data_3D1Y # _entry.id 3D1Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3D1Y pdb_00003d1y 10.2210/pdb3d1y/pdb RCSB RCSB047489 ? ? WWPDB D_1000047489 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-05-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2013-02-27 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Non-polymer description' 5 2 'Structure model' 'Structure summary' 6 2 'Structure model' 'Version format compliance' 7 3 'Structure model' Other 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Derived calculations' 10 4 'Structure model' 'Structure summary' 11 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' database_2 3 4 'Structure model' entity 4 4 'Structure model' pdbx_entity_nonpoly 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.pdbx_synonyms' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_entity.pdbx_description' 6 4 'Structure model' '_pdbx_entity_nonpoly.name' 7 4 'Structure model' '_struct_ref_seq_dif.details' 8 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3D1Y _pdbx_database_status.recvd_initial_deposition_date 2008-05-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3CYW 'Mutant G48V complexed with DARUNAVIR at 1.4A resolution' unspecified PDB 3CYX 'Mutant I50V and inhibitor saquinavir at 1.2 A resolution' unspecified PDB 3D1X 'MUTANT I54M AND INHIBITOR SAQUINAvir at 1.05A' unspecified PDB 3D1Z 'Mutant I54M and inhibitor DARUNAVIR at 1.3A' unspecified PDB 3D20 'MUTANT I54V AND INHIBITOR DARUNAVIA at 1.05A' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Liu, F.' 1 'Weber, I.T.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Effect of flap mutations on structure of HIV-1 protease and inhibition by saquinavir and darunavir.' J.Mol.Biol. 381 102 115 2008 JMOBAK UK 0022-2836 0070 ? 18597780 10.1016/j.jmb.2008.05.062 1 ;Ultra-High Resolution Crystal Structure of HIV-1 Protease Mutant Reveals Two Binding Sites for Clinical Inhibitor Tmc114 ; J.Mol.Biol. 365 901 ? 2006 JMOBAK UK 0022-2836 0070 ? 16962136 10.1016/j.jmb.2006.08.007 2 ;Kinetic, Stability, and Structural Changes in High-Resolution Crystal Structures of HIV-1 Protease with Drug-Resistant Mutations L24I, I50V, and G73S. ; J.Mol.Biol. 354 789 ? 2005 JMOBAK UK 0022-2836 0070 ? 16277992 10.1016/j.jmb.2005.09.095 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, F.' 1 ? primary 'Kovalevsky, A.Y.' 2 ? primary 'Tie, Y.' 3 ? primary 'Ghosh, A.K.' 4 ? primary 'Harrison, R.W.' 5 ? primary 'Weber, I.T.' 6 ? 1 'Kovalevsky, A.Y.' 7 ? 1 'Liu, F.' 8 ? 1 'Leshchenko, S.' 9 ? 1 'Ghosh, A.K.' 10 ? 1 'Harrison, R.W.' 11 ? 1 'Weber, I.T.' 12 ? 2 'Liu, F.' 13 ? 2 'Boross, P.I.' 14 ? 2 'Wang, Y.F.' 15 ? 2 'Tozser, J.' 16 ? 2 'Louis, J.M.' 17 ? 2 'Harrison, R.W.' 18 ? 2 'Weber, I.T.' 19 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HIV-1 Protease' 10726.649 2 3.4.23.16 I54V ? ? 2 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 4 non-polymer syn ;(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide ; 670.841 1 ? ? ? ? 5 water nat water 18.015 223 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Retropepsin, PR' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFVKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF ; _entity_poly.pdbx_seq_one_letter_code_can ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFVKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'CHLORIDE ION' CL 4 ;(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide ; ROC 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ILE n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 LYS n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 ILE n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 SER n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 ARG n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 VAL n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 ILE n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 ALA n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 VAL n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 ALA n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HIV-1 _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene gag-pol _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus type 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11682 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 ROC peptide-like . ;(2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide ; 'Fortovase; SAQUINAVIR; RO 31-8959' 'C38 H50 N6 O5' 670.841 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 1 1 PRO 1 101 101 PRO PRO B . n B 1 2 GLN 2 102 102 GLN GLN B . n B 1 3 ILE 3 103 103 ILE ILE B . n B 1 4 THR 4 104 104 THR THR B . n B 1 5 LEU 5 105 105 LEU LEU B . n B 1 6 TRP 6 106 106 TRP TRP B . n B 1 7 LYS 7 107 107 LYS LYS B . n B 1 8 ARG 8 108 108 ARG ARG B . n B 1 9 PRO 9 109 109 PRO PRO B . n B 1 10 LEU 10 110 110 LEU LEU B . n B 1 11 VAL 11 111 111 VAL VAL B . n B 1 12 THR 12 112 112 THR THR B . n B 1 13 ILE 13 113 113 ILE ILE B . n B 1 14 LYS 14 114 114 LYS LYS B . n B 1 15 ILE 15 115 115 ILE ILE B . n B 1 16 GLY 16 116 116 GLY GLY B . n B 1 17 GLY 17 117 117 GLY GLY B . n B 1 18 GLN 18 118 118 GLN GLN B . n B 1 19 LEU 19 119 119 LEU LEU B . n B 1 20 LYS 20 120 120 LYS LYS B . n B 1 21 GLU 21 121 121 GLU GLU B . n B 1 22 ALA 22 122 122 ALA ALA B . n B 1 23 LEU 23 123 123 LEU LEU B . n B 1 24 LEU 24 124 124 LEU LEU B . n B 1 25 ASP 25 125 125 ASP ASP B . n B 1 26 THR 26 126 126 THR THR B . n B 1 27 GLY 27 127 127 GLY GLY B . n B 1 28 ALA 28 128 128 ALA ALA B . n B 1 29 ASP 29 129 129 ASP ASP B . n B 1 30 ASP 30 130 130 ASP ASP B . n B 1 31 THR 31 131 131 THR THR B . n B 1 32 VAL 32 132 132 VAL VAL B . n B 1 33 ILE 33 133 133 ILE ILE B . n B 1 34 GLU 34 134 134 GLU GLU B . n B 1 35 GLU 35 135 135 GLU GLU B . n B 1 36 MET 36 136 136 MET MET B . n B 1 37 SER 37 137 137 SER SER B . n B 1 38 LEU 38 138 138 LEU LEU B . n B 1 39 PRO 39 139 139 PRO PRO B . n B 1 40 GLY 40 140 140 GLY GLY B . n B 1 41 ARG 41 141 141 ARG ARG B . n B 1 42 TRP 42 142 142 TRP TRP B . n B 1 43 LYS 43 143 143 LYS LYS B . n B 1 44 PRO 44 144 144 PRO PRO B . n B 1 45 LYS 45 145 145 LYS LYS B . n B 1 46 MET 46 146 146 MET MET B . n B 1 47 ILE 47 147 147 ILE ILE B . n B 1 48 GLY 48 148 148 GLY GLY B . n B 1 49 GLY 49 149 149 GLY GLY B . n B 1 50 ILE 50 150 150 ILE ILE B . n B 1 51 GLY 51 151 151 GLY GLY B . n B 1 52 GLY 52 152 152 GLY GLY B . n B 1 53 PHE 53 153 153 PHE PHE B . n B 1 54 VAL 54 154 154 VAL VAL B . n B 1 55 LYS 55 155 155 LYS LYS B . n B 1 56 VAL 56 156 156 VAL VAL B . n B 1 57 ARG 57 157 157 ARG ARG B . n B 1 58 GLN 58 158 158 GLN GLN B . n B 1 59 TYR 59 159 159 TYR TYR B . n B 1 60 ASP 60 160 160 ASP ASP B . n B 1 61 GLN 61 161 161 GLN GLN B . n B 1 62 ILE 62 162 162 ILE ILE B . n B 1 63 ILE 63 163 163 ILE ILE B . n B 1 64 ILE 64 164 164 ILE ILE B . n B 1 65 GLU 65 165 165 GLU GLU B . n B 1 66 ILE 66 166 166 ILE ILE B . n B 1 67 ALA 67 167 167 ALA ALA B . n B 1 68 GLY 68 168 168 GLY GLY B . n B 1 69 HIS 69 169 169 HIS HIS B . n B 1 70 LYS 70 170 170 LYS LYS B . n B 1 71 ALA 71 171 171 ALA ALA B . n B 1 72 ILE 72 172 172 ILE ILE B . n B 1 73 GLY 73 173 173 GLY GLY B . n B 1 74 THR 74 174 174 THR THR B . n B 1 75 VAL 75 175 175 VAL VAL B . n B 1 76 LEU 76 176 176 LEU LEU B . n B 1 77 VAL 77 177 177 VAL VAL B . n B 1 78 GLY 78 178 178 GLY GLY B . n B 1 79 PRO 79 179 179 PRO PRO B . n B 1 80 THR 80 180 180 THR THR B . n B 1 81 PRO 81 181 181 PRO PRO B . n B 1 82 VAL 82 182 182 VAL VAL B . n B 1 83 ASN 83 183 183 ASN ASN B . n B 1 84 ILE 84 184 184 ILE ILE B . n B 1 85 ILE 85 185 185 ILE ILE B . n B 1 86 GLY 86 186 186 GLY GLY B . n B 1 87 ARG 87 187 187 ARG ARG B . n B 1 88 ASN 88 188 188 ASN ASN B . n B 1 89 LEU 89 189 189 LEU LEU B . n B 1 90 LEU 90 190 190 LEU LEU B . n B 1 91 THR 91 191 191 THR THR B . n B 1 92 GLN 92 192 192 GLN GLN B . n B 1 93 ILE 93 193 193 ILE ILE B . n B 1 94 GLY 94 194 194 GLY GLY B . n B 1 95 ALA 95 195 195 ALA ALA B . n B 1 96 THR 96 196 196 THR THR B . n B 1 97 LEU 97 197 197 LEU LEU B . n B 1 98 ASN 98 198 198 ASN ASN B . n B 1 99 PHE 99 199 199 PHE PHE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA 1 801 801 NA NA A . D 3 CL 1 802 802 CL CL A . E 4 ROC 1 201 201 ROC ROC A . F 3 CL 1 803 803 CL CL B . G 5 HOH 1 1001 1001 HOH HOH A . G 5 HOH 2 1003 1003 HOH HOH A . G 5 HOH 3 1004 1004 HOH HOH A . G 5 HOH 4 1005 1005 HOH HOH A . G 5 HOH 5 1007 1007 HOH HOH A . G 5 HOH 6 1010 1010 HOH HOH A . G 5 HOH 7 1012 1012 HOH HOH A . G 5 HOH 8 1014 1014 HOH HOH A . G 5 HOH 9 1020 1020 HOH HOH A . G 5 HOH 10 1021 1021 HOH HOH A . G 5 HOH 11 1023 1023 HOH HOH A . G 5 HOH 12 1024 1024 HOH HOH A . G 5 HOH 13 1025 1025 HOH HOH A . G 5 HOH 14 1027 1027 HOH HOH A . G 5 HOH 15 1031 1031 HOH HOH A . G 5 HOH 16 1032 1032 HOH HOH A . G 5 HOH 17 1034 1034 HOH HOH A . G 5 HOH 18 1036 1036 HOH HOH A . G 5 HOH 19 1039 1039 HOH HOH A . G 5 HOH 20 1040 1040 HOH HOH A . G 5 HOH 21 1042 1042 HOH HOH A . G 5 HOH 22 1045 1045 HOH HOH A . G 5 HOH 23 1046 1046 HOH HOH A . G 5 HOH 24 1054 1054 HOH HOH A . G 5 HOH 25 1055 1055 HOH HOH A . G 5 HOH 26 1058 1058 HOH HOH A . G 5 HOH 27 1061 1061 HOH HOH A . G 5 HOH 28 1064 1064 HOH HOH A . G 5 HOH 29 1065 1065 HOH HOH A . G 5 HOH 30 1066 1066 HOH HOH A . G 5 HOH 31 1067 1067 HOH HOH A . G 5 HOH 32 1068 1068 HOH HOH A . G 5 HOH 33 1073 1073 HOH HOH A . G 5 HOH 34 1074 1074 HOH HOH A . G 5 HOH 35 1077 1077 HOH HOH A . G 5 HOH 36 1081 1081 HOH HOH A . G 5 HOH 37 1082 1082 HOH HOH A . G 5 HOH 38 1086 1086 HOH HOH A . G 5 HOH 39 1088 1088 HOH HOH A . G 5 HOH 40 1089 1089 HOH HOH A . G 5 HOH 41 1090 1090 HOH HOH A . G 5 HOH 42 1091 1091 HOH HOH A . G 5 HOH 43 1092 1092 HOH HOH A . G 5 HOH 44 1093 1093 HOH HOH A . G 5 HOH 45 1094 1094 HOH HOH A . G 5 HOH 46 1095 1095 HOH HOH A . G 5 HOH 47 1096 1096 HOH HOH A . G 5 HOH 48 1097 1097 HOH HOH A . G 5 HOH 49 1099 1099 HOH HOH A . G 5 HOH 50 1100 1100 HOH HOH A . G 5 HOH 51 1101 1101 HOH HOH A . G 5 HOH 52 1102 1102 HOH HOH A . G 5 HOH 53 1106 1106 HOH HOH A . G 5 HOH 54 1107 1107 HOH HOH A . G 5 HOH 55 1108 1108 HOH HOH A . G 5 HOH 56 1109 1109 HOH HOH A . G 5 HOH 57 1110 1110 HOH HOH A . G 5 HOH 58 1111 1111 HOH HOH A . G 5 HOH 59 1114 1114 HOH HOH A . G 5 HOH 60 1118 1118 HOH HOH A . G 5 HOH 61 1122 1122 HOH HOH A . G 5 HOH 62 1123 1123 HOH HOH A . G 5 HOH 63 1125 1125 HOH HOH A . G 5 HOH 64 1126 1126 HOH HOH A . G 5 HOH 65 1127 1127 HOH HOH A . G 5 HOH 66 1129 1129 HOH HOH A . G 5 HOH 67 1130 1130 HOH HOH A . G 5 HOH 68 1133 1133 HOH HOH A . G 5 HOH 69 1134 1134 HOH HOH A . G 5 HOH 70 1135 1135 HOH HOH A . G 5 HOH 71 1138 1138 HOH HOH A . G 5 HOH 72 1139 1139 HOH HOH A . G 5 HOH 73 1141 1141 HOH HOH A . G 5 HOH 74 1142 1142 HOH HOH A . G 5 HOH 75 1144 1144 HOH HOH A . G 5 HOH 76 1145 1145 HOH HOH A . G 5 HOH 77 1146 1146 HOH HOH A . G 5 HOH 78 1147 1147 HOH HOH A . G 5 HOH 79 1149 1149 HOH HOH A . G 5 HOH 80 1151 1151 HOH HOH A . G 5 HOH 81 1155 1155 HOH HOH A . G 5 HOH 82 1158 1158 HOH HOH A . G 5 HOH 83 1161 1161 HOH HOH A . G 5 HOH 84 1167 1167 HOH HOH A . G 5 HOH 85 1168 1168 HOH HOH A . G 5 HOH 86 1169 1169 HOH HOH A . G 5 HOH 87 1170 1170 HOH HOH A . G 5 HOH 88 1172 1172 HOH HOH A . G 5 HOH 89 1173 1173 HOH HOH A . G 5 HOH 90 1175 1175 HOH HOH A . G 5 HOH 91 1176 1176 HOH HOH A . G 5 HOH 92 1177 1177 HOH HOH A . G 5 HOH 93 1183 1183 HOH HOH A . G 5 HOH 94 1184 1184 HOH HOH A . G 5 HOH 95 1186 1186 HOH HOH A . G 5 HOH 96 1188 1188 HOH HOH A . G 5 HOH 97 1190 1190 HOH HOH A . G 5 HOH 98 1191 1191 HOH HOH A . G 5 HOH 99 1192 1192 HOH HOH A . G 5 HOH 100 1193 1193 HOH HOH A . G 5 HOH 101 1195 1195 HOH HOH A . G 5 HOH 102 1196 1196 HOH HOH A . G 5 HOH 103 1197 1197 HOH HOH A . G 5 HOH 104 1200 1200 HOH HOH A . G 5 HOH 105 1201 1201 HOH HOH A . G 5 HOH 106 1202 1202 HOH HOH A . G 5 HOH 107 1204 1204 HOH HOH A . G 5 HOH 108 1205 1205 HOH HOH A . G 5 HOH 109 1210 1210 HOH HOH A . G 5 HOH 110 1212 1212 HOH HOH A . G 5 HOH 111 1214 1214 HOH HOH A . G 5 HOH 112 1216 1216 HOH HOH A . G 5 HOH 113 1219 1219 HOH HOH A . G 5 HOH 114 1221 1221 HOH HOH A . H 5 HOH 1 1002 1002 HOH HOH B . H 5 HOH 2 1006 1006 HOH HOH B . H 5 HOH 3 1008 1008 HOH HOH B . H 5 HOH 4 1009 1009 HOH HOH B . H 5 HOH 5 1011 1011 HOH HOH B . H 5 HOH 6 1013 1013 HOH HOH B . H 5 HOH 7 1015 1015 HOH HOH B . H 5 HOH 8 1016 1016 HOH HOH B . H 5 HOH 9 1017 1017 HOH HOH B . H 5 HOH 10 1018 1018 HOH HOH B . H 5 HOH 11 1019 1019 HOH HOH B . H 5 HOH 12 1022 1022 HOH HOH B . H 5 HOH 13 1026 1026 HOH HOH B . H 5 HOH 14 1028 1028 HOH HOH B . H 5 HOH 15 1029 1029 HOH HOH B . H 5 HOH 16 1030 1030 HOH HOH B . H 5 HOH 17 1033 1033 HOH HOH B . H 5 HOH 18 1035 1035 HOH HOH B . H 5 HOH 19 1037 1037 HOH HOH B . H 5 HOH 20 1038 1038 HOH HOH B . H 5 HOH 21 1041 1041 HOH HOH B . H 5 HOH 22 1043 1043 HOH HOH B . H 5 HOH 23 1044 1044 HOH HOH B . H 5 HOH 24 1047 1047 HOH HOH B . H 5 HOH 25 1048 1048 HOH HOH B . H 5 HOH 26 1049 1049 HOH HOH B . H 5 HOH 27 1050 1050 HOH HOH B . H 5 HOH 28 1051 1051 HOH HOH B . H 5 HOH 29 1052 1052 HOH HOH B . H 5 HOH 30 1053 1053 HOH HOH B . H 5 HOH 31 1056 1056 HOH HOH B . H 5 HOH 32 1057 1057 HOH HOH B . H 5 HOH 33 1059 1059 HOH HOH B . H 5 HOH 34 1060 1060 HOH HOH B . H 5 HOH 35 1062 1062 HOH HOH B . H 5 HOH 36 1063 1063 HOH HOH B . H 5 HOH 37 1069 1069 HOH HOH B . H 5 HOH 38 1070 1070 HOH HOH B . H 5 HOH 39 1071 1071 HOH HOH B . H 5 HOH 40 1072 1072 HOH HOH B . H 5 HOH 41 1075 1075 HOH HOH B . H 5 HOH 42 1076 1076 HOH HOH B . H 5 HOH 43 1078 1078 HOH HOH B . H 5 HOH 44 1079 1079 HOH HOH B . H 5 HOH 45 1080 1080 HOH HOH B . H 5 HOH 46 1083 1083 HOH HOH B . H 5 HOH 47 1084 1084 HOH HOH B . H 5 HOH 48 1085 1085 HOH HOH B . H 5 HOH 49 1087 1087 HOH HOH B . H 5 HOH 50 1098 1098 HOH HOH B . H 5 HOH 51 1103 1103 HOH HOH B . H 5 HOH 52 1104 1104 HOH HOH B . H 5 HOH 53 1105 1105 HOH HOH B . H 5 HOH 54 1112 1112 HOH HOH B . H 5 HOH 55 1113 1113 HOH HOH B . H 5 HOH 56 1115 1115 HOH HOH B . H 5 HOH 57 1116 1116 HOH HOH B . H 5 HOH 58 1117 1117 HOH HOH B . H 5 HOH 59 1119 1119 HOH HOH B . H 5 HOH 60 1120 1120 HOH HOH B . H 5 HOH 61 1121 1121 HOH HOH B . H 5 HOH 62 1124 1124 HOH HOH B . H 5 HOH 63 1128 1128 HOH HOH B . H 5 HOH 64 1131 1131 HOH HOH B . H 5 HOH 65 1132 1132 HOH HOH B . H 5 HOH 66 1136 1136 HOH HOH B . H 5 HOH 67 1137 1137 HOH HOH B . H 5 HOH 68 1140 1140 HOH HOH B . H 5 HOH 69 1143 1143 HOH HOH B . H 5 HOH 70 1148 1148 HOH HOH B . H 5 HOH 71 1150 1150 HOH HOH B . H 5 HOH 72 1152 1152 HOH HOH B . H 5 HOH 73 1153 1153 HOH HOH B . H 5 HOH 74 1154 1154 HOH HOH B . H 5 HOH 75 1156 1156 HOH HOH B . H 5 HOH 76 1157 1157 HOH HOH B . H 5 HOH 77 1159 1159 HOH HOH B . H 5 HOH 78 1160 1160 HOH HOH B . H 5 HOH 79 1162 1162 HOH HOH B . H 5 HOH 80 1163 1163 HOH HOH B . H 5 HOH 81 1164 1164 HOH HOH B . H 5 HOH 82 1165 1165 HOH HOH B . H 5 HOH 83 1166 1166 HOH HOH B . H 5 HOH 84 1171 1171 HOH HOH B . H 5 HOH 85 1174 1174 HOH HOH B . H 5 HOH 86 1178 1178 HOH HOH B . H 5 HOH 87 1179 1179 HOH HOH B . H 5 HOH 88 1180 1180 HOH HOH B . H 5 HOH 89 1181 1181 HOH HOH B . H 5 HOH 90 1182 1182 HOH HOH B . H 5 HOH 91 1185 1185 HOH HOH B . H 5 HOH 92 1187 1187 HOH HOH B . H 5 HOH 93 1189 1189 HOH HOH B . H 5 HOH 94 1194 1194 HOH HOH B . H 5 HOH 95 1198 1198 HOH HOH B . H 5 HOH 96 1199 1199 HOH HOH B . H 5 HOH 97 1203 1203 HOH HOH B . H 5 HOH 98 1206 1206 HOH HOH B . H 5 HOH 99 1207 1207 HOH HOH B . H 5 HOH 100 1208 1208 HOH HOH B . H 5 HOH 101 1209 1209 HOH HOH B . H 5 HOH 102 1211 1211 HOH HOH B . H 5 HOH 103 1213 1213 HOH HOH B . H 5 HOH 104 1215 1215 HOH HOH B . H 5 HOH 105 1217 1217 HOH HOH B . H 5 HOH 106 1218 1218 HOH HOH B . H 5 HOH 107 1220 1220 HOH HOH B . H 5 HOH 108 1222 1222 HOH HOH B . H 5 HOH 109 1223 1223 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELX 'model building' . ? 1 SHELXL-97 refinement . ? 2 HKL-2000 'data collection' . ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 SHELX phasing . ? 6 # _cell.entry_id 3D1Y _cell.length_a 58.720 _cell.length_b 85.940 _cell.length_c 46.380 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3D1Y _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3D1Y _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.73 _exptl_crystal.density_percent_sol 54.90 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.4 _exptl_crystal_grow.pdbx_details 'SODIUM ACETATE BUFFER, 1M NaCl, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 95.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2007-06-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator SI _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength 1.00 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3D1Y _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 4 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.05 _reflns.number_obs 83460 _reflns.number_all 101144 _reflns.percent_possible_obs 82.5 _reflns.pdbx_Rmerge_I_obs 0.1 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.05 _reflns_shell.d_res_low 1.09 _reflns_shell.percent_possible_all 92.5 _reflns_shell.Rmerge_I_obs 0.42 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy 1.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3D1Y _refine.ls_number_reflns_obs 83460 _refine.ls_number_reflns_all 101144 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 1.05 _refine.ls_percent_reflns_obs 82.5 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.15 _refine.ls_R_factor_R_free 0.1736 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 5052 _refine.ls_number_parameters 16779 _refine.ls_number_restraints 21249 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details 'ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF)' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3D1Y _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 17 _refine_analyze.occupancy_sum_hydrogen 1614.00 _refine_analyze.occupancy_sum_non_hydrogen 1782.00 _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1510 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 52 _refine_hist.number_atoms_solvent 223 _refine_hist.number_atoms_total 1785 _refine_hist.d_res_high 1.05 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.017 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.033 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0286 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.085 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.096 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.084 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.056 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.090 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 3D1Y _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.1488 _pdbx_refine.free_R_factor_no_cutoff 0.1736 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.0 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 5052 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.1375 _pdbx_refine.free_R_factor_4sig_cutoff 0.1627 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.0 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 4156 _pdbx_refine.number_reflns_obs_4sig_cutoff 83460 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3D1Y _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 3D1Y _struct.title 'Crystal structure of HIV-1 mutant I54V and inhibitor SAQUINA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3D1Y _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text ;DRUG RESISTANCE, HIV-1, I54V, flap mutant, AIDS, Aspartyl protease, Capsid maturation, Capsid protein, Protease, hydrolase-hydrolase inhibitor complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 3 ? G N N 5 ? H N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_HV1B5 _struct_ref.pdbx_db_accession P04587 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _struct_ref.pdbx_align_begin 501 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3D1Y A 1 ? 99 ? P04587 501 ? 599 ? 1 99 2 1 3D1Y B 1 ? 99 ? P04587 501 ? 599 ? 101 199 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3D1Y LYS A 7 ? UNP P04587 GLN 507 'SEE REMARK 999' 7 1 1 3D1Y ILE A 33 ? UNP P04587 LEU 533 'SEE REMARK 999' 33 2 1 3D1Y VAL A 54 ? UNP P04587 ILE 554 'engineered mutation' 54 3 1 3D1Y ILE A 63 ? UNP P04587 LEU 563 'SEE REMARK 999' 63 4 1 3D1Y ALA A 67 ? UNP P04587 CYS 567 'SEE REMARK 999' 67 5 1 3D1Y ALA A 95 ? UNP P04587 CYS 595 'SEE REMARK 999' 95 6 2 3D1Y LYS B 7 ? UNP P04587 GLN 507 'SEE REMARK 999' 107 7 2 3D1Y ILE B 33 ? UNP P04587 LEU 533 'SEE REMARK 999' 133 8 2 3D1Y VAL B 54 ? UNP P04587 ILE 554 'engineered mutation' 154 9 2 3D1Y ILE B 63 ? UNP P04587 LEU 563 'SEE REMARK 999' 163 10 2 3D1Y ALA B 67 ? UNP P04587 CYS 567 'SEE REMARK 999' 167 11 2 3D1Y ALA B 95 ? UNP P04587 CYS 595 'SEE REMARK 999' 195 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5470 ? 1 MORE -52 ? 1 'SSA (A^2)' 9600 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? THR A 91 ? GLY A 86 THR A 91 1 ? 6 HELX_P HELX_P2 2 GLN A 92 ? GLY A 94 ? GLN A 92 GLY A 94 5 ? 3 HELX_P HELX_P3 3 GLY B 86 ? THR B 91 ? GLY B 186 THR B 191 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? ILE A 3 ? GLN A 2 ILE A 3 A 2 THR B 96 ? ASN B 98 ? THR B 196 ASN B 198 A 3 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 A 4 GLN B 2 ? ILE B 3 ? GLN B 102 ILE B 103 B 1 TRP A 42 ? GLY A 49 ? TRP A 42 GLY A 49 B 2 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 B 3 HIS A 69 ? VAL A 77 ? HIS A 69 VAL A 77 B 4 VAL A 32 ? ILE A 33 ? VAL A 32 ILE A 33 B 5 ILE A 84 ? ILE A 85 ? ILE A 84 ILE A 85 B 6 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 B 7 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 8 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 C 1 LYS B 43 ? GLY B 49 ? LYS B 143 GLY B 149 C 2 GLY B 52 ? ILE B 66 ? GLY B 152 ILE B 166 C 3 HIS B 69 ? VAL B 77 ? HIS B 169 VAL B 177 C 4 VAL B 32 ? ILE B 33 ? VAL B 132 ILE B 133 C 5 ILE B 84 ? ILE B 85 ? ILE B 184 ILE B 185 C 6 GLN B 18 ? LEU B 24 ? GLN B 118 LEU B 124 C 7 LEU B 10 ? ILE B 15 ? LEU B 110 ILE B 115 C 8 GLY B 52 ? ILE B 66 ? GLY B 152 ILE B 166 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 3 ? N ILE A 3 O LEU B 97 ? O LEU B 197 A 2 3 O THR B 96 ? O THR B 196 N ASN A 98 ? N ASN A 98 A 3 4 N LEU A 97 ? N LEU A 97 O ILE B 3 ? O ILE B 103 B 1 2 N LYS A 43 ? N LYS A 43 O GLN A 58 ? O GLN A 58 B 2 3 N ILE A 66 ? N ILE A 66 O HIS A 69 ? O HIS A 69 B 3 4 O LEU A 76 ? O LEU A 76 N ILE A 33 ? N ILE A 33 B 4 5 N VAL A 32 ? N VAL A 32 O ILE A 84 ? O ILE A 84 B 5 6 O ILE A 85 ? O ILE A 85 N LEU A 23 ? N LEU A 23 B 6 7 O LYS A 20 ? O LYS A 20 N ILE A 13 ? N ILE A 13 B 7 8 N LYS A 14 ? N LYS A 14 O GLU A 65 ? O GLU A 65 C 1 2 N LYS B 43 ? N LYS B 143 O GLN B 58 ? O GLN B 158 C 2 3 N TYR B 59 ? N TYR B 159 O VAL B 75 ? O VAL B 175 C 3 4 O LEU B 76 ? O LEU B 176 N ILE B 33 ? N ILE B 133 C 4 5 N VAL B 32 ? N VAL B 132 O ILE B 84 ? O ILE B 184 C 5 6 O ILE B 85 ? O ILE B 185 N LEU B 23 ? N LEU B 123 C 6 7 O LYS B 20 ? O LYS B 120 N ILE B 13 ? N ILE B 113 C 7 8 N LYS B 14 ? N LYS B 114 O GLU B 65 ? O GLU B 165 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 801 ? 1 'BINDING SITE FOR RESIDUE NA A 801' AC2 Software A CL 802 ? 3 'BINDING SITE FOR RESIDUE CL A 802' AC3 Software A ROC 201 ? 17 'BINDING SITE FOR RESIDUE ROC A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 ASP A 60 ? ASP A 60 . ? 1_555 ? 2 AC2 3 THR A 74 ? THR A 74 . ? 1_555 ? 3 AC2 3 ASN A 88 ? ASN A 88 . ? 1_555 ? 4 AC2 3 ARG B 41 ? ARG B 141 . ? 3_556 ? 5 AC3 17 ASP A 25 ? ASP A 25 . ? 1_555 ? 6 AC3 17 GLY A 27 ? GLY A 27 . ? 1_555 ? 7 AC3 17 ALA A 28 ? ALA A 28 . ? 1_555 ? 8 AC3 17 ASP A 29 ? ASP A 29 . ? 1_555 ? 9 AC3 17 ASP A 30 ? ASP A 30 . ? 1_555 ? 10 AC3 17 GLY A 48 ? GLY A 48 . ? 1_555 ? 11 AC3 17 GLY A 49 ? GLY A 49 . ? 1_555 ? 12 AC3 17 ILE A 50 ? ILE A 50 . ? 1_555 ? 13 AC3 17 PRO A 81 ? PRO A 81 . ? 1_555 ? 14 AC3 17 ARG B 8 ? ARG B 108 . ? 1_555 ? 15 AC3 17 ASP B 25 ? ASP B 125 . ? 1_555 ? 16 AC3 17 GLY B 27 ? GLY B 127 . ? 1_555 ? 17 AC3 17 GLY B 48 ? GLY B 148 . ? 1_555 ? 18 AC3 17 GLY B 49 ? GLY B 149 . ? 1_555 ? 19 AC3 17 ILE B 50 ? ILE B 150 . ? 1_555 ? 20 AC3 17 PRO B 81 ? PRO B 181 . ? 1_555 ? 21 AC3 17 ILE B 84 ? ILE B 184 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 8 ? ? CZ A ARG 8 ? ? NH1 A ARG 8 ? ? 124.16 120.30 3.86 0.50 N 2 1 CD A ARG 57 ? ? NE A ARG 57 ? ? CZ A ARG 57 ? ? 145.76 123.60 22.16 1.40 N 3 1 NE A ARG 57 ? ? CZ A ARG 57 ? ? NH1 A ARG 57 ? ? 123.68 120.30 3.38 0.50 N 4 1 CD B LYS 107 ? B CE B LYS 107 ? B NZ B LYS 107 ? B 126.72 111.70 15.02 2.30 N 5 1 CB B ASP 125 ? ? CG B ASP 125 ? ? OD2 B ASP 125 ? ? 112.28 118.30 -6.02 0.90 N 6 1 NE B ARG 141 ? ? CZ B ARG 141 ? ? NH2 B ARG 141 ? ? 117.27 120.30 -3.03 0.50 N 7 1 CD B ARG 157 ? ? NE B ARG 157 ? ? CZ B ARG 157 ? ? 132.86 123.60 9.26 1.40 N 8 1 NE B ARG 157 ? ? CZ B ARG 157 ? ? NH2 B ARG 157 ? ? 115.70 120.30 -4.60 0.50 N 9 1 CB B ASP 160 ? ? CG B ASP 160 ? ? OD1 B ASP 160 ? ? 123.75 118.30 5.45 0.90 N 10 1 C B PRO 181 ? B N B VAL 182 ? ? CA B VAL 182 ? ? 141.20 121.70 19.50 2.50 Y 11 1 NE B ARG 187 ? ? CZ B ARG 187 ? ? NH1 B ARG 187 ? ? 123.49 120.30 3.19 0.50 N # _pdbx_molecule_features.prd_id PRD_000454 _pdbx_molecule_features.name Saquinavir _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000454 _pdbx_molecule.asym_id E # _pdbx_entry_details.entry_id 3D1Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;THE INHIBITOR ROC IS A HYDROXYETHYLAMINE CONTAINING TRANSITION STATE MIMETIC. ; _pdbx_entry_details.sequence_details ;MUTATIONS Q7K, L33I, L63I, C67A, C95A, HAVE BEEN MADE TO STABILIZE THE PROTEASE FROM AUTOPROTEOLYSIS, WHILE RETAINING ACTIVITY SIMILAR TO WILD-TYPE HIV-1 PROTEASE ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 HIS N N N N 138 HIS CA C N S 139 HIS C C N N 140 HIS O O N N 141 HIS CB C N N 142 HIS CG C Y N 143 HIS ND1 N Y N 144 HIS CD2 C Y N 145 HIS CE1 C Y N 146 HIS NE2 N Y N 147 HIS OXT O N N 148 HIS H H N N 149 HIS H2 H N N 150 HIS HA H N N 151 HIS HB2 H N N 152 HIS HB3 H N N 153 HIS HD1 H N N 154 HIS HD2 H N N 155 HIS HE1 H N N 156 HIS HE2 H N N 157 HIS HXT H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 ILE N N N N 162 ILE CA C N S 163 ILE C C N N 164 ILE O O N N 165 ILE CB C N S 166 ILE CG1 C N N 167 ILE CG2 C N N 168 ILE CD1 C N N 169 ILE OXT O N N 170 ILE H H N N 171 ILE H2 H N N 172 ILE HA H N N 173 ILE HB H N N 174 ILE HG12 H N N 175 ILE HG13 H N N 176 ILE HG21 H N N 177 ILE HG22 H N N 178 ILE HG23 H N N 179 ILE HD11 H N N 180 ILE HD12 H N N 181 ILE HD13 H N N 182 ILE HXT H N N 183 LEU N N N N 184 LEU CA C N S 185 LEU C C N N 186 LEU O O N N 187 LEU CB C N N 188 LEU CG C N N 189 LEU CD1 C N N 190 LEU CD2 C N N 191 LEU OXT O N N 192 LEU H H N N 193 LEU H2 H N N 194 LEU HA H N N 195 LEU HB2 H N N 196 LEU HB3 H N N 197 LEU HG H N N 198 LEU HD11 H N N 199 LEU HD12 H N N 200 LEU HD13 H N N 201 LEU HD21 H N N 202 LEU HD22 H N N 203 LEU HD23 H N N 204 LEU HXT H N N 205 LYS N N N N 206 LYS CA C N S 207 LYS C C N N 208 LYS O O N N 209 LYS CB C N N 210 LYS CG C N N 211 LYS CD C N N 212 LYS CE C N N 213 LYS NZ N N N 214 LYS OXT O N N 215 LYS H H N N 216 LYS H2 H N N 217 LYS HA H N N 218 LYS HB2 H N N 219 LYS HB3 H N N 220 LYS HG2 H N N 221 LYS HG3 H N N 222 LYS HD2 H N N 223 LYS HD3 H N N 224 LYS HE2 H N N 225 LYS HE3 H N N 226 LYS HZ1 H N N 227 LYS HZ2 H N N 228 LYS HZ3 H N N 229 LYS HXT H N N 230 MET N N N N 231 MET CA C N S 232 MET C C N N 233 MET O O N N 234 MET CB C N N 235 MET CG C N N 236 MET SD S N N 237 MET CE C N N 238 MET OXT O N N 239 MET H H N N 240 MET H2 H N N 241 MET HA H N N 242 MET HB2 H N N 243 MET HB3 H N N 244 MET HG2 H N N 245 MET HG3 H N N 246 MET HE1 H N N 247 MET HE2 H N N 248 MET HE3 H N N 249 MET HXT H N N 250 NA NA NA N N 251 PHE N N N N 252 PHE CA C N S 253 PHE C C N N 254 PHE O O N N 255 PHE CB C N N 256 PHE CG C Y N 257 PHE CD1 C Y N 258 PHE CD2 C Y N 259 PHE CE1 C Y N 260 PHE CE2 C Y N 261 PHE CZ C Y N 262 PHE OXT O N N 263 PHE H H N N 264 PHE H2 H N N 265 PHE HA H N N 266 PHE HB2 H N N 267 PHE HB3 H N N 268 PHE HD1 H N N 269 PHE HD2 H N N 270 PHE HE1 H N N 271 PHE HE2 H N N 272 PHE HZ H N N 273 PHE HXT H N N 274 PRO N N N N 275 PRO CA C N S 276 PRO C C N N 277 PRO O O N N 278 PRO CB C N N 279 PRO CG C N N 280 PRO CD C N N 281 PRO OXT O N N 282 PRO H H N N 283 PRO HA H N N 284 PRO HB2 H N N 285 PRO HB3 H N N 286 PRO HG2 H N N 287 PRO HG3 H N N 288 PRO HD2 H N N 289 PRO HD3 H N N 290 PRO HXT H N N 291 ROC C C N N 292 ROC O O N N 293 ROC N1 N Y N 294 ROC C2 C Y N 295 ROC C3 C Y N 296 ROC C4 C Y N 297 ROC C5 C Y N 298 ROC C6 C Y N 299 ROC C7 C Y N 300 ROC C8 C Y N 301 ROC C4A C Y N 302 ROC C8A C Y N 303 ROC N N N N 304 ROC CA C N S 305 ROC C1 C N N 306 ROC O1 O N N 307 ROC CB C N N 308 ROC CG C N N 309 ROC OD1 O N N 310 ROC ND2 N N N 311 ROC C9 C N R 312 ROC O2 O N N 313 ROC CA1 C N S 314 ROC N2 N N N 315 ROC CB1 C N N 316 ROC CG1 C Y N 317 ROC CD1 C Y N 318 ROC CD2 C Y N 319 ROC CE1 C Y N 320 ROC CE2 C Y N 321 ROC CZ C Y N 322 ROC N11 N N N 323 ROC CM C N N 324 ROC C21 C N S 325 ROC CC C N N 326 ROC O3 O N N 327 ROC C31 C N N 328 ROC C3A C N S 329 ROC C41 C N N 330 ROC C51 C N N 331 ROC C61 C N N 332 ROC C71 C N N 333 ROC C7A C N S 334 ROC C81 C N N 335 ROC N3 N N N 336 ROC CD C N N 337 ROC C11 C N N 338 ROC C22 C N N 339 ROC C32 C N N 340 ROC H3 H N N 341 ROC H4 H N N 342 ROC H5 H N N 343 ROC H6 H N N 344 ROC H7 H N N 345 ROC H8 H N N 346 ROC H H N N 347 ROC HA H N N 348 ROC HB2 H N N 349 ROC HB3 H N N 350 ROC HD21 H N N 351 ROC HD22 H N N 352 ROC HC H N N 353 ROC HO H N N 354 ROC HA1 H N N 355 ROC H1 H N N 356 ROC HB21 H N N 357 ROC HB31 H N N 358 ROC HD1 H N N 359 ROC HD2 H N N 360 ROC HE1 H N N 361 ROC HE2 H N N 362 ROC HZ H N N 363 ROC HM1 H N N 364 ROC HM2 H N N 365 ROC H2 H N N 366 ROC H31 H N N 367 ROC H32 H N N 368 ROC H3A H N N 369 ROC H41 H N N 370 ROC H42 H N N 371 ROC H51 H N N 372 ROC H52 H N N 373 ROC H61 H N N 374 ROC H62 H N N 375 ROC H71 H N N 376 ROC H72 H N N 377 ROC H7A H N N 378 ROC H81 H N N 379 ROC H82 H N N 380 ROC HN1 H N N 381 ROC H11 H N N 382 ROC H12 H N N 383 ROC H13 H N N 384 ROC H21 H N N 385 ROC H22 H N N 386 ROC H23 H N N 387 ROC H311 H N N 388 ROC H321 H N N 389 ROC H33 H N N 390 SER N N N N 391 SER CA C N S 392 SER C C N N 393 SER O O N N 394 SER CB C N N 395 SER OG O N N 396 SER OXT O N N 397 SER H H N N 398 SER H2 H N N 399 SER HA H N N 400 SER HB2 H N N 401 SER HB3 H N N 402 SER HG H N N 403 SER HXT H N N 404 THR N N N N 405 THR CA C N S 406 THR C C N N 407 THR O O N N 408 THR CB C N R 409 THR OG1 O N N 410 THR CG2 C N N 411 THR OXT O N N 412 THR H H N N 413 THR H2 H N N 414 THR HA H N N 415 THR HB H N N 416 THR HG1 H N N 417 THR HG21 H N N 418 THR HG22 H N N 419 THR HG23 H N N 420 THR HXT H N N 421 TRP N N N N 422 TRP CA C N S 423 TRP C C N N 424 TRP O O N N 425 TRP CB C N N 426 TRP CG C Y N 427 TRP CD1 C Y N 428 TRP CD2 C Y N 429 TRP NE1 N Y N 430 TRP CE2 C Y N 431 TRP CE3 C Y N 432 TRP CZ2 C Y N 433 TRP CZ3 C Y N 434 TRP CH2 C Y N 435 TRP OXT O N N 436 TRP H H N N 437 TRP H2 H N N 438 TRP HA H N N 439 TRP HB2 H N N 440 TRP HB3 H N N 441 TRP HD1 H N N 442 TRP HE1 H N N 443 TRP HE3 H N N 444 TRP HZ2 H N N 445 TRP HZ3 H N N 446 TRP HH2 H N N 447 TRP HXT H N N 448 TYR N N N N 449 TYR CA C N S 450 TYR C C N N 451 TYR O O N N 452 TYR CB C N N 453 TYR CG C Y N 454 TYR CD1 C Y N 455 TYR CD2 C Y N 456 TYR CE1 C Y N 457 TYR CE2 C Y N 458 TYR CZ C Y N 459 TYR OH O N N 460 TYR OXT O N N 461 TYR H H N N 462 TYR H2 H N N 463 TYR HA H N N 464 TYR HB2 H N N 465 TYR HB3 H N N 466 TYR HD1 H N N 467 TYR HD2 H N N 468 TYR HE1 H N N 469 TYR HE2 H N N 470 TYR HH H N N 471 TYR HXT H N N 472 VAL N N N N 473 VAL CA C N S 474 VAL C C N N 475 VAL O O N N 476 VAL CB C N N 477 VAL CG1 C N N 478 VAL CG2 C N N 479 VAL OXT O N N 480 VAL H H N N 481 VAL H2 H N N 482 VAL HA H N N 483 VAL HB H N N 484 VAL HG11 H N N 485 VAL HG12 H N N 486 VAL HG13 H N N 487 VAL HG21 H N N 488 VAL HG22 H N N 489 VAL HG23 H N N 490 VAL HXT H N N 491 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 ROC O C doub N N 277 ROC C C2 sing N N 278 ROC N1 C2 doub Y N 279 ROC N1 C8A sing Y N 280 ROC C2 C3 sing Y N 281 ROC C3 C4 doub Y N 282 ROC C3 H3 sing N N 283 ROC C4 C4A sing Y N 284 ROC C4 H4 sing N N 285 ROC C4A C5 doub Y N 286 ROC C4A C8A sing Y N 287 ROC C5 C6 sing Y N 288 ROC C5 H5 sing N N 289 ROC C6 C7 doub Y N 290 ROC C6 H6 sing N N 291 ROC C7 C8 sing Y N 292 ROC C7 H7 sing N N 293 ROC C8 C8A doub Y N 294 ROC C8 H8 sing N N 295 ROC N CA sing N N 296 ROC N H sing N N 297 ROC CA C1 sing N N 298 ROC CA CB sing N N 299 ROC CA HA sing N N 300 ROC C1 O1 doub N N 301 ROC CB CG sing N N 302 ROC CB HB2 sing N N 303 ROC CB HB3 sing N N 304 ROC CG OD1 doub N N 305 ROC CG ND2 sing N N 306 ROC ND2 HD21 sing N N 307 ROC ND2 HD22 sing N N 308 ROC C9 O2 sing N N 309 ROC C9 CA1 sing N N 310 ROC C9 HC sing N N 311 ROC O2 HO sing N N 312 ROC CA1 N2 sing N N 313 ROC CA1 CB1 sing N N 314 ROC CA1 HA1 sing N N 315 ROC N2 H1 sing N N 316 ROC CB1 CG1 sing N N 317 ROC CB1 HB21 sing N N 318 ROC CB1 HB31 sing N N 319 ROC CG1 CD1 doub Y N 320 ROC CG1 CD2 sing Y N 321 ROC CD1 CE1 sing Y N 322 ROC CD1 HD1 sing N N 323 ROC CD2 CE2 doub Y N 324 ROC CD2 HD2 sing N N 325 ROC CE1 CZ doub Y N 326 ROC CE1 HE1 sing N N 327 ROC CE2 CZ sing Y N 328 ROC CE2 HE2 sing N N 329 ROC CZ HZ sing N N 330 ROC N11 CM sing N N 331 ROC N11 C21 sing N N 332 ROC N11 C81 sing N N 333 ROC CM HM1 sing N N 334 ROC CM HM2 sing N N 335 ROC C21 CC sing N N 336 ROC C21 C31 sing N N 337 ROC C21 H2 sing N N 338 ROC CC O3 doub N N 339 ROC C31 C3A sing N N 340 ROC C31 H31 sing N N 341 ROC C31 H32 sing N N 342 ROC C3A C41 sing N N 343 ROC C3A C7A sing N N 344 ROC C3A H3A sing N N 345 ROC C41 C51 sing N N 346 ROC C41 H41 sing N N 347 ROC C41 H42 sing N N 348 ROC C51 C61 sing N N 349 ROC C51 H51 sing N N 350 ROC C51 H52 sing N N 351 ROC C61 C71 sing N N 352 ROC C61 H61 sing N N 353 ROC C61 H62 sing N N 354 ROC C71 C7A sing N N 355 ROC C71 H71 sing N N 356 ROC C71 H72 sing N N 357 ROC C7A C81 sing N N 358 ROC C7A H7A sing N N 359 ROC C81 H81 sing N N 360 ROC C81 H82 sing N N 361 ROC N3 CD sing N N 362 ROC N3 HN1 sing N N 363 ROC CD C11 sing N N 364 ROC CD C22 sing N N 365 ROC CD C32 sing N N 366 ROC C11 H11 sing N N 367 ROC C11 H12 sing N N 368 ROC C11 H13 sing N N 369 ROC C22 H21 sing N N 370 ROC C22 H22 sing N N 371 ROC C22 H23 sing N N 372 ROC C32 H311 sing N N 373 ROC C32 H321 sing N N 374 ROC C32 H33 sing N N 375 ROC C N sing N N 376 ROC C1 N2 sing N N 377 ROC C9 CM sing N N 378 ROC CC N3 sing N N 379 SER N CA sing N N 380 SER N H sing N N 381 SER N H2 sing N N 382 SER CA C sing N N 383 SER CA CB sing N N 384 SER CA HA sing N N 385 SER C O doub N N 386 SER C OXT sing N N 387 SER CB OG sing N N 388 SER CB HB2 sing N N 389 SER CB HB3 sing N N 390 SER OG HG sing N N 391 SER OXT HXT sing N N 392 THR N CA sing N N 393 THR N H sing N N 394 THR N H2 sing N N 395 THR CA C sing N N 396 THR CA CB sing N N 397 THR CA HA sing N N 398 THR C O doub N N 399 THR C OXT sing N N 400 THR CB OG1 sing N N 401 THR CB CG2 sing N N 402 THR CB HB sing N N 403 THR OG1 HG1 sing N N 404 THR CG2 HG21 sing N N 405 THR CG2 HG22 sing N N 406 THR CG2 HG23 sing N N 407 THR OXT HXT sing N N 408 TRP N CA sing N N 409 TRP N H sing N N 410 TRP N H2 sing N N 411 TRP CA C sing N N 412 TRP CA CB sing N N 413 TRP CA HA sing N N 414 TRP C O doub N N 415 TRP C OXT sing N N 416 TRP CB CG sing N N 417 TRP CB HB2 sing N N 418 TRP CB HB3 sing N N 419 TRP CG CD1 doub Y N 420 TRP CG CD2 sing Y N 421 TRP CD1 NE1 sing Y N 422 TRP CD1 HD1 sing N N 423 TRP CD2 CE2 doub Y N 424 TRP CD2 CE3 sing Y N 425 TRP NE1 CE2 sing Y N 426 TRP NE1 HE1 sing N N 427 TRP CE2 CZ2 sing Y N 428 TRP CE3 CZ3 doub Y N 429 TRP CE3 HE3 sing N N 430 TRP CZ2 CH2 doub Y N 431 TRP CZ2 HZ2 sing N N 432 TRP CZ3 CH2 sing Y N 433 TRP CZ3 HZ3 sing N N 434 TRP CH2 HH2 sing N N 435 TRP OXT HXT sing N N 436 TYR N CA sing N N 437 TYR N H sing N N 438 TYR N H2 sing N N 439 TYR CA C sing N N 440 TYR CA CB sing N N 441 TYR CA HA sing N N 442 TYR C O doub N N 443 TYR C OXT sing N N 444 TYR CB CG sing N N 445 TYR CB HB2 sing N N 446 TYR CB HB3 sing N N 447 TYR CG CD1 doub Y N 448 TYR CG CD2 sing Y N 449 TYR CD1 CE1 sing Y N 450 TYR CD1 HD1 sing N N 451 TYR CD2 CE2 doub Y N 452 TYR CD2 HD2 sing N N 453 TYR CE1 CZ doub Y N 454 TYR CE1 HE1 sing N N 455 TYR CE2 CZ sing Y N 456 TYR CE2 HE2 sing N N 457 TYR CZ OH sing N N 458 TYR OH HH sing N N 459 TYR OXT HXT sing N N 460 VAL N CA sing N N 461 VAL N H sing N N 462 VAL N H2 sing N N 463 VAL CA C sing N N 464 VAL CA CB sing N N 465 VAL CA HA sing N N 466 VAL C O doub N N 467 VAL C OXT sing N N 468 VAL CB CG1 sing N N 469 VAL CB CG2 sing N N 470 VAL CB HB sing N N 471 VAL CG1 HG11 sing N N 472 VAL CG1 HG12 sing N N 473 VAL CG1 HG13 sing N N 474 VAL CG2 HG21 sing N N 475 VAL CG2 HG22 sing N N 476 VAL CG2 HG23 sing N N 477 VAL OXT HXT sing N N 478 # _atom_sites.entry_id 3D1Y _atom_sites.fract_transf_matrix[1][1] 0.017030 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011636 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021561 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N NA O S # loop_