HEADER HORMONE/HORMONE RECEPTOR 14-MAY-08 3D48 TITLE CRYSTAL STRUCTURE OF A PROLACTIN RECEPTOR ANTAGONIST BOUND TO THE TITLE 2 EXTRACELLULAR DOMAIN OF THE PROLACTIN RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLACTIN; COMPND 3 CHAIN: P; COMPND 4 FRAGMENT: RESIDUES 12-199; COMPND 5 SYNONYM: PRL; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PROLACTIN RECEPTOR; COMPND 10 CHAIN: R; COMPND 11 FRAGMENT: EXTRACELLULAR DOMAIN; COMPND 12 SYNONYM: PRL-R; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32-A(+); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: PRLR; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PET39-B(+) KEYWDS CYTOKINE-CYTOKINE RECEPTOR COMPLEX, FOUR-HELIX BUNDLE, GLYCOPROTEIN, KEYWDS 2 HORMONE, LACTATION, SECRETED, ALTERNATIVE SPLICING, MEMBRANE, KEYWDS 3 RECEPTOR, TRANSMEMBRANE, HORMONE-HORMONE RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.A.SVENSSON,J.BREINHOLT REVDAT 6 01-NOV-23 3D48 1 REMARK REVDAT 5 10-NOV-21 3D48 1 REMARK SEQADV REVDAT 4 23-MAY-18 3D48 1 REMARK REVDAT 3 24-FEB-09 3D48 1 VERSN REVDAT 2 28-OCT-08 3D48 1 JRNL REVDAT 1 03-JUN-08 3D48 0 JRNL AUTH L.A.SVENSSON,K.BONDENSGAARD,L.NORSKOV-LAURITSEN, JRNL AUTH 2 L.CHRISTENSEN,P.BECKER,M.D.ANDERSEN,M.J.MALTESEN,K.D.RAND, JRNL AUTH 3 J.BREINHOLT JRNL TITL CRYSTAL STRUCTURE OF A PROLACTIN RECEPTOR ANTAGONIST BOUND JRNL TITL 2 TO THE EXTRACELLULAR DOMAIN OF THE PROLACTIN RECEPTOR JRNL REF J.BIOL.CHEM. V. 283 19085 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18467331 JRNL DOI 10.1074/JBC.M801202200 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.4.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20629 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1088 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1501 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2945 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.48000 REMARK 3 B22 (A**2) : -2.48000 REMARK 3 B33 (A**2) : 3.73000 REMARK 3 B12 (A**2) : -1.24000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.335 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.289 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.222 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.770 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.863 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3040 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4121 ; 2.013 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 353 ; 8.690 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;35.912 ;23.885 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 522 ;22.244 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.394 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 446 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2281 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1813 ; 0.964 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2929 ; 1.782 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1227 ; 2.465 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1192 ; 4.035 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D48 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047571. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21797 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 22.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50100 REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: FOR THE R CHAIN, PDB ENTRY 1BP3. FOR THE P CHAIN, REMARK 200 A CORE OF A MODELER HOMOLOGY MODEL BASED ON PDB ENTRIES 1BP3, REMARK 200 1F6F, 1RW5 AND 1N9D. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5M SODIUM CHLORIDE, 0.1M HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.54667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.27333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.91000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 11.63667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.18333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER P 12 REMARK 465 ARG P 43 REMARK 465 TYR P 44 REMARK 465 THR P 45 REMARK 465 HIS P 46 REMARK 465 GLY P 47 REMARK 465 ARG P 48 REMARK 465 GLY P 104 REMARK 465 MET P 105 REMARK 465 GLN P 106 REMARK 465 GLU P 107 REMARK 465 ALA P 108 REMARK 465 PRO P 109 REMARK 465 GLU P 110 REMARK 465 HIS P 138 REMARK 465 PRO P 139 REMARK 465 GLU P 140 REMARK 465 THR P 141 REMARK 465 LYS P 142 REMARK 465 GLU P 143 REMARK 465 ASN P 144 REMARK 465 GLU P 145 REMARK 465 CYS P 199 REMARK 465 SER R 0 REMARK 465 GLN R 1 REMARK 465 GLN R 115 REMARK 465 PRO R 116 REMARK 465 GLU R 117 REMARK 465 ASP R 118 REMARK 465 ARG R 119 REMARK 465 LYS R 120 REMARK 465 LEU R 172 REMARK 465 HIS R 173 REMARK 465 ASP R 205 REMARK 465 PHE R 206 REMARK 465 THR R 207 REMARK 465 MET R 208 REMARK 465 ASN R 209 REMARK 465 ASP R 210 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG P 16 N LEU P 18 1.89 REMARK 500 O LEU R 2 ND2 ASN R 83 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS R 184 CB CYS R 184 SG -0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU R 179 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG P 16 -118.27 -64.80 REMARK 500 ASP P 17 -43.33 12.77 REMARK 500 ASP P 41 93.74 -66.85 REMARK 500 SER P 90 -19.46 -48.07 REMARK 500 GLU P 93 -73.77 -57.04 REMARK 500 ASN P 197 60.97 62.55 REMARK 500 ASN R 16 22.09 -158.28 REMARK 500 LYS R 17 14.55 53.05 REMARK 500 THR R 28 125.36 -37.41 REMARK 500 ASP R 29 128.14 -28.45 REMARK 500 GLU R 45 136.58 158.45 REMARK 500 CYS R 51 124.37 -33.19 REMARK 500 ASP R 53 102.41 -166.11 REMARK 500 PRO R 59 132.21 -36.84 REMARK 500 ASP R 104 172.46 -54.41 REMARK 500 LEU R 109 107.24 -56.63 REMARK 500 PRO R 203 -168.93 -60.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO R 4 GLY R 5 45.06 REMARK 500 GLY R 175 GLN R 176 -146.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 P 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 R 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 R 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO3 R 213 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BP3 RELATED DB: PDB REMARK 900 RELATED ID: 1F6F RELATED DB: PDB REMARK 900 RELATED ID: 1RW5 RELATED DB: PDB REMARK 900 RELATED ID: 1N9D RELATED DB: PDB REMARK 900 RELATED ID: 2Q98 RELATED DB: PDB DBREF 3D48 P 12 199 UNP P01236 PRL_HUMAN 40 227 DBREF 3D48 R 1 210 UNP P16471 PRLR_HUMAN 25 234 SEQADV 3D48 SER P 12 UNP P01236 GLN 40 ENGINEERED MUTATION SEQADV 3D48 ARG P 129 UNP P01236 GLY 157 ENGINEERED MUTATION SEQADV 3D48 SER R 0 UNP P16471 EXPRESSION TAG SEQRES 1 P 188 SER VAL THR LEU ARG ASP LEU PHE ASP ARG ALA VAL VAL SEQRES 2 P 188 LEU SER HIS TYR ILE HIS ASN LEU SER SER GLU MET PHE SEQRES 3 P 188 SER GLU PHE ASP LYS ARG TYR THR HIS GLY ARG GLY PHE SEQRES 4 P 188 ILE THR LYS ALA ILE ASN SER CYS HIS THR SER SER LEU SEQRES 5 P 188 ALA THR PRO GLU ASP LYS GLU GLN ALA GLN GLN MET ASN SEQRES 6 P 188 GLN LYS ASP PHE LEU SER LEU ILE VAL SER ILE LEU ARG SEQRES 7 P 188 SER TRP ASN GLU PRO LEU TYR HIS LEU VAL THR GLU VAL SEQRES 8 P 188 ARG GLY MET GLN GLU ALA PRO GLU ALA ILE LEU SER LYS SEQRES 9 P 188 ALA VAL GLU ILE GLU GLU GLN THR LYS ARG LEU LEU GLU SEQRES 10 P 188 ARG MET GLU LEU ILE VAL SER GLN VAL HIS PRO GLU THR SEQRES 11 P 188 LYS GLU ASN GLU ILE TYR PRO VAL TRP SER GLY LEU PRO SEQRES 12 P 188 SER LEU GLN MET ALA ASP GLU GLU SER ARG LEU SER ALA SEQRES 13 P 188 TYR TYR ASN LEU LEU HIS CYS LEU ARG ARG ASP SER HIS SEQRES 14 P 188 LYS ILE ASP ASN TYR LEU LYS LEU LEU LYS CYS ARG ILE SEQRES 15 P 188 ILE HIS ASN ASN ASN CYS SEQRES 1 R 211 SER GLN LEU PRO PRO GLY LYS PRO GLU ILE PHE LYS CYS SEQRES 2 R 211 ARG SER PRO ASN LYS GLU THR PHE THR CYS TRP TRP ARG SEQRES 3 R 211 PRO GLY THR ASP GLY GLY LEU PRO THR ASN TYR SER LEU SEQRES 4 R 211 THR TYR HIS ARG GLU GLY GLU THR LEU MET HIS GLU CYS SEQRES 5 R 211 PRO ASP TYR ILE THR GLY GLY PRO ASN SER CYS HIS PHE SEQRES 6 R 211 GLY LYS GLN TYR THR SER MET TRP ARG THR TYR ILE MET SEQRES 7 R 211 MET VAL ASN ALA THR ASN GLN MET GLY SER SER PHE SER SEQRES 8 R 211 ASP GLU LEU TYR VAL ASP VAL THR TYR ILE VAL GLN PRO SEQRES 9 R 211 ASP PRO PRO LEU GLU LEU ALA VAL GLU VAL LYS GLN PRO SEQRES 10 R 211 GLU ASP ARG LYS PRO TYR LEU TRP ILE LYS TRP SER PRO SEQRES 11 R 211 PRO THR LEU ILE ASP LEU LYS THR GLY TRP PHE THR LEU SEQRES 12 R 211 LEU TYR GLU ILE ARG LEU LYS PRO GLU LYS ALA ALA GLU SEQRES 13 R 211 TRP GLU ILE HIS PHE ALA GLY GLN GLN THR GLU PHE LYS SEQRES 14 R 211 ILE LEU SER LEU HIS PRO GLY GLN LYS TYR LEU VAL GLN SEQRES 15 R 211 VAL ARG CYS LYS PRO ASP HIS GLY TYR TRP SER ALA TRP SEQRES 16 R 211 SER PRO ALA THR PHE ILE GLN ILE PRO SER ASP PHE THR SEQRES 17 R 211 MET ASN ASP HET CO3 P 1 4 HET CO3 R 211 4 HET CO3 R 212 4 HET CO3 R 213 4 HETNAM CO3 CARBONATE ION FORMUL 3 CO3 4(C O3 2-) FORMUL 7 HOH *103(H2 O) HELIX 1 1 THR P 14 ASP P 41 1 28 HELIX 2 2 PHE P 50 ILE P 55 1 6 HELIX 3 3 CYS P 58 LEU P 63 5 6 HELIX 4 4 ASP P 68 GLN P 73 1 6 HELIX 5 5 ASN P 76 ARG P 103 1 28 HELIX 6 6 ALA P 111 VAL P 137 1 27 HELIX 7 7 GLY P 152 GLN P 157 1 6 HELIX 8 8 ASP P 160 ILE P 194 1 35 HELIX 9 9 GLY R 65 THR R 69 5 5 HELIX 10 10 THR R 98 ILE R 100 5 3 SHEET 1 A 3 LYS R 6 ARG R 13 0 SHEET 2 A 3 PHE R 20 THR R 28 -1 O THR R 21 N ARG R 13 SHEET 3 A 3 SER R 61 PHE R 64 -1 O PHE R 64 N PHE R 20 SHEET 1 B 4 HIS R 49 GLU R 50 0 SHEET 2 B 4 ASN R 35 ARG R 42 -1 N TYR R 40 O HIS R 49 SHEET 3 B 4 THR R 74 ASN R 83 -1 O ASN R 80 N SER R 37 SHEET 4 B 4 GLY R 86 PHE R 89 -1 O GLY R 86 N ASN R 83 SHEET 1 C 4 HIS R 49 GLU R 50 0 SHEET 2 C 4 ASN R 35 ARG R 42 -1 N TYR R 40 O HIS R 49 SHEET 3 C 4 THR R 74 ASN R 83 -1 O ASN R 80 N SER R 37 SHEET 4 C 4 LEU R 93 ASP R 96 -1 O VAL R 95 N TYR R 75 SHEET 1 D 3 LEU R 107 GLU R 112 0 SHEET 2 D 3 LEU R 123 SER R 128 -1 O LYS R 126 N ALA R 110 SHEET 3 D 3 GLU R 166 ILE R 169 -1 O ILE R 169 N LEU R 123 SHEET 1 E 4 GLU R 157 GLY R 162 0 SHEET 2 E 4 LEU R 142 PRO R 150 -1 N ILE R 146 O HIS R 159 SHEET 3 E 4 LYS R 177 PRO R 186 -1 O GLN R 181 N ARG R 147 SHEET 4 E 4 THR R 198 GLN R 201 -1 O THR R 198 N VAL R 180 SSBOND 1 CYS P 58 CYS P 174 1555 1555 2.05 SSBOND 2 CYS R 12 CYS R 22 1555 1555 2.08 SSBOND 3 CYS R 51 CYS R 62 1555 1555 2.12 SITE 1 AC1 5 SER P 57 CYS P 58 HIS P 59 LEU P 171 SITE 2 AC1 5 CYS P 174 SITE 1 AC2 2 TYR R 190 TRP R 191 SITE 1 AC3 3 CYS R 12 ARG R 13 GLN R 102 SITE 1 AC4 5 THR R 39 TYR R 40 HIS R 41 ILE R 76 SITE 2 AC4 5 MET R 78 CRYST1 125.350 125.350 69.820 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007980 0.004610 0.000000 0.00000 SCALE2 0.000000 0.009210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014320 0.00000