HEADER OXIDOREDUCTASE 10-MAY-08 3D3F TITLE CRYSTAL STRUCTURE OF YVGN AND COFACTOR NADPH FROM BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: YVGN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PUTATIVE REDUCTASE PROTEIN, YVGN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YVGN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ALDO-KETO REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.F.ZHOU,J.LEI,X.D.SU REVDAT 5 01-NOV-23 3D3F 1 REMARK REVDAT 4 25-OCT-17 3D3F 1 REMARK REVDAT 3 29-JAN-14 3D3F 1 JRNL REVDAT 2 13-JUL-11 3D3F 1 VERSN REVDAT 1 28-APR-09 3D3F 0 JRNL AUTH J.LEI,Y.F.ZHOU,L.F.LI,X.-D.SU JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSES OF YVGN AND YTBE FROM JRNL TITL 2 BACILLUS SUBTILIS JRNL REF PROTEIN SCI. V. 18 1792 2009 JRNL REFN ISSN 0961-8368 JRNL PMID 19585557 JRNL DOI 10.1002/PRO.178 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 20421 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1065 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1008 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4452 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 81 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.20000 REMARK 3 B22 (A**2) : -3.37000 REMARK 3 B33 (A**2) : 1.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.916 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.363 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.277 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.879 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.913 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.856 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4643 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6291 ; 1.992 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 548 ; 8.207 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 227 ;38.338 ;25.507 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 846 ;20.110 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;23.101 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 685 ; 0.157 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3456 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2400 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3055 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 226 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.244 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.270 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2840 ; 0.716 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4407 ; 1.166 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2095 ; 1.983 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1884 ; 2.963 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 270 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9054 12.1735 -21.8502 REMARK 3 T TENSOR REMARK 3 T11: -0.1354 T22: -0.0998 REMARK 3 T33: -0.0834 T12: 0.0084 REMARK 3 T13: -0.0016 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.8156 L22: 1.4120 REMARK 3 L33: 2.5456 L12: 0.1184 REMARK 3 L13: 0.0286 L23: 0.3896 REMARK 3 S TENSOR REMARK 3 S11: -0.0270 S12: -0.0199 S13: 0.0027 REMARK 3 S21: -0.0270 S22: -0.0061 S23: -0.0310 REMARK 3 S31: -0.0635 S32: -0.0502 S33: 0.0332 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 270 REMARK 3 ORIGIN FOR THE GROUP (A): -19.1103 43.2027 -6.6203 REMARK 3 T TENSOR REMARK 3 T11: -0.1190 T22: -0.0979 REMARK 3 T33: -0.1099 T12: 0.0064 REMARK 3 T13: 0.0046 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 1.1006 L22: 2.2383 REMARK 3 L33: 2.8123 L12: -0.2620 REMARK 3 L13: 0.2349 L23: 0.3488 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: 0.0260 S13: 0.0296 REMARK 3 S21: 0.0569 S22: -0.0035 S23: -0.0152 REMARK 3 S31: 0.1913 S32: 0.0093 S33: -0.0020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D3F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047542. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SMART6000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : PROTEUM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23334 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 67.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : 0.11000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.80 REMARK 200 R MERGE FOR SHELL (I) : 0.10000 REMARK 200 R SYM FOR SHELL (I) : 0.11000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3B3E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4M SODIUM NITRATE, 40% PEG3350, PH REMARK 280 7.5, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 40.25850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.64250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.25850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.64250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 117 O HOH A 277 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 24 CB VAL A 24 CG1 -0.179 REMARK 500 GLU A 57 CD GLU A 57 OE1 -0.071 REMARK 500 GLU A 57 CD GLU A 57 OE2 -0.077 REMARK 500 ASP A 117 CB ASP A 117 CG -0.169 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 116 N - CA - C ANGL. DEV. = 19.1 DEGREES REMARK 500 LYS B 116 CB - CA - C ANGL. DEV. = -14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 55 9.88 85.88 REMARK 500 ASP A 117 -30.70 -144.27 REMARK 500 ASP B 117 -32.04 -138.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP B 1 DBREF 3D3F A 2 276 UNP O32210 O32210_BACSU 2 276 DBREF 3D3F B 2 276 UNP O32210 O32210_BACSU 2 276 SEQRES 1 A 275 PRO THR SER LEU LYS ASP THR VAL LYS LEU HIS ASN GLY SEQRES 2 A 275 VAL GLU MET PRO TRP PHE GLY LEU GLY VAL PHE LYS VAL SEQRES 3 A 275 GLU ASN GLY ASN GLU ALA THR GLU SER VAL LYS ALA ALA SEQRES 4 A 275 ILE LYS ASN GLY TYR ARG SER ILE ASP THR ALA ALA ILE SEQRES 5 A 275 TYR LYS ASN GLU GLU GLY VAL GLY ILE GLY ILE LYS GLU SEQRES 6 A 275 SER GLY VAL ALA ARG GLU GLU LEU PHE ILE THR SER LYS SEQRES 7 A 275 VAL TRP ASN GLU ASP GLN GLY TYR GLU THR THR LEU ALA SEQRES 8 A 275 ALA PHE GLU LYS SER LEU GLU ARG LEU GLN LEU ASP TYR SEQRES 9 A 275 LEU ASP LEU TYR LEU ILE HIS TRP PRO GLY LYS ASP LYS SEQRES 10 A 275 TYR LYS ASP THR TRP ARG ALA LEU GLU LYS LEU TYR LYS SEQRES 11 A 275 ASP GLY LYS ILE ARG ALA ILE GLY VAL SER ASN PHE GLN SEQRES 12 A 275 VAL HIS HIS LEU GLU GLU LEU LEU LYS ASP ALA GLU ILE SEQRES 13 A 275 LYS PRO MET VAL ASN GLN VAL GLU PHE HIS PRO ARG LEU SEQRES 14 A 275 THR GLN LYS GLU LEU ARG ASP TYR CYS LYS GLY GLN GLY SEQRES 15 A 275 ILE GLN LEU GLU ALA TRP SER PRO LEU MET GLN GLY GLN SEQRES 16 A 275 LEU LEU ASP ASN GLU VAL LEU THR GLN ILE ALA GLU LYS SEQRES 17 A 275 HIS ASN LYS SER VAL ALA GLN VAL ILE LEU ARG TRP ASP SEQRES 18 A 275 LEU GLN HIS GLY VAL VAL THR ILE PRO LYS SER ILE LYS SEQRES 19 A 275 GLU HIS ARG ILE ILE GLU ASN ALA ASP ILE PHE ASP PHE SEQRES 20 A 275 GLU LEU SER GLN GLU ASP MET ASP LYS ILE ASP ALA LEU SEQRES 21 A 275 ASN LYS ASP GLU ARG VAL GLY PRO ASN PRO ASP GLU LEU SEQRES 22 A 275 LEU PHE SEQRES 1 B 275 PRO THR SER LEU LYS ASP THR VAL LYS LEU HIS ASN GLY SEQRES 2 B 275 VAL GLU MET PRO TRP PHE GLY LEU GLY VAL PHE LYS VAL SEQRES 3 B 275 GLU ASN GLY ASN GLU ALA THR GLU SER VAL LYS ALA ALA SEQRES 4 B 275 ILE LYS ASN GLY TYR ARG SER ILE ASP THR ALA ALA ILE SEQRES 5 B 275 TYR LYS ASN GLU GLU GLY VAL GLY ILE GLY ILE LYS GLU SEQRES 6 B 275 SER GLY VAL ALA ARG GLU GLU LEU PHE ILE THR SER LYS SEQRES 7 B 275 VAL TRP ASN GLU ASP GLN GLY TYR GLU THR THR LEU ALA SEQRES 8 B 275 ALA PHE GLU LYS SER LEU GLU ARG LEU GLN LEU ASP TYR SEQRES 9 B 275 LEU ASP LEU TYR LEU ILE HIS TRP PRO GLY LYS ASP LYS SEQRES 10 B 275 TYR LYS ASP THR TRP ARG ALA LEU GLU LYS LEU TYR LYS SEQRES 11 B 275 ASP GLY LYS ILE ARG ALA ILE GLY VAL SER ASN PHE GLN SEQRES 12 B 275 VAL HIS HIS LEU GLU GLU LEU LEU LYS ASP ALA GLU ILE SEQRES 13 B 275 LYS PRO MET VAL ASN GLN VAL GLU PHE HIS PRO ARG LEU SEQRES 14 B 275 THR GLN LYS GLU LEU ARG ASP TYR CYS LYS GLY GLN GLY SEQRES 15 B 275 ILE GLN LEU GLU ALA TRP SER PRO LEU MET GLN GLY GLN SEQRES 16 B 275 LEU LEU ASP ASN GLU VAL LEU THR GLN ILE ALA GLU LYS SEQRES 17 B 275 HIS ASN LYS SER VAL ALA GLN VAL ILE LEU ARG TRP ASP SEQRES 18 B 275 LEU GLN HIS GLY VAL VAL THR ILE PRO LYS SER ILE LYS SEQRES 19 B 275 GLU HIS ARG ILE ILE GLU ASN ALA ASP ILE PHE ASP PHE SEQRES 20 B 275 GLU LEU SER GLN GLU ASP MET ASP LYS ILE ASP ALA LEU SEQRES 21 B 275 ASN LYS ASP GLU ARG VAL GLY PRO ASN PRO ASP GLU LEU SEQRES 22 B 275 LEU PHE HET NDP A 1 48 HET NDP B 1 48 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 5 HOH *81(H2 O) HELIX 1 1 GLY A 30 ASN A 43 1 14 HELIX 2 2 ALA A 51 LYS A 55 5 5 HELIX 3 3 ASN A 56 SER A 67 1 12 HELIX 4 4 ALA A 70 LEU A 74 5 5 HELIX 5 5 TRP A 81 GLN A 85 5 5 HELIX 6 6 GLY A 86 GLN A 102 1 17 HELIX 7 7 LYS A 118 ASP A 132 1 15 HELIX 8 8 GLN A 144 ALA A 155 1 12 HELIX 9 9 GLN A 172 GLN A 182 1 11 HELIX 10 10 LEU A 192 GLN A 196 5 5 HELIX 11 11 ASN A 200 ASN A 211 1 12 HELIX 12 12 SER A 213 GLY A 226 1 14 HELIX 13 13 LYS A 235 ASP A 244 1 10 HELIX 14 14 SER A 251 ALA A 260 1 10 HELIX 15 15 GLY B 30 ASN B 43 1 14 HELIX 16 16 ASN B 56 SER B 67 1 12 HELIX 17 17 ALA B 70 LEU B 74 5 5 HELIX 18 18 TRP B 81 GLN B 85 5 5 HELIX 19 19 GLY B 86 GLN B 102 1 17 HELIX 20 20 LYS B 118 ASP B 132 1 15 HELIX 21 21 GLN B 144 LYS B 153 1 10 HELIX 22 22 GLN B 172 GLY B 183 1 12 HELIX 23 23 LEU B 192 GLN B 196 5 5 HELIX 24 24 ASN B 200 ASN B 211 1 12 HELIX 25 25 SER B 213 HIS B 225 1 13 HELIX 26 26 LYS B 235 ASP B 244 1 10 HELIX 27 27 SER B 251 LEU B 261 1 11 SHEET 1 A 2 THR A 8 LYS A 10 0 SHEET 2 A 2 GLU A 16 PRO A 18 -1 O MET A 17 N VAL A 9 SHEET 1 B 8 LEU A 22 GLY A 23 0 SHEET 2 B 8 SER A 47 ASP A 49 1 O ASP A 49 N LEU A 22 SHEET 3 B 8 PHE A 75 VAL A 80 1 O PHE A 75 N ILE A 48 SHEET 4 B 8 LEU A 106 ILE A 111 1 O LEU A 110 N VAL A 80 SHEET 5 B 8 ILE A 135 SER A 141 1 O ARG A 136 N LEU A 106 SHEET 6 B 8 VAL A 161 GLU A 165 1 O VAL A 161 N VAL A 140 SHEET 7 B 8 GLN A 185 TRP A 189 1 O GLN A 185 N ASN A 162 SHEET 8 B 8 VAL A 228 THR A 229 1 O VAL A 228 N ALA A 188 SHEET 1 C 2 THR B 8 LYS B 10 0 SHEET 2 C 2 GLU B 16 PRO B 18 -1 O MET B 17 N VAL B 9 SHEET 1 D 8 LEU B 22 GLY B 23 0 SHEET 2 D 8 SER B 47 ASP B 49 1 O ASP B 49 N LEU B 22 SHEET 3 D 8 PHE B 75 VAL B 80 1 O PHE B 75 N ILE B 48 SHEET 4 D 8 LEU B 106 ILE B 111 1 O LEU B 110 N VAL B 80 SHEET 5 D 8 ILE B 135 SER B 141 1 O ARG B 136 N LEU B 106 SHEET 6 D 8 VAL B 161 GLU B 165 1 O VAL B 161 N VAL B 140 SHEET 7 D 8 GLN B 185 TRP B 189 1 O TRP B 189 N VAL B 164 SHEET 8 D 8 VAL B 228 THR B 229 1 O VAL B 228 N ALA B 188 SITE 1 AC1 29 GLY A 23 VAL A 24 PHE A 25 ASP A 49 SITE 2 AC1 29 TYR A 54 LYS A 79 HIS A 112 SER A 141 SITE 3 AC1 29 ASN A 142 GLN A 163 TRP A 189 SER A 190 SITE 4 AC1 29 PRO A 191 LEU A 192 MET A 193 GLN A 194 SITE 5 AC1 29 LEU A 198 ALA A 215 ILE A 230 PRO A 231 SITE 6 AC1 29 LYS A 232 SER A 233 ILE A 234 LYS A 235 SITE 7 AC1 29 ARG A 238 GLU A 241 ASN A 242 HOH A 284 SITE 8 AC1 29 HOH A 296 SITE 1 AC2 26 GLY B 23 VAL B 24 PHE B 25 ASP B 49 SITE 2 AC2 26 TYR B 54 LYS B 79 HIS B 112 SER B 141 SITE 3 AC2 26 ASN B 142 GLN B 163 TRP B 189 SER B 190 SITE 4 AC2 26 PRO B 191 LEU B 192 MET B 193 GLN B 194 SITE 5 AC2 26 LEU B 198 ILE B 230 PRO B 231 LYS B 232 SITE 6 AC2 26 SER B 233 ILE B 234 LYS B 235 ARG B 238 SITE 7 AC2 26 ASN B 242 HOH B 321 CRYST1 80.517 123.285 57.226 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012420 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008111 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017475 0.00000