . K 6 HOH 173 469 182 HOH HOH A . K 6 HOH 174 470 183 HOH HOH A . K 6 HOH 175 471 184 HOH HOH A . K 6 HOH 176 472 185 HOH HOH A . K 6 HOH 177 473 186 HOH HOH A . K 6 HOH 178 474 187 HOH HOH A . K 6 HOH 179 475 188 HOH HOH A . K 6 HOH 180 476 189 HOH HOH A . K 6 HOH 181 477 190 HOH HOH A . K 6 HOH 182 478 191 HOH HOH A . K 6 HOH 183 479 192 HOH HOH A . K 6 HOH 184 480 193 HOH HOH A . K 6 HOH 185 481 194 HOH HOH A . K 6 HOH 186 482 195 HOH HOH A . K 6 HOH 187 483 196 HOH HOH A . K 6 HOH 188 484 197 HOH HOH A . K 6 HOH 189 485 198 HOH HOH A . K 6 HOH 190 486 199 HOH HOH A . K 6 HOH 191 487 200 HOH HOH A . K 6 HOH 192 488 201 HOH HOH A . K 6 HOH 193 489 202 HOH HOH A . K 6 HOH 194 490 203 HOH HOH A . K 6 HOH 195 491 204 HOH HOH A . K 6 HOH 196 492 205 HOH HOH A . K 6 HOH 197 493 206 HOH HOH A . K 6 HOH 198 494 207 HOH HOH A . K 6 HOH 199 495 208 HOH HOH A . K 6 HOH 200 496 209 HOH HOH A . K 6 HOH 201 497 210 HOH HOH A . K 6 HOH 202 498 211 HOH HOH A . K 6 HOH 203 499 212 HOH HOH A . K 6 HOH 204 500 213 HOH HOH A . K 6 HOH 205 501 214 HOH HOH A . K 6 HOH 206 502 215 HOH HOH A . K 6 HOH 207 503 216 HOH HOH A . K 6 HOH 208 504 217 HOH HOH A . K 6 HOH 209 505 218 HOH HOH A . K 6 HOH 210 506 219 HOH HOH A . K 6 HOH 211 507 220 HOH HOH A . K 6 HOH 212 508 221 HOH HOH A . K 6 HOH 213 509 222 HOH HOH A . K 6 HOH 214 510 223 HOH HOH A . K 6 HOH 215 511 224 HOH HOH A . K 6 HOH 216 512 225 HOH HOH A . K 6 HOH 217 513 226 HOH HOH A . K 6 HOH 218 514 227 HOH HOH A . K 6 HOH 219 515 228 HOH HOH A . K 6 HOH 220 516 229 HOH HOH A . K 6 HOH 221 517 230 HOH HOH A . K 6 HOH 222 518 231 HOH HOH A . K 6 HOH 223 519 232 HOH HOH A . K 6 HOH 224 520 233 HOH HOH A . K 6 HOH 225 521 234 HOH HOH A . K 6 HOH 226 522 235 HOH HOH A . K 6 HOH 227 523 236 HOH HOH A . K 6 HOH 228 524 237 HOH HOH A . K 6 HOH 229 525 238 HOH HOH A . K 6 HOH 230 526 239 HOH HOH A . K 6 HOH 231 527 240 HOH HOH A . K 6 HOH 232 528 241 HOH HOH A . K 6 HOH 233 529 242 HOH HOH A . K 6 HOH 234 530 243 HOH HOH A . K 6 HOH 235 531 244 HOH HOH A . K 6 HOH 236 532 245 HOH HOH A . K 6 HOH 237 533 246 HOH HOH A . K 6 HOH 238 534 247 HOH HOH A . K 6 HOH 239 535 248 HOH HOH A . K 6 HOH 240 536 249 HOH HOH A . K 6 HOH 241 537 250 HOH HOH A . K 6 HOH 242 538 251 HOH HOH A . K 6 HOH 243 539 252 HOH HOH A . K 6 HOH 244 540 253 HOH HOH A . K 6 HOH 245 541 254 HOH HOH A . K 6 HOH 246 542 255 HOH HOH A . K 6 HOH 247 543 256 HOH HOH A . K 6 HOH 248 544 257 HOH HOH A . K 6 HOH 249 545 258 HOH HOH A . K 6 HOH 250 546 259 HOH HOH A . K 6 HOH 251 547 260 HOH HOH A . K 6 HOH 252 548 261 HOH HOH A . K 6 HOH 253 549 262 HOH HOH A . K 6 HOH 254 550 263 HOH HOH A . K 6 HOH 255 551 264 HOH HOH A . K 6 HOH 256 552 265 HOH HOH A . K 6 HOH 257 553 266 HOH HOH A . K 6 HOH 258 554 267 HOH HOH A . K 6 HOH 259 555 268 HOH HOH A . K 6 HOH 260 556 269 HOH HOH A . K 6 HOH 261 557 270 HOH HOH A . K 6 HOH 262 558 271 HOH HOH A . K 6 HOH 263 559 272 HOH HOH A . K 6 HOH 264 560 273 HOH HOH A . K 6 HOH 265 561 274 HOH HOH A . K 6 HOH 266 562 275 HOH HOH A . K 6 HOH 267 563 276 HOH HOH A . K 6 HOH 268 564 277 HOH HOH A . K 6 HOH 269 565 278 HOH HOH A . K 6 HOH 270 566 279 HOH HOH A . K 6 HOH 271 567 280 HOH HOH A . K 6 HOH 272 568 281 HOH HOH A . K 6 HOH 273 569 282 HOH HOH A . K 6 HOH 274 570 283 HOH HOH A . K 6 HOH 275 571 284 HOH HOH A . K 6 HOH 276 572 285 HOH HOH A . K 6 HOH 277 573 286 HOH HOH A . K 6 HOH 278 574 287 HOH HOH A . K 6 HOH 279 575 288 HOH HOH A . K 6 HOH 280 576 289 HOH HOH A . K 6 HOH 281 577 290 HOH HOH A . K 6 HOH 282 578 291 HOH HOH A . K 6 HOH 283 579 292 HOH HOH A . K 6 HOH 284 580 293 HOH HOH A . K 6 HOH 285 581 294 HOH HOH A . K 6 HOH 286 582 295 HOH HOH A . K 6 HOH 287 583 296 HOH HOH A . K 6 HOH 288 584 297 HOH HOH A . K 6 HOH 289 585 298 HOH HOH A . K 6 HOH 290 586 299 HOH HOH A . K 6 HOH 291 587 300 HOH HOH A . K 6 HOH 292 588 301 HOH HOH A . K 6 HOH 293 589 302 HOH HOH A . K 6 HOH 294 590 303 HOH HOH A . K 6 HOH 295 591 304 HOH HOH A . K 6 HOH 296 592 305 HOH HOH A . K 6 HOH 297 593 306 HOH HOH A . K 6 HOH 298 594 307 HOH HOH A . K 6 HOH 299 595 308 HOH HOH A . K 6 HOH 300 596 309 HOH HOH A . K 6 HOH 301 597 310 HOH HOH A . K 6 HOH 302 598 311 HOH HOH A . K 6 HOH 303 599 312 HOH HOH A . K 6 HOH 304 600 313 HOH HOH A . K 6 HOH 305 601 314 HOH HOH A . K 6 HOH 306 602 315 HOH HOH A . K 6 HOH 307 603 316 HOH HOH A . K 6 HOH 308 604 317 HOH HOH A . K 6 HOH 309 605 318 HOH HOH A . K 6 HOH 310 606 319 HOH HOH A . K 6 HOH 311 607 320 HOH HOH A . K 6 HOH 312 608 321 HOH HOH A . K 6 HOH 313 609 322 HOH HOH A . K 6 HOH 314 610 323 HOH HOH A . K 6 HOH 315 611 324 HOH HOH A . K 6 HOH 316 612 325 HOH HOH A . K 6 HOH 317 613 326 HOH HOH A . K 6 HOH 318 614 327 HOH HOH A . K 6 HOH 319 615 328 HOH HOH A . K 6 HOH 320 616 329 HOH HOH A . K 6 HOH 321 617 330 HOH HOH A . K 6 HOH 322 618 331 HOH HOH A . K 6 HOH 323 619 332 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 89 A MSE 88 ? MET SELENOMETHIONINE 2 A MSE 112 A MSE 111 ? MET SELENOMETHIONINE 3 A MSE 133 A MSE 132 ? MET SELENOMETHIONINE 4 A MSE 225 A MSE 224 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-05-20 2 'Structure model' 1 1 2008-11-25 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 61.3180 _pdbx_refine_tls.origin_y 11.2623 _pdbx_refine_tls.origin_z 7.7478 _pdbx_refine_tls.T[1][1] -0.1096 _pdbx_refine_tls.T[2][2] -0.0486 _pdbx_refine_tls.T[3][3] -0.0722 _pdbx_refine_tls.T[1][2] -0.0007 _pdbx_refine_tls.T[1][3] -0.0038 _pdbx_refine_tls.T[2][3] 0.0180 _pdbx_refine_tls.L[1][1] 0.7658 _pdbx_refine_tls.L[2][2] 1.2182 _pdbx_refine_tls.L[3][3] 1.5046 _pdbx_refine_tls.L[1][2] 0.0488 _pdbx_refine_tls.L[1][3] 0.0039 _pdbx_refine_tls.L[2][3] -0.0621 _pdbx_refine_tls.S[1][1] -0.0053 _pdbx_refine_tls.S[2][2] 0.0051 _pdbx_refine_tls.S[3][3] 0.0003 _pdbx_refine_tls.S[1][2] 0.1148 _pdbx_refine_tls.S[1][3] 0.0153 _pdbx_refine_tls.S[2][3] 0.0062 _pdbx_refine_tls.S[2][1] -0.0833 _pdbx_refine_tls.S[3][1] 0.0744 _pdbx_refine_tls.S[3][2] 0.0567 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 288 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 287 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MOLPROBITY 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu validation http://kinemage.biochem.duke.edu/molprobity/ ? ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 REFMAC5 5.4.0069 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 4 SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data processing' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 5 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 SCALA . ? ? ? ? 'data scaling' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 autoSHARP . ? ? ? ? phasing ? ? ? 10 REFMAC 5.4.0069 ? ? ? ? refinement ? ? ? 11 # _pdbx_entry_details.entry_id 3D1U _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 1 ? B 159.63 114.68 2 1 ASN A 2 ? B -102.08 49.90 3 1 SER A 3 ? B 28.01 55.16 4 1 HIS A 26 ? ? 46.36 -113.87 5 1 HIS A 26 ? ? 46.36 -113.48 6 1 ASP A 48 ? B -38.01 -39.74 7 1 ASP A 49 ? A 77.57 -9.61 8 1 ASP A 54 ? A -52.36 107.44 9 1 ARG A 69 ? A -97.92 56.56 10 1 ASP A 193 ? ? -148.05 49.19 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ASN _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 2 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 B _pdbx_validate_peptide_omega.auth_comp_id_2 SER _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 3 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 B _pdbx_validate_peptide_omega.omega -145.87 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A VAL 1 ? CG1 ? A VAL 2 CG1 2 1 Y 1 A VAL 1 ? CG2 ? A VAL 2 CG2 3 1 Y 1 A HIS 24 ? ND1 ? A HIS 25 ND1 4 1 Y 1 A HIS 24 ? CD2 ? A HIS 25 CD2 5 1 Y 1 A HIS 24 ? CE1 ? A HIS 25 CE1 6 1 Y 1 A HIS 24 ? NE2 ? A HIS 25 NE2 7 1 N 1 A PEG 295 ? O1 ? I PEG 1 O1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 1,2-ETHANEDIOL EDO 4 'DI(HYDROXYETHYL)ETHER' PEG 5 GLYCEROL GOL 6 water HOH #