HEADER CHAPERONE 12-MAY-08 3D3R TITLE CRYSTAL STRUCTURE OF THE HYDROGENASE ASSEMBLY CHAPERONE HYPC/HUPF TITLE 2 FAMILY PROTEIN FROM SHEWANELLA ONEIDENSIS MR-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROGENASE ASSEMBLY CHAPERONE HYPC/HUPF; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: HYPC, SO_2092; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P11 KEYWDS SMALL BETA-BARREL, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,T.SKARINA,O.ONOPRIYENKO,A.M.EDWARDS,A.SAVCHENKO,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 13-JUL-11 3D3R 1 VERSN REVDAT 2 24-FEB-09 3D3R 1 VERSN REVDAT 1 27-MAY-08 3D3R 0 JRNL AUTH Y.KIM,T.SKARINA,O.ONOPRIYENKO,A.M.EDWARDS,A.SAVCHENKO, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF THE HYDROGENASE ASSEMBLY CHAPERONE JRNL TITL 2 HYPC/HUPF FAMILY PROTEIN FROM SHEWANELLA ONEIDENSIS MR-1. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 14966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 789 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1121 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1285 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.19000 REMARK 3 B22 (A**2) : -1.05000 REMARK 3 B33 (A**2) : 0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.45000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.622 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1357 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1846 ; 1.851 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 173 ; 5.783 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ;41.523 ;24.769 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 248 ;15.484 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;24.768 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 219 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1022 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 536 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 943 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 77 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 76 ; 0.299 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.257 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 869 ; 1.611 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1385 ; 2.248 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 536 ; 3.683 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 461 ; 5.962 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -4 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5855 9.9908 12.7794 REMARK 3 T TENSOR REMARK 3 T11: -0.0189 T22: -0.0083 REMARK 3 T33: -0.0498 T12: 0.0108 REMARK 3 T13: -0.0101 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.4576 L22: 0.3333 REMARK 3 L33: 0.1514 L12: -0.1648 REMARK 3 L13: -0.2281 L23: 0.0837 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: 0.0062 S13: -0.0266 REMARK 3 S21: 0.0079 S22: 0.0353 S23: 0.0133 REMARK 3 S31: 0.0065 S32: 0.0200 S33: -0.0214 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -3 B 76 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0561 17.9654 11.5437 REMARK 3 T TENSOR REMARK 3 T11: -0.0133 T22: -0.0141 REMARK 3 T33: -0.0485 T12: 0.0176 REMARK 3 T13: -0.0026 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.9736 L22: 0.2548 REMARK 3 L33: 0.0880 L12: -0.3179 REMARK 3 L13: 0.1733 L23: -0.0995 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: -0.0063 S13: -0.0093 REMARK 3 S21: 0.0076 S22: 0.0420 S23: -0.0039 REMARK 3 S31: -0.0211 S32: -0.0051 S33: -0.0307 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D3R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-08. REMARK 100 THE RCSB ID CODE IS RCSB047554. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15804 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 38.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.32800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, DM, SHELXD, RESOLVE, COOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M AMMONIUM CITRATE, REMARK 280 0.3M NDSB211, 0.5MM TCEP, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.43200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.15800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.43200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.15800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -144.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 46.97501 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 40.97797 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 96 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 ASN A 77 REMARK 465 GLU A 78 REMARK 465 THR A 79 REMARK 465 THR A 80 REMARK 465 GLY A 81 REMARK 465 SER A 82 REMARK 465 MSE B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 ARG B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 ASN B 77 REMARK 465 GLU B 78 REMARK 465 THR B 79 REMARK 465 THR B 80 REMARK 465 GLY B 81 REMARK 465 SER B 82 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 28 CG - CD - NE ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG A 28 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 PHE B -2 24.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC7647 RELATED DB: TARGETDB DBREF 3D3R A 1 80 UNP Q8EF93 Q8EF93_SHEON 1 80 DBREF 3D3R B 1 80 UNP Q8EF93 Q8EF93_SHEON 1 80 SEQADV 3D3R MSE A -20 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R GLY A -19 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R SER A -18 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R SER A -17 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R HIS A -16 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R HIS A -15 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R HIS A -14 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R HIS A -13 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R HIS A -12 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R HIS A -11 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R SER A -10 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R SER A -9 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R GLY A -8 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R ARG A -7 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R GLU A -6 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R ASN A -5 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R LEU A -4 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R TYR A -3 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R PHE A -2 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R GLN A -1 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R GLY A 0 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R GLY A 81 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R SER A 82 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R MSE B -20 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R GLY B -19 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R SER B -18 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R SER B -17 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R HIS B -16 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R HIS B -15 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R HIS B -14 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R HIS B -13 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R HIS B -12 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R HIS B -11 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R SER B -10 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R SER B -9 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R GLY B -8 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R ARG B -7 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R GLU B -6 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R ASN B -5 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R LEU B -4 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R TYR B -3 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R PHE B -2 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R GLN B -1 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R GLY B 0 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R GLY B 81 UNP Q8EF93 EXPRESSION TAG SEQADV 3D3R SER B 82 UNP Q8EF93 EXPRESSION TAG SEQRES 1 A 103 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 103 ARG GLU ASN LEU TYR PHE GLN GLY MSE CYS LEU SER ILE SEQRES 3 A 103 PRO SER GLN VAL VAL ALA VAL ASP ASN GLU ARG GLN SER SEQRES 4 A 103 VAL THR VAL ASP THR LEU GLY VAL ARG ARG ASP VAL SER SEQRES 5 A 103 SER HIS LEU MSE THR GLU PRO LEU ALA ILE GLY ASP TYR SEQRES 6 A 103 VAL LEU ILE HIS ILE GLY PHE VAL MSE ASN LYS ILE ASP SEQRES 7 A 103 ARG ASN ASP ALA LEU GLN SER LEU GLU LEU TYR GLN GLU SEQRES 8 A 103 ILE VAL SER LYS LEU GLU ASN GLU THR THR GLY SER SEQRES 1 B 103 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 103 ARG GLU ASN LEU TYR PHE GLN GLY MSE CYS LEU SER ILE SEQRES 3 B 103 PRO SER GLN VAL VAL ALA VAL ASP ASN GLU ARG GLN SER SEQRES 4 B 103 VAL THR VAL ASP THR LEU GLY VAL ARG ARG ASP VAL SER SEQRES 5 B 103 SER HIS LEU MSE THR GLU PRO LEU ALA ILE GLY ASP TYR SEQRES 6 B 103 VAL LEU ILE HIS ILE GLY PHE VAL MSE ASN LYS ILE ASP SEQRES 7 B 103 ARG ASN ASP ALA LEU GLN SER LEU GLU LEU TYR GLN GLU SEQRES 8 B 103 ILE VAL SER LYS LEU GLU ASN GLU THR THR GLY SER MODRES 3D3R MSE A 1 MET SELENOMETHIONINE MODRES 3D3R MSE A 35 MET SELENOMETHIONINE MODRES 3D3R MSE A 53 MET SELENOMETHIONINE MODRES 3D3R MSE B 1 MET SELENOMETHIONINE MODRES 3D3R MSE B 35 MET SELENOMETHIONINE MODRES 3D3R MSE B 53 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 35 8 HET MSE A 53 8 HET MSE B 1 8 HET MSE B 35 8 HET MSE B 53 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 HOH *86(H2 O) HELIX 1 1 ASP A 57 GLU A 76 1 20 HELIX 2 2 TYR B -3 CYS B 2 5 6 HELIX 3 3 HIS B 33 MSE B 35 5 3 HELIX 4 4 ASP B 57 GLU B 76 1 20 SHEET 1 A 2 TYR A -3 GLN A -1 0 SHEET 2 A 2 CYS A 2 LEU A 3 -1 O CYS A 2 N GLN A -1 SHEET 1 B 8 VAL A 26 SER A 31 0 SHEET 2 B 8 SER A 18 THR A 23 -1 N VAL A 19 O VAL A 30 SHEET 3 B 8 SER A 7 ASP A 13 -1 N VAL A 10 O THR A 20 SHEET 4 B 8 TYR A 44 ILE A 56 -1 O VAL A 45 N SER A 7 SHEET 5 B 8 TYR B 44 ILE B 56 -1 O VAL B 52 N HIS A 48 SHEET 6 B 8 SER B 7 ASP B 13 -1 N SER B 7 O VAL B 45 SHEET 7 B 8 SER B 18 THR B 23 -1 O SER B 18 N ASP B 13 SHEET 8 B 8 VAL B 26 SER B 31 -1 O VAL B 30 N VAL B 19 SSBOND 1 CYS A 2 CYS B 2 1555 2656 2.17 LINK C GLY A 0 N MSE A 1 1555 1555 1.31 LINK C MSE A 1 N ACYS A 2 1555 1555 1.35 LINK C MSE A 1 N BCYS A 2 1555 1555 1.33 LINK C LEU A 34 N MSE A 35 1555 1555 1.33 LINK C MSE A 35 N THR A 36 1555 1555 1.33 LINK C VAL A 52 N MSE A 53 1555 1555 1.33 LINK C MSE A 53 N ASN A 54 1555 1555 1.33 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N CYS B 2 1555 1555 1.34 LINK C LEU B 34 N MSE B 35 1555 1555 1.35 LINK C MSE B 35 N THR B 36 1555 1555 1.34 LINK C VAL B 52 N MSE B 53 1555 1555 1.34 LINK C MSE B 53 N ASN B 54 1555 1555 1.33 CRYST1 78.864 58.316 51.924 90.00 127.89 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012680 0.000000 0.009866 0.00000 SCALE2 0.000000 0.017148 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024402 0.00000