HEADER HYDROLASE 13-MAY-08 3D42 TITLE CRYSTAL STRUCTURE OF HEPTP IN COMPLEX WITH A MONOPHOSPHORYLATED ERK2 TITLE 2 PEPTIDE CAVEAT 3D42 CHIRALITY ERROR AT CA CENTERS OF LEU 176 AND GLU 209 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 65-360); COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE LC-PTP, HEMATOPOIETIC PROTEIN- COMPND 6 TYROSINE PHOSPHATASE, HEPTP; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1 PEPTIDE; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: ACTIVATION LOOP (UNP RESIDUES 184-191); COMPND 14 SYNONYM: EXTRACELLULAR SIGNAL-REGULATED KINASE 2, ERK-2, MITOGEN- COMPND 15 ACTIVATED PROTEIN KINASE 2, MAP KINASE 2, MAPK 2, P42-MAPK, ERT1; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBAD; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS KEYWDS HEPTP, HUMAN HEMATOPOIETIC TYROSINE PHOSPHATASE CATALYTIC DOMAIN KEYWDS 2 MUTANT, LC-PTP, PTPN7, ERK2, PTP-PEPTIDE COMPLEX, MAPK-DERIVED KEYWDS 3 PEPTIDE, HYDROLASE, PHOSPHOPROTEIN, PROTEIN PHOSPHATASE, ATP- KEYWDS 4 BINDING, CELL CYCLE, HOST-VIRUS INTERACTION, KINASE, NUCLEOTIDE- KEYWDS 5 BINDING, SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.A.CRITTON,A.TORTAJADA,R.PAGE REVDAT 5 15-NOV-23 3D42 1 REMARK REVDAT 4 30-AUG-23 3D42 1 REMARK REVDAT 3 20-OCT-21 3D42 1 REMARK SEQADV LINK REVDAT 2 13-JUL-11 3D42 1 VERSN REVDAT 1 17-MAR-09 3D42 0 JRNL AUTH D.A.CRITTON,A.TORTAJADA,G.STETSON,W.PETI,R.PAGE JRNL TITL STRUCTURAL BASIS OF SUBSTRATE RECOGNITION BY HEMATOPOIETIC JRNL TITL 2 TYROSINE PHOSPHATASE. JRNL REF BIOCHEMISTRY V. 47 13336 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 19053285 JRNL DOI 10.1021/BI801724N REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 10585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 524 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 711 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2311 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.53000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -1.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.32000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.813 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.295 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.184 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.943 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2384 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3246 ; 1.754 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 290 ; 6.688 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;37.223 ;23.727 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 379 ;16.802 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;19.699 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 355 ; 0.382 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1835 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1107 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1588 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 154 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.169 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.110 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1514 ; 2.283 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2370 ; 3.268 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1002 ; 4.986 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 876 ; 6.637 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3D42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047565. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(III) CHANNEL CUT REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : SI(III) CHANNEL CUT REMARK 200 MONOCHROMATOR, OXFORD DANFYSIK REMARK 200 TOROIDAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10896 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.22100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2QDM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM TARTRATE DIBASIC, PH REMARK 280 6.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.23000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.51750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.23000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.51750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 32 REMARK 465 GLY A 33 REMARK 465 SER A 34 REMARK 465 ASP A 35 REMARK 465 LYS A 36 REMARK 465 ILE A 37 REMARK 465 HIS A 38 REMARK 465 HIS A 39 REMARK 465 HIS A 40 REMARK 465 HIS A 41 REMARK 465 HIS A 42 REMARK 465 HIS A 43 REMARK 465 GLU A 178 REMARK 465 GLY A 179 REMARK 465 LYS A 180 REMARK 465 GLU A 336 REMARK 465 PRO A 337 REMARK 465 SER A 338 REMARK 465 PRO A 339 REMARK 465 LEU B 182 REMARK 465 ALA B 187 REMARK 465 THR B 188 REMARK 465 ARG B 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 112 CG CD OE1 NE2 REMARK 470 SER A 122 OG REMARK 470 GLN A 123 CG CD OE1 NE2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 ARG A 177 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 ARG A 200 NE CZ NH1 NH2 REMARK 470 GLN A 202 CD OE1 NE2 REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 314 O HOH A 340 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 44 N - CA - C ANGL. DEV. = 17.7 DEGREES REMARK 500 LEU A 176 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 69 56.24 -146.17 REMARK 500 ASP A 94 72.42 -112.32 REMARK 500 ARG A 119 50.01 -108.27 REMARK 500 GLU A 190 -44.18 -135.19 REMARK 500 GLN A 220 -122.35 49.08 REMARK 500 ILE A 274 -45.02 -131.08 REMARK 500 ILE A 313 107.23 62.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PTR B 185 VAL B 186 148.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAR A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZC0 RELATED DB: PDB REMARK 900 RELATED ID: 2GP0 RELATED DB: PDB REMARK 900 RELATED ID: 2HVL RELATED DB: PDB REMARK 900 RELATED ID: 2QDC RELATED DB: PDB REMARK 900 RELATED ID: 2QDM RELATED DB: PDB REMARK 900 RELATED ID: 2QDP RELATED DB: PDB REMARK 900 RELATED ID: 3D44 RELATED DB: PDB DBREF 3D42 A 44 339 UNP P35236 PTN7_HUMAN 65 360 DBREF 3D42 B 182 189 UNP P28482 MK01_HUMAN 184 191 SEQADV 3D42 MET A 32 UNP P35236 EXPRESSION TAG SEQADV 3D42 GLY A 33 UNP P35236 EXPRESSION TAG SEQADV 3D42 SER A 34 UNP P35236 EXPRESSION TAG SEQADV 3D42 ASP A 35 UNP P35236 EXPRESSION TAG SEQADV 3D42 LYS A 36 UNP P35236 EXPRESSION TAG SEQADV 3D42 ILE A 37 UNP P35236 EXPRESSION TAG SEQADV 3D42 HIS A 38 UNP P35236 EXPRESSION TAG SEQADV 3D42 HIS A 39 UNP P35236 EXPRESSION TAG SEQADV 3D42 HIS A 40 UNP P35236 EXPRESSION TAG SEQADV 3D42 HIS A 41 UNP P35236 EXPRESSION TAG SEQADV 3D42 HIS A 42 UNP P35236 EXPRESSION TAG SEQADV 3D42 HIS A 43 UNP P35236 EXPRESSION TAG SEQADV 3D42 ASP A 106 UNP P35236 THR 127 ENGINEERED MUTATION SEQADV 3D42 SER A 270 UNP P35236 CYS 291 ENGINEERED MUTATION SEQRES 1 A 308 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS ASN SEQRES 2 A 308 THR PRO ARG GLU VAL THR LEU HIS PHE LEU ARG THR ALA SEQRES 3 A 308 GLY HIS PRO LEU THR ARG TRP ALA LEU GLN ARG GLN PRO SEQRES 4 A 308 PRO SER PRO LYS GLN LEU GLU GLU GLU PHE LEU LYS ILE SEQRES 5 A 308 PRO SER ASN PHE VAL SER PRO GLU ASP LEU ASP ILE PRO SEQRES 6 A 308 GLY HIS ALA SER LYS ASP ARG TYR LYS ASP ILE LEU PRO SEQRES 7 A 308 ASN PRO GLN SER ARG VAL CYS LEU GLY ARG ALA GLN SER SEQRES 8 A 308 GLN GLU ASP GLY ASP TYR ILE ASN ALA ASN TYR ILE ARG SEQRES 9 A 308 GLY TYR ASP GLY LYS GLU LYS VAL TYR ILE ALA THR GLN SEQRES 10 A 308 GLY PRO MET PRO ASN THR VAL SER ASP PHE TRP GLU MET SEQRES 11 A 308 VAL TRP GLN GLU GLU VAL SER LEU ILE VAL MET LEU THR SEQRES 12 A 308 GLN LEU ARG GLU GLY LYS GLU LYS CYS VAL HIS TYR TRP SEQRES 13 A 308 PRO THR GLU GLU GLU THR TYR GLY PRO PHE GLN ILE ARG SEQRES 14 A 308 ILE GLN ASP MET LYS GLU CYS PRO GLU TYR THR VAL ARG SEQRES 15 A 308 GLN LEU THR ILE GLN TYR GLN GLU GLU ARG ARG SER VAL SEQRES 16 A 308 LYS HIS ILE LEU PHE SER ALA TRP PRO ASP HIS GLN THR SEQRES 17 A 308 PRO GLU SER ALA GLY PRO LEU LEU ARG LEU VAL ALA GLU SEQRES 18 A 308 VAL GLU GLU SER PRO GLU THR ALA ALA HIS PRO GLY PRO SEQRES 19 A 308 ILE VAL VAL HIS SER SER ALA GLY ILE GLY ARG THR GLY SEQRES 20 A 308 CYS PHE ILE ALA THR ARG ILE GLY CYS GLN GLN LEU LYS SEQRES 21 A 308 ALA ARG GLY GLU VAL ASP ILE LEU GLY ILE VAL CYS GLN SEQRES 22 A 308 LEU ARG LEU ASP ARG GLY GLY MET ILE GLN THR ALA GLU SEQRES 23 A 308 GLN TYR GLN PHE LEU HIS HIS THR LEU ALA LEU TYR ALA SEQRES 24 A 308 GLY GLN LEU PRO GLU GLU PRO SER PRO SEQRES 1 B 8 LEU THR GLU PTR VAL ALA THR ARG MODRES 3D42 PTR B 185 TYR O-PHOSPHOTYROSINE HET PTR B 185 16 HET TAR A 1 10 HET GOL A 2 6 HETNAM PTR O-PHOSPHOTYROSINE HETNAM TAR D(-)-TARTARIC ACID HETNAM GOL GLYCEROL HETSYN PTR PHOSPHONOTYROSINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PTR C9 H12 N O6 P FORMUL 3 TAR C4 H6 O6 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *122(H2 O) HELIX 1 1 THR A 45 ALA A 57 1 13 HELIX 2 2 ARG A 63 GLN A 69 1 7 HELIX 3 3 SER A 72 LYS A 82 1 11 HELIX 4 4 SER A 89 LEU A 93 5 5 HELIX 5 5 GLY A 97 ASP A 102 5 6 HELIX 6 6 ASN A 110 GLN A 112 5 3 HELIX 7 7 GLY A 136 LYS A 140 5 5 HELIX 8 8 MET A 151 ASN A 153 5 3 HELIX 9 9 THR A 154 GLU A 165 1 12 HELIX 10 10 ALA A 243 GLU A 255 1 13 HELIX 11 11 ILE A 274 GLY A 294 1 21 HELIX 12 12 ILE A 298 ARG A 309 1 12 HELIX 13 13 THR A 315 LEU A 333 1 19 SHEET 1 A 2 PRO A 60 THR A 62 0 SHEET 2 A 2 GLU A 295 ASP A 297 -1 O VAL A 296 N LEU A 61 SHEET 1 B 9 ARG A 114 CYS A 116 0 SHEET 2 B 9 TYR A 128 ILE A 134 -1 O ALA A 131 N VAL A 115 SHEET 3 B 9 TYR A 144 GLN A 148 -1 O TYR A 144 N ILE A 134 SHEET 4 B 9 ILE A 266 SER A 270 1 O VAL A 268 N ILE A 145 SHEET 5 B 9 LEU A 169 LEU A 173 1 N VAL A 171 O VAL A 267 SHEET 6 B 9 GLU A 222 PHE A 231 1 O PHE A 231 N MET A 172 SHEET 7 B 9 TYR A 210 TYR A 219 -1 N LEU A 215 O VAL A 226 SHEET 8 B 9 PHE A 197 GLU A 206 -1 N GLN A 202 O GLN A 214 SHEET 9 B 9 GLU A 191 TYR A 194 -1 N TYR A 194 O PHE A 197 LINK C GLU B 184 N PTR B 185 1555 1555 1.34 LINK C PTR B 185 N VAL B 186 1555 1555 1.36 SITE 1 AC1 10 HIS A 59 PRO A 60 LEU A 61 THR A 62 SITE 2 AC1 10 ALA A 65 SER A 242 ALA A 243 GLY A 244 SITE 3 AC1 10 HIS A 324 LEU A 328 SITE 1 AC2 7 THR A 174 GLN A 175 ARG A 177 GLU A 181 SITE 2 AC2 7 LYS A 182 CYS A 183 ARG A 276 CRYST1 118.460 39.035 83.650 90.00 124.59 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008442 0.000000 0.005820 0.00000 SCALE2 0.000000 0.025618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014521 0.00000