HEADER PEPTIDOGLYCAN-BINDING PROTEIN 09-MAY-08 3D30 TITLE STRUCTURE OF AN EXPANSIN LIKE PROTEIN FROM BACILLUS SUBTILIS AT 1.9A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXPANSIN LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: YOAJ; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YOAJ, BSU18630; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3-PLYS); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS BACILLUS SUBTILIS, EXPANSIN, PEPTIDOGLYCAN ASSOCIATED PROTEIN, KEYWDS 2 UNKNOWN FUNCTION, MLTA, BACTERIA AUTOLYSIS, PEPTIDOGLYCAN-BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.KERFF,S.PETRELLA,R.HERMAN,E.SAUVAGE,B.JORIS,P.CHARLIER REVDAT 4 30-AUG-23 3D30 1 REMARK SEQADV REVDAT 3 13-JUL-11 3D30 1 VERSN REVDAT 2 20-JAN-09 3D30 1 JRNL VERSN REVDAT 1 14-OCT-08 3D30 0 JRNL AUTH F.KERFF,A.AMOROSO,R.HERMAN,E.SAUVAGE,S.PETRELLA,P.FILEE, JRNL AUTH 2 P.CHARLIER,B.JORIS,A.TABUCHI,N.NIKOLAIDIS,D.J.COSGROVE JRNL TITL CRYSTAL STRUCTURE AND ACTIVITY OF BACILLUS SUBTILIS YOAJ JRNL TITL 2 (EXLX1), A BACTERIAL EXPANSIN THAT PROMOTES ROOT JRNL TITL 3 COLONIZATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 16876 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18971341 JRNL DOI 10.1073/PNAS.0809382105 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 36971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1951 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2617 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1625 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 230 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.542 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1736 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2356 ; 1.517 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 225 ; 6.439 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;34.284 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 301 ;15.099 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;17.655 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 251 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1311 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 820 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1187 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 189 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.153 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.255 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1093 ; 2.291 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1730 ; 3.053 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 740 ; 2.998 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 619 ; 4.140 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 10 REMARK 3 ORIGIN FOR THE GROUP (A): -45.0230 26.8300 8.1120 REMARK 3 T TENSOR REMARK 3 T11: -0.0582 T22: -0.2156 REMARK 3 T33: 0.0839 T12: 0.0792 REMARK 3 T13: -0.0969 T23: 0.1566 REMARK 3 L TENSOR REMARK 3 L11: 92.0186 L22: 17.7657 REMARK 3 L33: 8.3647 L12: 17.4920 REMARK 3 L13: -14.7197 L23: -3.4288 REMARK 3 S TENSOR REMARK 3 S11: 0.2810 S12: -2.7809 S13: -1.2227 REMARK 3 S21: 1.0421 S22: -0.6046 S23: -1.6117 REMARK 3 S31: -0.0894 S32: 0.5123 S33: 0.3236 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): -52.5250 35.4820 0.2460 REMARK 3 T TENSOR REMARK 3 T11: -0.0942 T22: -0.1324 REMARK 3 T33: -0.0480 T12: -0.0018 REMARK 3 T13: -0.0066 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.5789 L22: 2.3079 REMARK 3 L33: 0.7475 L12: 1.4576 REMARK 3 L13: 0.3997 L23: 0.1993 REMARK 3 S TENSOR REMARK 3 S11: -0.0077 S12: 0.0186 S13: -0.3250 REMARK 3 S21: 0.0255 S22: -0.0293 S23: -0.1841 REMARK 3 S31: 0.0964 S32: 0.0542 S33: 0.0370 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): -56.6670 34.7890 11.8140 REMARK 3 T TENSOR REMARK 3 T11: -0.0576 T22: -0.1253 REMARK 3 T33: -0.1090 T12: -0.0870 REMARK 3 T13: -0.0307 T23: 0.0817 REMARK 3 L TENSOR REMARK 3 L11: 12.3397 L22: 18.8271 REMARK 3 L33: 11.1665 L12: 1.0747 REMARK 3 L13: -9.5226 L23: 7.6278 REMARK 3 S TENSOR REMARK 3 S11: 0.0027 S12: -0.8762 S13: 0.3049 REMARK 3 S21: 1.1598 S22: -0.0138 S23: -0.1983 REMARK 3 S31: 0.1375 S32: -0.3957 S33: 0.0111 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 101 REMARK 3 ORIGIN FOR THE GROUP (A): -60.0900 25.2530 0.0000 REMARK 3 T TENSOR REMARK 3 T11: -0.0708 T22: -0.2012 REMARK 3 T33: 0.0779 T12: 0.0139 REMARK 3 T13: 0.0131 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 5.4103 L22: 3.4225 REMARK 3 L33: 1.7143 L12: 0.7119 REMARK 3 L13: 0.2584 L23: -0.4808 REMARK 3 S TENSOR REMARK 3 S11: -0.1195 S12: 0.1329 S13: -0.6909 REMARK 3 S21: -0.0409 S22: -0.0116 S23: -0.0227 REMARK 3 S31: 0.1457 S32: -0.1130 S33: 0.1312 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 102 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): -44.8180 27.4590 1.7160 REMARK 3 T TENSOR REMARK 3 T11: -0.1223 T22: -0.2288 REMARK 3 T33: 0.1811 T12: 0.1007 REMARK 3 T13: -0.0149 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 16.6562 L22: 5.1202 REMARK 3 L33: 12.5121 L12: 6.9563 REMARK 3 L13: -3.8133 L23: -5.6705 REMARK 3 S TENSOR REMARK 3 S11: -0.2599 S12: -0.3018 S13: -1.2585 REMARK 3 S21: -0.2676 S22: -0.0477 S23: -0.9734 REMARK 3 S31: 0.5486 S32: 0.3295 S33: 0.3076 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): -39.1660 52.0020 -0.1880 REMARK 3 T TENSOR REMARK 3 T11: -0.1406 T22: -0.0661 REMARK 3 T33: -0.0463 T12: -0.0291 REMARK 3 T13: -0.0382 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.2868 L22: 2.9623 REMARK 3 L33: 1.0878 L12: 0.4216 REMARK 3 L13: -0.3817 L23: 0.3273 REMARK 3 S TENSOR REMARK 3 S11: 0.0605 S12: 0.0012 S13: -0.0839 REMARK 3 S21: 0.1200 S22: -0.0809 S23: -0.2996 REMARK 3 S31: -0.0231 S32: 0.1697 S33: 0.0204 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 196 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): -39.9200 48.0470 -8.3740 REMARK 3 T TENSOR REMARK 3 T11: -0.2218 T22: -0.1113 REMARK 3 T33: -0.1292 T12: -0.0602 REMARK 3 T13: 0.0198 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 7.9417 L22: 6.9293 REMARK 3 L33: 4.7946 L12: -4.3221 REMARK 3 L13: -0.2735 L23: 1.3486 REMARK 3 S TENSOR REMARK 3 S11: 0.1958 S12: 0.5285 S13: -0.0671 REMARK 3 S21: -0.5124 S22: -0.2312 S23: -0.2791 REMARK 3 S31: 0.0802 S32: 0.1277 S33: 0.0354 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3D30 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047527. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979782 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38981 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16000 REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 14.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.01630 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2BH0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M NA FORMATE, 0.1M NAAC, PH 4.4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 71.89000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 71.89000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 71.89000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 71.89000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 71.89000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 71.89000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 71.89000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 71.89000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 71.89000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 71.89000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 71.89000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 71.89000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 71.89000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 71.89000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 71.89000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 71.89000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 71.89000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 71.89000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 71.89000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 71.89000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 71.89000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 71.89000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 71.89000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 71.89000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 71.89000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 71.89000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 71.89000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 71.89000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 71.89000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 71.89000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 71.89000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 71.89000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 71.89000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 71.89000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 71.89000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 71.89000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 254 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 441 O HOH A 442 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 43 43.90 -92.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 212 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BH0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A SEMET DERIVATIVE OF EXPA FROM BACILLUS REMARK 900 SUBTILIS DBREF 3D30 A 2 208 UNP O34918 O34918_BACSU 26 232 SEQADV 3D30 MET A 1 UNP O34918 INITIATING METHIONINE SEQRES 1 A 208 MET ALA TYR ASP ASP LEU HIS GLU GLY TYR ALA THR TYR SEQRES 2 A 208 THR GLY SER GLY TYR SER GLY GLY ALA PHE LEU LEU ASP SEQRES 3 A 208 PRO ILE PRO SER ASP MET GLU ILE THR ALA ILE ASN PRO SEQRES 4 A 208 ALA ASP LEU ASN TYR GLY GLY VAL LYS ALA ALA LEU ALA SEQRES 5 A 208 GLY SER TYR LEU GLU VAL GLU GLY PRO LYS GLY LYS THR SEQRES 6 A 208 THR VAL TYR VAL THR ASP LEU TYR PRO GLU GLY ALA ARG SEQRES 7 A 208 GLY ALA LEU ASP LEU SER PRO ASN ALA PHE ARG LYS ILE SEQRES 8 A 208 GLY ASN MET LYS ASP GLY LYS ILE ASN ILE LYS TRP ARG SEQRES 9 A 208 VAL VAL LYS ALA PRO ILE THR GLY ASN PHE THR TYR ARG SEQRES 10 A 208 ILE LYS GLU GLY SER SER ARG TRP TRP ALA ALA ILE GLN SEQRES 11 A 208 VAL ARG ASN HIS LYS TYR PRO VAL MET LYS MET GLU TYR SEQRES 12 A 208 GLU LYS ASP GLY LYS TRP ILE ASN MET GLU LYS MET ASP SEQRES 13 A 208 TYR ASN HIS PHE VAL SER THR ASN LEU GLY THR GLY SER SEQRES 14 A 208 LEU LYS VAL ARG MET THR ASP ILE ARG GLY LYS VAL VAL SEQRES 15 A 208 LYS ASP THR ILE PRO LYS LEU PRO GLU SER GLY THR SER SEQRES 16 A 208 LYS ALA TYR THR VAL PRO GLY HIS VAL GLN PHE PRO GLU HET GOL A 209 6 HET FMT A 210 3 HET FMT A 211 3 HET FMT A 212 3 HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 FMT 3(C H2 O2) FORMUL 6 HOH *230(H2 O) HELIX 1 1 ASN A 38 ASN A 43 1 6 HELIX 2 2 TYR A 44 VAL A 47 5 4 HELIX 3 3 SER A 84 GLY A 92 1 9 HELIX 4 4 ASN A 93 GLY A 97 5 5 SHEET 1 A 7 HIS A 7 TYR A 13 0 SHEET 2 A 7 LEU A 81 LEU A 83 1 O LEU A 83 N THR A 12 SHEET 3 A 7 ILE A 34 ILE A 37 -1 N ALA A 36 O ASP A 82 SHEET 4 A 7 GLY A 63 LEU A 72 1 O THR A 70 N THR A 35 SHEET 5 A 7 TYR A 55 GLY A 60 -1 N VAL A 58 O THR A 65 SHEET 6 A 7 ILE A 99 VAL A 106 -1 O LYS A 102 N GLU A 59 SHEET 7 A 7 HIS A 7 TYR A 13 -1 N HIS A 7 O TRP A 103 SHEET 1 B 8 VAL A 181 ILE A 186 0 SHEET 2 B 8 LEU A 170 ASP A 176 -1 N LEU A 170 O ILE A 186 SHEET 3 B 8 VAL A 138 LYS A 145 -1 N MET A 139 O THR A 175 SHEET 4 B 8 LYS A 148 LYS A 154 -1 O ILE A 150 N TYR A 143 SHEET 5 B 8 PHE A 160 THR A 163 -1 O VAL A 161 N GLU A 153 SHEET 6 B 8 TRP A 126 ARG A 132 -1 N ILE A 129 O PHE A 160 SHEET 7 B 8 THR A 115 ILE A 118 -1 N ARG A 117 O GLN A 130 SHEET 8 B 8 TYR A 198 PRO A 201 -1 O TYR A 198 N ILE A 118 CISPEP 1 ASP A 26 PRO A 27 0 -0.77 SITE 1 AC1 4 GLY A 60 PRO A 61 ASN A 100 LYS A 102 SITE 1 AC2 5 LYS A 95 SER A 192 GLY A 193 HOH A 290 SITE 2 AC2 5 HOH A 382 SITE 1 AC3 4 LYS A 48 MET A 155 ASP A 156 HOH A 428 SITE 1 AC4 3 ARG A 117 THR A 199 HOH A 236 CRYST1 143.780 143.780 143.780 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006955 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006955 0.00000