HEADER TRANSFERASE/TRANSFERASE INHIBITOR 09-MAY-08 3D36 TITLE HOW TO SWITCH OFF A HISTIDINE KINASE: CRYSTAL STRUCTURE OF GEOBACILLUS TITLE 2 STEAROTHERMOPHILUS KINB WITH THE INHIBITOR SDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPORULATION KINASE B; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.13.3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SPORULATION KINASE INHIBITOR SDA; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 272567; SOURCE 4 STRAIN: 10; SOURCE 5 GENE: GK1832, GKA09; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 12 ORGANISM_TAXID: 272567; SOURCE 13 STRAIN: 10; SOURCE 14 GENE: GK2527; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 (DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GHKL ATPASE, FOUR HELIX BUNDLE, CLASS I TWO-COMPONENT HISTIDINE KEYWDS 2 KINASE, KINASE, PHOSPHOPROTEIN, TRANSFERASE, TWO-COMPONENT KEYWDS 3 REGULATORY SYSTEM, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.BICK,V.LAMOUR,K.R.RAJASHANKAR,Y.GORDIYENKO,C.V.ROBINSON,S.A.DARST REVDAT 3 21-FEB-24 3D36 1 REMARK DBREF LINK REVDAT 2 10-MAR-09 3D36 1 JRNL REVDAT 1 13-JAN-09 3D36 0 JRNL AUTH M.J.BICK,V.LAMOUR,K.R.RAJASHANKAR,Y.GORDIYENKO,C.V.ROBINSON, JRNL AUTH 2 S.A.DARST JRNL TITL HOW TO SWITCH OFF A HISTIDINE KINASE: CRYSTAL STRUCTURE OF JRNL TITL 2 GEOBACILLUS STEAROTHERMOPHILUS KINB WITH THE INHIBITOR SDA JRNL REF J.MOL.BIOL. V. 386 163 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19101565 JRNL DOI 10.1016/J.JMB.2008.12.006 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 52332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2620 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : 3617 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3763 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 373 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.179 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3902 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5278 ; 1.096 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 4.806 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;37.672 ;23.665 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 728 ;12.766 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;15.493 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 619 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2802 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1832 ; 0.185 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2661 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 374 ; 0.114 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.013 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 62 ; 0.171 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.173 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2500 ; 0.393 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3876 ; 0.638 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1589 ; 1.119 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1402 ; 1.828 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D36 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047533. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .97949 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52393 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% 2-METHYL-2,4-PENTANEDIOL, 0.2M REMARK 280 LITHIUM CHLORIDE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 210.38133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.19067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 105.19067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 210.38133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 198 REMARK 465 GLU A 199 REMARK 465 LYS A 200 REMARK 465 MET A 201 REMARK 465 GLU A 202 REMARK 465 ALA A 203 REMARK 465 VAL A 204 REMARK 465 THR A 205 REMARK 465 HIS A 206 REMARK 465 SER A 417 REMARK 465 PRO A 418 REMARK 465 SER A 419 REMARK 465 SER A 420 REMARK 465 SER A 421 REMARK 465 THR A 422 REMARK 465 ILE A 423 REMARK 465 SER A 424 REMARK 465 ASP A 425 REMARK 465 LYS A 426 REMARK 465 GLU A 427 REMARK 465 LYS A 428 REMARK 465 GLN A 429 REMARK 465 LEU A 430 REMARK 465 PHE A 431 REMARK 465 ALA A 432 REMARK 465 ALA A 433 REMARK 465 LEU A 434 REMARK 465 MET B 201 REMARK 465 GLU B 202 REMARK 465 ALA B 203 REMARK 465 VAL B 204 REMARK 465 THR B 205 REMARK 465 SER B 417 REMARK 465 PRO B 418 REMARK 465 SER B 419 REMARK 465 SER B 420 REMARK 465 SER B 421 REMARK 465 THR B 422 REMARK 465 ILE B 423 REMARK 465 SER B 424 REMARK 465 ASP B 425 REMARK 465 LYS B 426 REMARK 465 GLU B 427 REMARK 465 LYS B 428 REMARK 465 GLN B 429 REMARK 465 LEU B 430 REMARK 465 PHE B 431 REMARK 465 ALA B 432 REMARK 465 ALA B 433 REMARK 465 LEU B 434 REMARK 465 LYS C 43 REMARK 465 LEU C 44 REMARK 465 SER C 45 REMARK 465 SER C 46 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 359 CE LYS A 359 NZ 0.217 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 293 -34.94 82.10 REMARK 500 HIS A 403 -16.38 75.73 REMARK 500 LEU B 207 98.53 99.47 REMARK 500 TYR B 369 -0.08 76.06 REMARK 500 HIS B 403 -2.65 70.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 478 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 324 OD1 REMARK 620 2 ADP A 500 O2B 91.5 REMARK 620 3 ADP A 500 O1A 88.0 82.8 REMARK 620 4 HOH A 519 O 88.3 95.6 175.9 REMARK 620 5 HOH A 545 O 171.3 96.6 90.1 93.8 REMARK 620 6 HOH A 567 O 83.2 170.1 88.6 92.7 88.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 477 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 324 OD1 REMARK 620 2 ADP B 500 O2B 87.5 REMARK 620 3 ADP B 500 O1A 90.6 86.0 REMARK 620 4 HOH B 761 O 174.2 92.1 95.1 REMARK 620 5 HOH B 792 O 88.1 174.9 96.7 92.0 REMARK 620 6 HOH B 822 O 83.9 88.5 172.4 90.3 88.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 477 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 478 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 703 REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE SEQUENCE WAS OBTAINED FROM THE UNIVERSITY OF REMARK 999 OKLAHOMA UNFINISHED GEOBACILLUS STEAROTHERMOPHILUS GENOME REMARK 999 SEQUENCING (STRAIN 10) PROJECT DBREF 3D36 A 191 434 PDB 3D36 3D36 191 434 DBREF 3D36 B 191 434 PDB 3D36 3D36 191 434 DBREF 3D36 C 1 46 PDB 3D36 3D36 1 46 SEQRES 1 A 244 GLY PRO HIS MET VAL ILE ARG ALA GLU LYS MET GLU ALA SEQRES 2 A 244 VAL THR HIS LEU ALA ALA SER ILE SER HIS GLU ILE ARG SEQRES 3 A 244 ASN PRO LEU THR ALA ALA ARG GLY PHE ILE GLN LEU ILE SEQRES 4 A 244 GLU GLU GLN PRO LEU ALA ALA ASP LYS ARG ARG GLN TYR SEQRES 5 A 244 ALA ARG ILE ALA ILE GLU GLU LEU ASP ARG ALA GLU ALA SEQRES 6 A 244 ILE ILE THR ASP TYR LEU THR PHE ALA LYS PRO ALA PRO SEQRES 7 A 244 GLU THR PRO GLU LYS LEU ASN VAL LYS LEU GLU ILE GLU SEQRES 8 A 244 ARG VAL ILE ASP ILE LEU ARG PRO LEU ALA ASN MET SER SEQRES 9 A 244 CYS VAL ASP ILE GLN ALA THR LEU ALA PRO PHE SER VAL SEQRES 10 A 244 ILE GLY GLU ARG GLU LYS PHE ARG GLN CYS LEU LEU ASN SEQRES 11 A 244 VAL MET LYS ASN ALA ILE GLU ALA MET PRO ASN GLY GLY SEQRES 12 A 244 THR LEU GLN VAL TYR VAL SER ILE ASP ASN GLY ARG VAL SEQRES 13 A 244 LEU ILE ARG ILE ALA ASP THR GLY VAL GLY MET THR LYS SEQRES 14 A 244 GLU GLN LEU GLU ARG LEU GLY GLU PRO TYR PHE THR THR SEQRES 15 A 244 LYS GLY VAL LYS GLY THR GLY LEU GLY MET MET VAL VAL SEQRES 16 A 244 TYR ARG ILE ILE GLU SER MET ASN GLY THR ILE ARG ILE SEQRES 17 A 244 GLU SER GLU ILE HIS LYS GLY THR THR VAL SER ILE TYR SEQRES 18 A 244 LEU PRO LEU ALA SER SER PRO SER SER SER THR ILE SER SEQRES 19 A 244 ASP LYS GLU LYS GLN LEU PHE ALA ALA LEU SEQRES 1 B 244 GLY PRO HIS MET VAL ILE ARG ALA GLU LYS MET GLU ALA SEQRES 2 B 244 VAL THR HIS LEU ALA ALA SER ILE SER HIS GLU ILE ARG SEQRES 3 B 244 ASN PRO LEU THR ALA ALA ARG GLY PHE ILE GLN LEU ILE SEQRES 4 B 244 GLU GLU GLN PRO LEU ALA ALA ASP LYS ARG ARG GLN TYR SEQRES 5 B 244 ALA ARG ILE ALA ILE GLU GLU LEU ASP ARG ALA GLU ALA SEQRES 6 B 244 ILE ILE THR ASP TYR LEU THR PHE ALA LYS PRO ALA PRO SEQRES 7 B 244 GLU THR PRO GLU LYS LEU ASN VAL LYS LEU GLU ILE GLU SEQRES 8 B 244 ARG VAL ILE ASP ILE LEU ARG PRO LEU ALA ASN MET SER SEQRES 9 B 244 CYS VAL ASP ILE GLN ALA THR LEU ALA PRO PHE SER VAL SEQRES 10 B 244 ILE GLY GLU ARG GLU LYS PHE ARG GLN CYS LEU LEU ASN SEQRES 11 B 244 VAL MET LYS ASN ALA ILE GLU ALA MET PRO ASN GLY GLY SEQRES 12 B 244 THR LEU GLN VAL TYR VAL SER ILE ASP ASN GLY ARG VAL SEQRES 13 B 244 LEU ILE ARG ILE ALA ASP THR GLY VAL GLY MET THR LYS SEQRES 14 B 244 GLU GLN LEU GLU ARG LEU GLY GLU PRO TYR PHE THR THR SEQRES 15 B 244 LYS GLY VAL LYS GLY THR GLY LEU GLY MET MET VAL VAL SEQRES 16 B 244 TYR ARG ILE ILE GLU SER MET ASN GLY THR ILE ARG ILE SEQRES 17 B 244 GLU SER GLU ILE HIS LYS GLY THR THR VAL SER ILE TYR SEQRES 18 B 244 LEU PRO LEU ALA SER SER PRO SER SER SER THR ILE SER SEQRES 19 B 244 ASP LYS GLU LYS GLN LEU PHE ALA ALA LEU SEQRES 1 C 46 MET LYS HIS LEU SER ASP GLU LEU LEU ILE GLU SER TYR SEQRES 2 C 46 PHE LYS ALA LYS GLU LEU ASN LEU SER PRO GLU PHE ILE SEQRES 3 C 46 GLU LEU ILE GLU LYS GLU ILE GLN ARG ARG SER LEU THR SEQRES 4 C 46 HIS LYS ILE LYS LEU SER SER HET MG A 478 1 HET ADP A 500 27 HET MG B 477 1 HET ADP B 500 27 HET MPD B 700 8 HET MPD B 702 8 HET MPD B 703 8 HET MPD C 701 8 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 4 MG 2(MG 2+) FORMUL 5 ADP 2(C10 H15 N5 O10 P2) FORMUL 8 MPD 4(C6 H14 O2) FORMUL 12 HOH *373(H2 O) HELIX 1 1 SER A 210 ILE A 229 1 20 HELIX 2 2 GLU A 230 GLN A 232 5 3 HELIX 3 3 ALA A 235 THR A 262 1 28 HELIX 4 4 VAL A 276 ASN A 292 1 17 HELIX 5 5 GLU A 310 ALA A 328 1 19 HELIX 6 6 THR A 358 LEU A 365 1 8 HELIX 7 7 LYS A 373 GLY A 377 5 5 HELIX 8 8 LEU A 380 MET A 392 1 13 HELIX 9 9 SER B 210 GLN B 232 1 23 HELIX 10 10 ALA B 235 THR B 262 1 28 HELIX 11 11 VAL B 276 SER B 294 1 19 HELIX 12 12 GLU B 310 ALA B 328 1 19 HELIX 13 13 THR B 358 LEU B 365 1 8 HELIX 14 14 LYS B 373 GLY B 377 5 5 HELIX 15 15 LEU B 380 MET B 392 1 13 HELIX 16 16 SER C 5 LEU C 19 1 15 HELIX 17 17 SER C 22 ARG C 36 1 15 HELIX 18 18 LEU C 38 ILE C 42 5 5 SHEET 1 A 6 HIS A 193 ILE A 196 0 SHEET 2 A 6 THR A 395 GLU A 401 -1 O ILE A 398 N VAL A 195 SHEET 3 A 6 GLY A 405 PRO A 413 -1 O SER A 409 N ARG A 397 SHEET 4 A 6 ARG A 345 ASP A 352 -1 N ILE A 348 O ILE A 410 SHEET 5 A 6 GLY A 333 ASP A 342 -1 N SER A 340 O LEU A 347 SHEET 6 A 6 VAL A 296 THR A 301 1 N GLN A 299 O LEU A 335 SHEET 1 B 2 GLU A 272 ASN A 275 0 SHEET 2 B 2 SER A 306 GLY A 309 -1 O VAL A 307 N LEU A 274 SHEET 1 C 6 VAL B 195 ARG B 197 0 SHEET 2 C 6 THR B 395 GLU B 401 -1 O SER B 400 N VAL B 195 SHEET 3 C 6 GLY B 405 PRO B 413 -1 O SER B 409 N ARG B 397 SHEET 4 C 6 ARG B 345 ASP B 352 -1 N VAL B 346 O LEU B 412 SHEET 5 C 6 GLY B 333 ASP B 342 -1 N ASP B 342 O ARG B 345 SHEET 6 C 6 VAL B 296 THR B 301 1 N GLN B 299 O LEU B 335 SHEET 1 D 2 GLU B 272 ASN B 275 0 SHEET 2 D 2 SER B 306 GLY B 309 -1 O VAL B 307 N LEU B 274 LINK OD1 ASN A 324 MG MG A 478 1555 1555 2.17 LINK MG MG A 478 O2B ADP A 500 1555 1555 2.03 LINK MG MG A 478 O1A ADP A 500 1555 1555 2.12 LINK MG MG A 478 O HOH A 519 1555 1555 2.18 LINK MG MG A 478 O HOH A 545 1555 1555 2.12 LINK MG MG A 478 O HOH A 567 1555 1555 2.31 LINK OD1 ASN B 324 MG MG B 477 1555 1555 2.07 LINK MG MG B 477 O2B ADP B 500 1555 1555 2.10 LINK MG MG B 477 O1A ADP B 500 1555 1555 1.98 LINK MG MG B 477 O HOH B 761 1555 1555 2.13 LINK MG MG B 477 O HOH B 792 1555 1555 2.12 LINK MG MG B 477 O HOH B 822 1555 1555 2.18 SITE 1 AC1 1 ASN B 324 SITE 1 AC2 1 ASN A 324 SITE 1 AC3 17 ASN A 324 ALA A 328 ASP A 352 GLY A 356 SITE 2 AC3 17 MET A 357 LEU A 365 PHE A 370 THR A 371 SITE 3 AC3 17 THR A 372 LYS A 373 GLY A 377 THR A 378 SITE 4 AC3 17 GLY A 379 LEU A 380 GLY A 381 MET A 382 SITE 5 AC3 17 THR A 406 SITE 1 AC4 16 ASN B 324 ALA B 328 ASP B 352 GLY B 356 SITE 2 AC4 16 MET B 357 LEU B 365 PHE B 370 THR B 371 SITE 3 AC4 16 THR B 372 LYS B 373 THR B 378 GLY B 379 SITE 4 AC4 16 LEU B 380 GLY B 381 MET B 382 THR B 406 SITE 1 AC5 2 GLY B 224 PHE B 225 SITE 1 AC6 8 ASP A 237 LYS A 238 GLN A 241 GLU B 199 SITE 2 AC6 8 ARG B 397 TYR B 411 SER C 5 LEU C 8 SITE 1 AC7 2 ILE B 211 TYR B 260 SITE 1 AC8 3 ILE A 211 TYR A 260 PRO B 266 CRYST1 66.111 66.111 315.572 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015126 0.008733 0.000000 0.00000 SCALE2 0.000000 0.017466 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003169 0.00000