HEADER TRANSFERASE 12-MAY-08 3D3U TITLE CRYSTAL STRUCTURE OF 4-HYDROXYBUTYRATE COA-TRANSFERASE (ABFT-2) FROM TITLE 2 PORPHYROMONAS GINGIVALIS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET PGR26 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-HYDROXYBUTYRATE COA-TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; SOURCE 3 ORGANISM_TAXID: 242619; SOURCE 4 STRAIN: W83; SOURCE 5 ATCC: BAA-308; SOURCE 6 GENE: ABFT-2, PG_1956; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS ALPHA-BETA PROTEIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.FOROUHAR,H.NEELY,X.-Z.ZHANG,W.N.PRICE II,M.HUSSAIN,J.SEETHARAMAN, AUTHOR 2 R.XIAO,K.CONOVER,K.CUNNINGHAM,L.-C.MA,C.K.HO,J.K.EVERETT,T.B.ACTON, AUTHOR 3 G.T.MONTELIONE,J.F.HUNT,L.TONG,NORTHEAST STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (NESG) REVDAT 5 24-JAN-18 3D3U 1 AUTHOR JRNL REVDAT 4 25-OCT-17 3D3U 1 REMARK REVDAT 3 13-JUL-11 3D3U 1 VERSN REVDAT 2 24-FEB-09 3D3U 1 VERSN REVDAT 1 15-JUL-08 3D3U 0 JRNL AUTH F.FOROUHAR,H.NEELY,X.-Z.ZHANG,W.N.PRICE II,M.HUSSAIN, JRNL AUTH 2 J.SEETHARAMAN,R.XIAO,K.CONOVER,K.CUNNINGHAM,L.-C.MA,C.K.HO, JRNL AUTH 3 J.K.EVERETT,T.B.ACTON,G.T.MONTELIONE,J.F.HUNT,L.TONG JRNL TITL CRYSTAL STRUCTURE OF 4-HYDROXYBUTYRATE COA-TRANSFERASE JRNL TITL 2 (ABFT-2) FROM PORPHYROMONAS GINGIVALIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 505 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 648 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3018 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 28.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.43000 REMARK 3 B22 (A**2) : -1.98000 REMARK 3 B33 (A**2) : 0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.406 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.302 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.071 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3077 ; 0.033 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4157 ; 2.806 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 382 ; 7.975 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;40.745 ;23.688 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 534 ;25.220 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.766 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 465 ; 0.177 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2327 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1633 ; 0.299 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2105 ; 0.350 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 104 ; 0.198 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.340 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.121 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1973 ; 1.219 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3104 ; 2.075 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1229 ; 3.575 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1053 ; 5.599 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 430 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3542 5.1715 15.1827 REMARK 3 T TENSOR REMARK 3 T11: -0.0329 T22: 0.0237 REMARK 3 T33: -0.0019 T12: 0.0121 REMARK 3 T13: 0.0016 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 0.6884 L22: 1.3709 REMARK 3 L33: 1.4346 L12: 0.3462 REMARK 3 L13: -0.1697 L23: -1.1791 REMARK 3 S TENSOR REMARK 3 S11: -0.0297 S12: 0.0584 S13: -0.1483 REMARK 3 S21: -0.0810 S22: 0.0072 S23: -0.0954 REMARK 3 S31: 0.1341 S32: -0.0506 S33: 0.0225 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FRIEDEL PAIRS WERE USED IN PHASING. REMARK 3 PROGRAM CNS 1.2 HAS ALSO BEEN USED IN REFINEMENT REMARK 4 REMARK 4 3D3U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97900 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21251 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 12.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.35400 REMARK 200 R SYM FOR SHELL (I) : 0.32400 REMARK 200 FOR SHELL : 2.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SNB, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 20 MM TRIS-HCL PH REMARK 280 7.5, 100 MM NACL, 5 MM ACETYL-COA. RESERVOIR SOLUTION: 200 MM REMARK 280 AMMONIUM CITRATE PH 5.0, 20% PEG 3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.34200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.75200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.63950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.75200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.34200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.63950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 81 REMARK 465 PHE A 82 REMARK 465 LEU A 83 REMARK 465 GLU A 84 REMARK 465 GLY A 85 REMARK 465 ASN A 86 REMARK 465 SER A 87 REMARK 465 ARG A 88 REMARK 465 PRO A 89 REMARK 465 ALA A 90 REMARK 465 SER A 91 REMARK 465 ARG A 92 REMARK 465 ASP A 93 REMARK 465 ARG A 94 REMARK 465 ARG A 95 REMARK 465 VAL A 96 REMARK 465 ASP A 97 REMARK 465 PHE A 98 REMARK 465 ILE A 99 REMARK 465 PRO A 100 REMARK 465 PRO A 190 REMARK 465 ALA A 191 REMARK 465 ALA A 323 REMARK 465 SER A 324 REMARK 465 GLU A 325 REMARK 465 SER A 326 REMARK 465 ILE A 327 REMARK 465 GLY A 328 REMARK 465 TYR A 329 REMARK 465 GLU A 330 REMARK 465 GLN A 331 REMARK 465 PHE A 332 REMARK 465 SER A 333 REMARK 465 GLY A 334 REMARK 465 SER A 335 REMARK 465 GLY A 336 REMARK 465 GLU A 375 REMARK 465 GLY A 376 REMARK 465 ALA A 377 REMARK 465 CYS A 378 REMARK 465 VAL A 379 REMARK 465 THR A 380 REMARK 465 GLU A 431 REMARK 465 LEU A 432 REMARK 465 GLU A 433 REMARK 465 HIS A 434 REMARK 465 HIS A 435 REMARK 465 HIS A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 465 HIS A 439 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 11 CB VAL A 11 CG1 -0.137 REMARK 500 TYR A 61 CB TYR A 61 CG 0.121 REMARK 500 TYR A 61 CG TYR A 61 CD2 0.093 REMARK 500 TYR A 61 CG TYR A 61 CD1 0.083 REMARK 500 TYR A 61 CD1 TYR A 61 CE1 0.138 REMARK 500 TYR A 61 CE2 TYR A 61 CD2 0.117 REMARK 500 GLY A 63 N GLY A 63 CA 0.124 REMARK 500 ALA A 65 CA ALA A 65 CB 0.181 REMARK 500 PHE A 115 CE1 PHE A 115 CZ 0.128 REMARK 500 TYR A 141 CZ TYR A 141 CE2 -0.079 REMARK 500 GLU A 182 CG GLU A 182 CD 0.096 REMARK 500 GLU A 182 CD GLU A 182 OE1 0.069 REMARK 500 PRO A 189 N PRO A 189 CA 0.102 REMARK 500 LYS A 346 CB LYS A 346 CG 0.177 REMARK 500 MET A 355 CG MET A 355 SD 0.166 REMARK 500 PHE A 357 CZ PHE A 357 CE2 0.135 REMARK 500 GLU A 392 CD GLU A 392 OE1 0.088 REMARK 500 ARG A 399 CG ARG A 399 CD 0.177 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 6 CB - CG - CD1 ANGL. DEV. = -13.4 DEGREES REMARK 500 ASP A 15 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 20 CB - CG - OD2 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG A 46 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 HIS A 67 CB - CA - C ANGL. DEV. = -15.6 DEGREES REMARK 500 GLU A 71 OE1 - CD - OE2 ANGL. DEV. = -8.0 DEGREES REMARK 500 CYS A 101 CA - CB - SG ANGL. DEV. = -13.0 DEGREES REMARK 500 LEU A 109 CB - CG - CD2 ANGL. DEV. = -11.1 DEGREES REMARK 500 ASP A 181 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 LEU A 188 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 ASP A 209 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 LEU A 225 CB - CG - CD2 ANGL. DEV. = -12.2 DEGREES REMARK 500 ARG A 226 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP A 293 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 LEU A 314 CB - CG - CD2 ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 343 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 MET A 355 CG - SD - CE ANGL. DEV. = 10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 22 69.76 -112.00 REMARK 500 PRO A 24 143.42 -39.75 REMARK 500 ALA A 33 -118.71 81.17 REMARK 500 GLU A 52 -102.35 -104.61 REMARK 500 ASN A 53 69.59 -102.79 REMARK 500 HIS A 58 -171.64 -170.96 REMARK 500 MET A 59 -108.80 -138.45 REMARK 500 ASP A 64 67.34 -31.77 REMARK 500 ALA A 65 -80.72 -71.39 REMARK 500 PRO A 66 79.87 -41.27 REMARK 500 HIS A 67 -34.63 -152.47 REMARK 500 SER A 74 -6.54 79.98 REMARK 500 PHE A 103 -45.86 -29.44 REMARK 500 ARG A 111 22.99 -77.45 REMARK 500 GLN A 112 -6.14 -159.53 REMARK 500 PRO A 116 69.69 -67.38 REMARK 500 ASN A 128 -167.57 -111.67 REMARK 500 ASP A 140 -102.08 12.77 REMARK 500 GLU A 182 130.21 178.05 REMARK 500 ALA A 185 140.46 -32.02 REMARK 500 SER A 193 161.67 147.51 REMARK 500 ASP A 194 -91.37 -35.98 REMARK 500 HIS A 237 79.95 -152.60 REMARK 500 THR A 242 -160.08 -122.44 REMARK 500 ASN A 255 -7.77 -144.61 REMARK 500 LYS A 259 127.34 -29.82 REMARK 500 ASP A 293 21.65 -70.68 REMARK 500 TYR A 294 -59.37 -142.89 REMARK 500 LEU A 318 10.87 -60.11 REMARK 500 ASN A 384 41.74 -43.42 REMARK 500 GLU A 385 -70.69 -122.02 REMARK 500 GLU A 392 -19.69 -42.52 REMARK 500 LEU A 403 -52.94 -23.77 REMARK 500 ARG A 429 6.70 176.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PGR26 RELATED DB: TARGETDB DBREF 3D3U A 1 431 UNP Q7MTJ6 Q7MTJ6_PORGI 1 431 SEQADV 3D3U GLY A 192 UNP Q7MTJ6 ILE 192 EXPRESSION TAG SEQADV 3D3U LEU A 432 UNP Q7MTJ6 EXPRESSION TAG SEQADV 3D3U GLU A 433 UNP Q7MTJ6 EXPRESSION TAG SEQADV 3D3U HIS A 434 UNP Q7MTJ6 EXPRESSION TAG SEQADV 3D3U HIS A 435 UNP Q7MTJ6 EXPRESSION TAG SEQADV 3D3U HIS A 436 UNP Q7MTJ6 EXPRESSION TAG SEQADV 3D3U HIS A 437 UNP Q7MTJ6 EXPRESSION TAG SEQADV 3D3U HIS A 438 UNP Q7MTJ6 EXPRESSION TAG SEQADV 3D3U HIS A 439 UNP Q7MTJ6 EXPRESSION TAG SEQRES 1 A 439 MET GLN TRP GLN GLU LEU TYR ARG GLN ARG VAL CYS SER SEQRES 2 A 439 ALA ASP GLU ALA VAL VAL ASP SER LEU LYS PRO GLY THR SEQRES 3 A 439 LYS VAL VAL PHE GLY HIS ALA ALA ALA ALA PRO VAL ARG SEQRES 4 A 439 PHE SER GLN ALA MET TYR ARG GLN ARG GLU LYS LEU GLU SEQRES 5 A 439 ASN ILE THR VAL PHE HIS MET LEU TYR PHE GLY ASP ALA SEQRES 6 A 439 PRO HIS LEU ALA PRO GLU MET ARG SER HIS VAL HIS PRO SEQRES 7 A 439 THR LEU ASN PHE LEU GLU GLY ASN SER ARG PRO ALA SER SEQRES 8 A 439 ARG ASP ARG ARG VAL ASP PHE ILE PRO CYS HIS PHE HIS SEQRES 9 A 439 GLU VAL PRO GLU LEU PHE ARG GLN GLY PHE PHE PRO LEU SEQRES 10 A 439 ASP VAL ALA VAL VAL GLN VAL SER THR PRO ASN GLU GLU SEQRES 11 A 439 GLY TYR CYS SER PHE GLY VAL SER CYS ASP TYR THR LYS SEQRES 12 A 439 ALA ALA ALA GLU CYS ALA PRO VAL VAL VAL ALA GLU VAL SEQRES 13 A 439 ASN LYS GLN MET PRO PHE ILE GLY GLY GLU ASN LEU ILE SEQRES 14 A 439 HIS ILE SER LYS LEU THR HIS ILE ILE GLU VAL ASP GLU SEQRES 15 A 439 PRO ILE ALA GLU VAL LEU PRO PRO ALA GLY SER ASP LEU SEQRES 16 A 439 GLU LEU ARG ILE GLY GLN ASN CYS ALA SER LEU ILE LYS SEQRES 17 A 439 ASP GLY ASP THR LEU GLN LEU GLY ILE GLY GLY ILE PRO SEQRES 18 A 439 ASP ALA VAL LEU ARG ALA LEU GLU GLY HIS LYS ASP LEU SEQRES 19 A 439 GLY ILE HIS THR GLU MET PHE THR ASP GLY VAL MET ARG SEQRES 20 A 439 MET ILE ARG LYS GLY ILE ILE ASN GLY LYS LYS LYS THR SEQRES 21 A 439 LEU HIS PRO GLU LYS VAL VAL THR SER LEU ILE PHE GLY SEQRES 22 A 439 SER LYS GLU LEU TYR ASP PHE VAL ASN ASN ASN PRO VAL SEQRES 23 A 439 ILE GLU CYS TYR PRO VAL ASP TYR ILE ASN ASN PRO ASP SEQRES 24 A 439 VAL ILE GLY LYS ASN ASP ARG MET VAL SER ILE ASN SER SEQRES 25 A 439 CYS LEU GLU MET ASP LEU MET GLY GLN ALA ALA SER GLU SEQRES 26 A 439 SER ILE GLY TYR GLU GLN PHE SER GLY SER GLY GLY GLN SEQRES 27 A 439 VAL ASP PHE LEU ARG GLY ALA LYS ARG SER LYS GLY GLY SEQRES 28 A 439 ILE SER ILE MET ALA PHE PRO SER THR ALA LYS LYS GLY SEQRES 29 A 439 THR GLU SER ARG ILE VAL PRO ILE LEU LYS GLU GLY ALA SEQRES 30 A 439 CYS VAL THR THR GLY ARG ASN GLU VAL ASP TYR VAL VAL SEQRES 31 A 439 THR GLU TYR GLY VAL ALA ARG LEU ARG GLY ALA THR LEU SEQRES 32 A 439 ARG GLN ARG ALA GLU ALA LEU THR ALA ILE ALA HIS PRO SEQRES 33 A 439 ASP PHE ARG PRO ALA LEU GLU GLU GLU ILE ARG ARG ARG SEQRES 34 A 439 PHE GLU LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *20(H2 O) HELIX 1 1 TRP A 3 VAL A 11 1 9 HELIX 2 2 SER A 13 LEU A 22 1 10 HELIX 3 3 HIS A 32 ALA A 36 5 5 HELIX 4 4 PRO A 37 GLN A 47 1 11 HELIX 5 5 ALA A 69 ARG A 73 5 5 HELIX 6 6 HIS A 102 HIS A 104 5 3 HELIX 7 7 GLU A 105 ARG A 111 1 7 HELIX 8 8 TYR A 141 ALA A 149 1 9 HELIX 9 9 SER A 172 LEU A 174 5 3 HELIX 10 10 SER A 193 SER A 205 1 13 HELIX 11 11 GLY A 218 ALA A 227 1 10 HELIX 12 12 THR A 242 LYS A 251 1 10 HELIX 13 13 SER A 274 ASN A 282 1 9 HELIX 14 14 PRO A 291 ASN A 296 1 6 HELIX 15 15 ASN A 297 ASN A 304 1 8 HELIX 16 16 GLY A 337 LYS A 346 1 10 HELIX 17 17 THR A 402 ALA A 414 1 13 HELIX 18 18 ASP A 417 ARG A 428 1 12 SHEET 1 A 6 VAL A 76 THR A 79 0 SHEET 2 A 6 ILE A 54 PHE A 57 1 N VAL A 56 O HIS A 77 SHEET 3 A 6 LYS A 27 PHE A 30 1 N VAL A 28 O THR A 55 SHEET 4 A 6 VAL A 119 SER A 125 1 O VAL A 121 N VAL A 29 SHEET 5 A 6 VAL A 151 ASN A 157 1 O ASN A 157 N VAL A 124 SHEET 6 A 6 HIS A 176 VAL A 180 1 O VAL A 180 N VAL A 156 SHEET 1 B 2 TYR A 132 SER A 134 0 SHEET 2 B 2 LEU A 168 HIS A 170 -1 O ILE A 169 N CYS A 133 SHEET 1 C 9 GLY A 164 GLY A 165 0 SHEET 2 C 9 ILE A 287 CYS A 289 1 O CYS A 289 N GLY A 164 SHEET 3 C 9 VAL A 266 THR A 268 1 N VAL A 266 O GLU A 288 SHEET 4 C 9 GLY A 235 HIS A 237 1 N ILE A 236 O VAL A 267 SHEET 5 C 9 THR A 212 LEU A 215 1 N LEU A 213 O HIS A 237 SHEET 6 C 9 MET A 307 ASN A 311 1 O ILE A 310 N GLN A 214 SHEET 7 C 9 ILE A 352 ALA A 356 1 O ILE A 354 N SER A 309 SHEET 8 C 9 TYR A 388 THR A 391 1 O VAL A 390 N MET A 355 SHEET 9 C 9 GLY A 394 ARG A 397 -1 O GLY A 394 N THR A 391 SHEET 1 D 2 MET A 316 ASP A 317 0 SHEET 2 D 2 ILE A 369 VAL A 370 1 O VAL A 370 N MET A 316 SHEET 1 E 2 THR A 360 ALA A 361 0 SHEET 2 E 2 GLU A 366 SER A 367 -1 O GLU A 366 N ALA A 361 LINK C ALA A 43 N MET A 44 1555 1555 1.32 LINK C MET A 44 N TYR A 45 1555 1555 1.33 LINK C HIS A 58 N MET A 59 1555 1555 1.34 LINK C MET A 59 N LEU A 60 1555 1555 1.33 LINK C GLU A 71 N MET A 72 1555 1555 1.33 LINK C MET A 72 N ARG A 73 1555 1555 1.34 LINK C GLN A 159 N MET A 160 1555 1555 1.34 LINK C MET A 160 N PRO A 161 1555 1555 1.33 LINK C GLU A 239 N MET A 240 1555 1555 1.33 LINK C MET A 240 N PHE A 241 1555 1555 1.29 LINK C VAL A 245 N MET A 246 1555 1555 1.35 LINK C MET A 246 N ARG A 247 1555 1555 1.30 LINK C ARG A 247 N MET A 248 1555 1555 1.32 LINK C MET A 248 N ILE A 249 1555 1555 1.33 LINK C ARG A 306 N MET A 307 1555 1555 1.31 LINK C MET A 307 N VAL A 308 1555 1555 1.34 LINK C GLU A 315 N MET A 316 1555 1555 1.32 LINK C MET A 316 N ASP A 317 1555 1555 1.33 LINK C LEU A 318 N MET A 319 1555 1555 1.34 LINK C MET A 319 N GLY A 320 1555 1555 1.32 LINK C ILE A 354 N MET A 355 1555 1555 1.35 LINK C MET A 355 N ALA A 356 1555 1555 1.31 CRYST1 54.684 87.279 93.504 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018287 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011458 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010695 0.00000