data_3D4A # _entry.id 3D4A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3D4A pdb_00003d4a 10.2210/pdb3d4a/pdb RCSB RCSB047573 ? ? WWPDB D_1000047573 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 4 'Structure model' 1 3 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' diffrn_source 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' struct_site 7 4 'Structure model' pdbx_entry_details 8 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3D4A _pdbx_database_status.recvd_initial_deposition_date 2008-05-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2SAR ;Structure of ribonuclease Sa with 3'-GMP ; unspecified PDB 1GMP ;Structure of ribonuclease Sa with 2'-GMP ; unspecified PDB 1RSN ;Structure of ribonuclease Sa with exo-2',3'-cyclophosphorotioate ; unspecified PDB 1PY3 'Structure of ribonuclease Sa2 without ligand' unspecified PDB 1PYL 'Structure of ribonuclease Sa2 without ligand' unspecified PDB 3D5G . unspecified PDB 3D5I . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bauerova-Hlinkova, V.' 1 'Sevcik, J.' 2 # _citation.id primary _citation.title 'Structure of RNase Sa2 complexes with mononucleotides - new aspects of catalytic reaction and substrate recognition' _citation.journal_abbrev 'Febs J.' _citation.journal_volume 276 _citation.page_first 4156 _citation.page_last 4168 _citation.year 2009 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1742-464X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19558492 _citation.pdbx_database_id_DOI 10.1111/j.1742-4658.2009.07125.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bauerova-Hlinkova, V.' 1 ? primary 'Dvorsky, R.' 2 ? primary 'Perecko, D.' 3 ? primary 'Povazanec, F.' 4 ? primary 'Sevcik, J.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Ribonuclease 10909.012 3 3.1.4.8 ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer syn "GUANOSINE-3'-MONOPHOSPHATE" 363.221 1 ? ? ? ? 4 water nat water 18.015 133 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ribonuclease Sa2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ADPALADVCRTKLPSQAQDTLALIAKNGPYPYNRDGVVFENRESRLPKKGNGYYHEFTVVTPGSNDRGTRRVVTGGYGEQ YWSPDHYATFQEIDPRC ; _entity_poly.pdbx_seq_one_letter_code_can ;ADPALADVCRTKLPSQAQDTLALIAKNGPYPYNRDGVVFENRESRLPKKGNGYYHEFTVVTPGSNDRGTRRVVTGGYGEQ YWSPDHYATFQEIDPRC ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 "GUANOSINE-3'-MONOPHOSPHATE" 3GP 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ASP n 1 3 PRO n 1 4 ALA n 1 5 LEU n 1 6 ALA n 1 7 ASP n 1 8 VAL n 1 9 CYS n 1 10 ARG n 1 11 THR n 1 12 LYS n 1 13 LEU n 1 14 PRO n 1 15 SER n 1 16 GLN n 1 17 ALA n 1 18 GLN n 1 19 ASP n 1 20 THR n 1 21 LEU n 1 22 ALA n 1 23 LEU n 1 24 ILE n 1 25 ALA n 1 26 LYS n 1 27 ASN n 1 28 GLY n 1 29 PRO n 1 30 TYR n 1 31 PRO n 1 32 TYR n 1 33 ASN n 1 34 ARG n 1 35 ASP n 1 36 GLY n 1 37 VAL n 1 38 VAL n 1 39 PHE n 1 40 GLU n 1 41 ASN n 1 42 ARG n 1 43 GLU n 1 44 SER n 1 45 ARG n 1 46 LEU n 1 47 PRO n 1 48 LYS n 1 49 LYS n 1 50 GLY n 1 51 ASN n 1 52 GLY n 1 53 TYR n 1 54 TYR n 1 55 HIS n 1 56 GLU n 1 57 PHE n 1 58 THR n 1 59 VAL n 1 60 VAL n 1 61 THR n 1 62 PRO n 1 63 GLY n 1 64 SER n 1 65 ASN n 1 66 ASP n 1 67 ARG n 1 68 GLY n 1 69 THR n 1 70 ARG n 1 71 ARG n 1 72 VAL n 1 73 VAL n 1 74 THR n 1 75 GLY n 1 76 GLY n 1 77 TYR n 1 78 GLY n 1 79 GLU n 1 80 GLN n 1 81 TYR n 1 82 TRP n 1 83 SER n 1 84 PRO n 1 85 ASP n 1 86 HIS n 1 87 TYR n 1 88 ALA n 1 89 THR n 1 90 PHE n 1 91 GLN n 1 92 GLU n 1 93 ILE n 1 94 ASP n 1 95 PRO n 1 96 ARG n 1 97 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain R8/12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'pEH200 was derived from pKK223-3' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptomyces aureofaciens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1894 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain NovaBlue _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pEH200 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3GP non-polymer . "GUANOSINE-3'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 ? ? ? A . n A 1 2 ASP 2 2 ? ? ? A . n A 1 3 PRO 3 3 3 PRO PRO A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 TYR 30 30 30 TYR TYR A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 HIS 55 55 55 HIS HIS A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 THR 61 61 61 THR THR A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 TRP 82 82 82 TRP TRP A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 CYS 97 97 97 CYS CYS A . n B 1 1 ALA 1 1 1 ALA ALA B . n B 1 2 ASP 2 2 2 ASP ASP B . n B 1 3 PRO 3 3 3 PRO PRO B . n B 1 4 ALA 4 4 4 ALA ALA B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 ALA 6 6 6 ALA ALA B . n B 1 7 ASP 7 7 7 ASP ASP B . n B 1 8 VAL 8 8 8 VAL VAL B . n B 1 9 CYS 9 9 9 CYS CYS B . n B 1 10 ARG 10 10 10 ARG ARG B . n B 1 11 THR 11 11 11 THR THR B . n B 1 12 LYS 12 12 12 LYS LYS B . n B 1 13 LEU 13 13 13 LEU LEU B . n B 1 14 PRO 14 14 14 PRO PRO B . n B 1 15 SER 15 15 15 SER SER B . n B 1 16 GLN 16 16 16 GLN GLN B . n B 1 17 ALA 17 17 17 ALA ALA B . n B 1 18 GLN 18 18 18 GLN GLN B . n B 1 19 ASP 19 19 19 ASP ASP B . n B 1 20 THR 20 20 20 THR THR B . n B 1 21 LEU 21 21 21 LEU LEU B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 ILE 24 24 24 ILE ILE B . n B 1 25 ALA 25 25 25 ALA ALA B . n B 1 26 LYS 26 26 26 LYS LYS B . n B 1 27 ASN 27 27 27 ASN ASN B . n B 1 28 GLY 28 28 28 GLY GLY B . n B 1 29 PRO 29 29 29 PRO PRO B . n B 1 30 TYR 30 30 30 TYR TYR B . n B 1 31 PRO 31 31 31 PRO PRO B . n B 1 32 TYR 32 32 32 TYR TYR B . n B 1 33 ASN 33 33 33 ASN ASN B . n B 1 34 ARG 34 34 34 ARG ARG B . n B 1 35 ASP 35 35 35 ASP ASP B . n B 1 36 GLY 36 36 36 GLY GLY B . n B 1 37 VAL 37 37 37 VAL VAL B . n B 1 38 VAL 38 38 38 VAL VAL B . n B 1 39 PHE 39 39 39 PHE PHE B . n B 1 40 GLU 40 40 40 GLU GLU B . n B 1 41 ASN 41 41 41 ASN ASN B . n B 1 42 ARG 42 42 42 ARG ARG B . n B 1 43 GLU 43 43 43 GLU GLU B . n B 1 44 SER 44 44 44 SER SER B . n B 1 45 ARG 45 45 45 ARG ARG B . n B 1 46 LEU 46 46 46 LEU LEU B . n B 1 47 PRO 47 47 47 PRO PRO B . n B 1 48 LYS 48 48 48 LYS LYS B . n B 1 49 LYS 49 49 49 LYS LYS B . n B 1 50 GLY 50 50 50 GLY GLY B . n B 1 51 ASN 51 51 51 ASN ASN B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 TYR 53 53 53 TYR TYR B . n B 1 54 TYR 54 54 54 TYR TYR B . n B 1 55 HIS 55 55 55 HIS HIS B . n B 1 56 GLU 56 56 56 GLU GLU B . n B 1 57 PHE 57 57 57 PHE PHE B . n B 1 58 THR 58 58 58 THR THR B . n B 1 59 VAL 59 59 59 VAL VAL B . n B 1 60 VAL 60 60 60 VAL VAL B . n B 1 61 THR 61 61 61 THR THR B . n B 1 62 PRO 62 62 62 PRO PRO B . n B 1 63 GLY 63 63 63 GLY GLY B . n B 1 64 SER 64 64 ? ? ? B . n B 1 65 ASN 65 65 ? ? ? B . n B 1 66 ASP 66 66 66 ASP ASP B . n B 1 67 ARG 67 67 67 ARG ARG B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 THR 69 69 69 THR THR B . n B 1 70 ARG 70 70 70 ARG ARG B . n B 1 71 ARG 71 71 71 ARG ARG B . n B 1 72 VAL 72 72 72 VAL VAL B . n B 1 73 VAL 73 73 73 VAL VAL B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 GLY 75 75 75 GLY GLY B . n B 1 76 GLY 76 76 76 GLY GLY B . n B 1 77 TYR 77 77 77 TYR TYR B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 GLU 79 79 79 GLU GLU B . n B 1 80 GLN 80 80 80 GLN GLN B . n B 1 81 TYR 81 81 81 TYR TYR B . n B 1 82 TRP 82 82 82 TRP TRP B . n B 1 83 SER 83 83 83 SER SER B . n B 1 84 PRO 84 84 84 PRO PRO B . n B 1 85 ASP 85 85 85 ASP ASP B . n B 1 86 HIS 86 86 86 HIS HIS B . n B 1 87 TYR 87 87 87 TYR TYR B . n B 1 88 ALA 88 88 88 ALA ALA B . n B 1 89 THR 89 89 89 THR THR B . n B 1 90 PHE 90 90 90 PHE PHE B . n B 1 91 GLN 91 91 91 GLN GLN B . n B 1 92 GLU 92 92 92 GLU GLU B . n B 1 93 ILE 93 93 93 ILE ILE B . n B 1 94 ASP 94 94 94 ASP ASP B . n B 1 95 PRO 95 95 95 PRO PRO B . n B 1 96 ARG 96 96 96 ARG ARG B . n B 1 97 CYS 97 97 97 CYS CYS B . n C 1 1 ALA 1 1 ? ? ? C . n C 1 2 ASP 2 2 ? ? ? C . n C 1 3 PRO 3 3 ? ? ? C . n C 1 4 ALA 4 4 ? ? ? C . n C 1 5 LEU 5 5 5 LEU LEU C . n C 1 6 ALA 6 6 6 ALA ALA C . n C 1 7 ASP 7 7 7 ASP ASP C . n C 1 8 VAL 8 8 8 VAL VAL C . n C 1 9 CYS 9 9 9 CYS CYS C . n C 1 10 ARG 10 10 10 ARG ARG C . n C 1 11 THR 11 11 11 THR THR C . n C 1 12 LYS 12 12 12 LYS LYS C . n C 1 13 LEU 13 13 13 LEU LEU C . n C 1 14 PRO 14 14 14 PRO PRO C . n C 1 15 SER 15 15 15 SER SER C . n C 1 16 GLN 16 16 16 GLN GLN C . n C 1 17 ALA 17 17 17 ALA ALA C . n C 1 18 GLN 18 18 18 GLN GLN C . n C 1 19 ASP 19 19 19 ASP ASP C . n C 1 20 THR 20 20 20 THR THR C . n C 1 21 LEU 21 21 21 LEU LEU C . n C 1 22 ALA 22 22 22 ALA ALA C . n C 1 23 LEU 23 23 23 LEU LEU C . n C 1 24 ILE 24 24 24 ILE ILE C . n C 1 25 ALA 25 25 25 ALA ALA C . n C 1 26 LYS 26 26 26 LYS LYS C . n C 1 27 ASN 27 27 27 ASN ASN C . n C 1 28 GLY 28 28 28 GLY GLY C . n C 1 29 PRO 29 29 29 PRO PRO C . n C 1 30 TYR 30 30 30 TYR TYR C . n C 1 31 PRO 31 31 31 PRO PRO C . n C 1 32 TYR 32 32 32 TYR TYR C . n C 1 33 ASN 33 33 33 ASN ASN C . n C 1 34 ARG 34 34 34 ARG ARG C . n C 1 35 ASP 35 35 35 ASP ASP C . n C 1 36 GLY 36 36 36 GLY GLY C . n C 1 37 VAL 37 37 37 VAL VAL C . n C 1 38 VAL 38 38 38 VAL VAL C . n C 1 39 PHE 39 39 39 PHE PHE C . n C 1 40 GLU 40 40 40 GLU GLU C . n C 1 41 ASN 41 41 41 ASN ASN C . n C 1 42 ARG 42 42 42 ARG ARG C . n C 1 43 GLU 43 43 43 GLU GLU C . n C 1 44 SER 44 44 44 SER SER C . n C 1 45 ARG 45 45 45 ARG ARG C . n C 1 46 LEU 46 46 46 LEU LEU C . n C 1 47 PRO 47 47 47 PRO PRO C . n C 1 48 LYS 48 48 48 LYS LYS C . n C 1 49 LYS 49 49 49 LYS LYS C . n C 1 50 GLY 50 50 50 GLY GLY C . n C 1 51 ASN 51 51 51 ASN ASN C . n C 1 52 GLY 52 52 52 GLY GLY C . n C 1 53 TYR 53 53 53 TYR TYR C . n C 1 54 TYR 54 54 54 TYR TYR C . n C 1 55 HIS 55 55 55 HIS HIS C . n C 1 56 GLU 56 56 56 GLU GLU C . n C 1 57 PHE 57 57 57 PHE PHE C . n C 1 58 THR 58 58 58 THR THR C . n C 1 59 VAL 59 59 59 VAL VAL C . n C 1 60 VAL 60 60 60 VAL VAL C . n C 1 61 THR 61 61 61 THR THR C . n C 1 62 PRO 62 62 62 PRO PRO C . n C 1 63 GLY 63 63 ? ? ? C . n C 1 64 SER 64 64 ? ? ? C . n C 1 65 ASN 65 65 ? ? ? C . n C 1 66 ASP 66 66 ? ? ? C . n C 1 67 ARG 67 67 67 ARG ARG C . n C 1 68 GLY 68 68 68 GLY GLY C . n C 1 69 THR 69 69 69 THR THR C . n C 1 70 ARG 70 70 70 ARG ARG C . n C 1 71 ARG 71 71 71 ARG ARG C . n C 1 72 VAL 72 72 72 VAL VAL C . n C 1 73 VAL 73 73 73 VAL VAL C . n C 1 74 THR 74 74 74 THR THR C . n C 1 75 GLY 75 75 75 GLY GLY C . n C 1 76 GLY 76 76 76 GLY GLY C . n C 1 77 TYR 77 77 77 TYR TYR C . n C 1 78 GLY 78 78 78 GLY GLY C . n C 1 79 GLU 79 79 79 GLU GLU C . n C 1 80 GLN 80 80 80 GLN GLN C . n C 1 81 TYR 81 81 81 TYR TYR C . n C 1 82 TRP 82 82 82 TRP TRP C . n C 1 83 SER 83 83 83 SER SER C . n C 1 84 PRO 84 84 84 PRO PRO C . n C 1 85 ASP 85 85 85 ASP ASP C . n C 1 86 HIS 86 86 86 HIS HIS C . n C 1 87 TYR 87 87 87 TYR TYR C . n C 1 88 ALA 88 88 88 ALA ALA C . n C 1 89 THR 89 89 89 THR THR C . n C 1 90 PHE 90 90 90 PHE PHE C . n C 1 91 GLN 91 91 91 GLN GLN C . n C 1 92 GLU 92 92 92 GLU GLU C . n C 1 93 ILE 93 93 93 ILE ILE C . n C 1 94 ASP 94 94 94 ASP ASP C . n C 1 95 PRO 95 95 95 PRO PRO C . n C 1 96 ARG 96 96 96 ARG ARG C . n C 1 97 CYS 97 97 97 CYS CYS C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 1 98 98 SO4 SO4 A . E 2 SO4 1 98 98 SO4 SO4 B . F 3 3GP 1 99 99 3GP 3GP B . G 4 HOH 1 99 2 HOH HOH A . G 4 HOH 2 100 7 HOH HOH A . G 4 HOH 3 101 9 HOH HOH A . G 4 HOH 4 102 10 HOH HOH A . G 4 HOH 5 103 12 HOH HOH A . G 4 HOH 6 104 14 HOH HOH A . G 4 HOH 7 105 15 HOH HOH A . G 4 HOH 8 106 22 HOH HOH A . G 4 HOH 9 107 24 HOH HOH A . G 4 HOH 10 108 25 HOH HOH A . G 4 HOH 11 109 26 HOH HOH A . G 4 HOH 12 110 27 HOH HOH A . G 4 HOH 13 111 28 HOH HOH A . G 4 HOH 14 112 33 HOH HOH A . G 4 HOH 15 113 34 HOH HOH A . G 4 HOH 16 114 36 HOH HOH A . G 4 HOH 17 115 39 HOH HOH A . G 4 HOH 18 116 41 HOH HOH A . G 4 HOH 19 117 42 HOH HOH A . G 4 HOH 20 118 44 HOH HOH A . G 4 HOH 21 119 48 HOH HOH A . G 4 HOH 22 120 49 HOH HOH A . G 4 HOH 23 121 50 HOH HOH A . G 4 HOH 24 122 52 HOH HOH A . G 4 HOH 25 123 53 HOH HOH A . G 4 HOH 26 124 54 HOH HOH A . G 4 HOH 27 125 56 HOH HOH A . G 4 HOH 28 126 57 HOH HOH A . G 4 HOH 29 127 58 HOH HOH A . G 4 HOH 30 128 59 HOH HOH A . G 4 HOH 31 129 60 HOH HOH A . G 4 HOH 32 130 61 HOH HOH A . G 4 HOH 33 131 63 HOH HOH A . G 4 HOH 34 132 64 HOH HOH A . G 4 HOH 35 133 65 HOH HOH A . G 4 HOH 36 134 66 HOH HOH A . G 4 HOH 37 135 67 HOH HOH A . G 4 HOH 38 136 69 HOH HOH A . G 4 HOH 39 137 70 HOH HOH A . G 4 HOH 40 138 74 HOH HOH A . G 4 HOH 41 139 75 HOH HOH A . G 4 HOH 42 140 79 HOH HOH A . G 4 HOH 43 141 80 HOH HOH A . G 4 HOH 44 142 81 HOH HOH A . G 4 HOH 45 143 83 HOH HOH A . G 4 HOH 46 144 85 HOH HOH A . G 4 HOH 47 145 86 HOH HOH A . G 4 HOH 48 146 87 HOH HOH A . G 4 HOH 49 147 88 HOH HOH A . G 4 HOH 50 148 91 HOH HOH A . G 4 HOH 51 149 100 HOH HOH A . G 4 HOH 52 150 102 HOH HOH A . G 4 HOH 53 151 103 HOH HOH A . G 4 HOH 54 152 104 HOH HOH A . G 4 HOH 55 153 110 HOH HOH A . G 4 HOH 56 154 112 HOH HOH A . G 4 HOH 57 155 115 HOH HOH A . G 4 HOH 58 156 116 HOH HOH A . G 4 HOH 59 157 117 HOH HOH A . G 4 HOH 60 158 121 HOH HOH A . G 4 HOH 61 159 125 HOH HOH A . G 4 HOH 62 160 126 HOH HOH A . G 4 HOH 63 161 127 HOH HOH A . G 4 HOH 64 162 128 HOH HOH A . G 4 HOH 65 163 129 HOH HOH A . G 4 HOH 66 164 130 HOH HOH A . G 4 HOH 67 165 131 HOH HOH A . G 4 HOH 68 166 132 HOH HOH A . G 4 HOH 69 167 133 HOH HOH A . H 4 HOH 1 100 1 HOH HOH B . H 4 HOH 2 101 3 HOH HOH B . H 4 HOH 3 102 5 HOH HOH B . H 4 HOH 4 103 6 HOH HOH B . H 4 HOH 5 104 8 HOH HOH B . H 4 HOH 6 105 11 HOH HOH B . H 4 HOH 7 106 13 HOH HOH B . H 4 HOH 8 107 17 HOH HOH B . H 4 HOH 9 108 19 HOH HOH B . H 4 HOH 10 109 20 HOH HOH B . H 4 HOH 11 110 29 HOH HOH B . H 4 HOH 12 111 30 HOH HOH B . H 4 HOH 13 112 37 HOH HOH B . H 4 HOH 14 113 38 HOH HOH B . H 4 HOH 15 114 40 HOH HOH B . H 4 HOH 16 115 43 HOH HOH B . H 4 HOH 17 116 45 HOH HOH B . H 4 HOH 18 117 62 HOH HOH B . H 4 HOH 19 118 68 HOH HOH B . H 4 HOH 20 119 71 HOH HOH B . H 4 HOH 21 120 76 HOH HOH B . H 4 HOH 22 121 82 HOH HOH B . H 4 HOH 23 122 84 HOH HOH B . H 4 HOH 24 123 89 HOH HOH B . H 4 HOH 25 124 94 HOH HOH B . H 4 HOH 26 125 96 HOH HOH B . H 4 HOH 27 126 101 HOH HOH B . H 4 HOH 28 127 105 HOH HOH B . H 4 HOH 29 128 106 HOH HOH B . H 4 HOH 30 129 109 HOH HOH B . H 4 HOH 31 130 111 HOH HOH B . H 4 HOH 32 131 119 HOH HOH B . H 4 HOH 33 132 122 HOH HOH B . H 4 HOH 34 133 123 HOH HOH B . H 4 HOH 35 134 124 HOH HOH B . I 4 HOH 1 98 4 HOH HOH C . I 4 HOH 2 99 16 HOH HOH C . I 4 HOH 3 100 18 HOH HOH C . I 4 HOH 4 101 21 HOH HOH C . I 4 HOH 5 102 23 HOH HOH C . I 4 HOH 6 103 31 HOH HOH C . I 4 HOH 7 104 32 HOH HOH C . I 4 HOH 8 105 35 HOH HOH C . I 4 HOH 9 106 46 HOH HOH C . I 4 HOH 10 107 47 HOH HOH C . I 4 HOH 11 108 51 HOH HOH C . I 4 HOH 12 109 55 HOH HOH C . I 4 HOH 13 110 72 HOH HOH C . I 4 HOH 14 111 73 HOH HOH C . I 4 HOH 15 112 77 HOH HOH C . I 4 HOH 16 113 78 HOH HOH C . I 4 HOH 17 114 90 HOH HOH C . I 4 HOH 18 115 92 HOH HOH C . I 4 HOH 19 116 93 HOH HOH C . I 4 HOH 20 117 95 HOH HOH C . I 4 HOH 21 118 97 HOH HOH C . I 4 HOH 22 119 98 HOH HOH C . I 4 HOH 23 120 99 HOH HOH C . I 4 HOH 24 121 107 HOH HOH C . I 4 HOH 25 122 108 HOH HOH C . I 4 HOH 26 123 113 HOH HOH C . I 4 HOH 27 124 114 HOH HOH C . I 4 HOH 28 125 118 HOH HOH C . I 4 HOH 29 126 120 HOH HOH C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GLU 43 ? OE1 ? A GLU 43 OE1 2 1 Y 0 A GLU 43 ? OE2 ? A GLU 43 OE2 3 1 Y 0 B ASN 33 ? OD1 ? B ASN 33 OD1 4 1 Y 0 B ASN 33 ? ND2 ? B ASN 33 ND2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _cell.entry_id 3D4A _cell.length_a 101.521 _cell.length_b 65.913 _cell.length_c 56.966 _cell.angle_alpha 90.00 _cell.angle_beta 100.92 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3D4A _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3D4A _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.86 _exptl_crystal.density_percent_sol 56.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.2 _exptl_crystal_grow.pdbx_details 'ammonium sulfate, phosphate buffer, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2001-11-15 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X31' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X31 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.1 # _reflns.entry_id 3D4A _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 2.20 _reflns.d_resolution_low 20 _reflns.number_all 16671 _reflns.number_obs 16671 _reflns.percent_possible_obs 88.4 _reflns.pdbx_Rmerge_I_obs 0.038 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.0 _reflns.B_iso_Wilson_estimate 43.3 _reflns.pdbx_redundancy 1.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.257 _reflns_shell.percent_possible_all 59.7 _reflns_shell.Rmerge_I_obs 0.162 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.1 _reflns_shell.pdbx_redundancy 1.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 456 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3D4A _refine.ls_number_reflns_obs 15801 _refine.ls_number_reflns_all 16671 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.88 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 88.31 _refine.ls_R_factor_obs 0.2228 _refine.ls_R_factor_all 0.2228 _refine.ls_R_factor_R_work 0.22047 _refine.ls_R_factor_R_free 0.2646 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 869 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.933 _refine.correlation_coeff_Fo_to_Fc_free 0.912 _refine.B_iso_mean 31.703 _refine.aniso_B[1][1] -1.46 _refine.aniso_B[2][2] 3.82 _refine.aniso_B[3][3] -2.57 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.54 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 1py3' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.322 _refine.pdbx_overall_ESU_R_Free 0.241 _refine.overall_SU_ML 0.178 _refine.overall_SU_B 12.601 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3D4A _refine_analyze.Luzzati_coordinate_error_obs 0.014 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 0.0 _refine_analyze.Luzzati_coordinate_error_free 0.235 _refine_analyze.Luzzati_sigma_a_free 0.332 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2232 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 133 _refine_hist.number_atoms_total 2399 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 19.88 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 2340 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.520 1.969 ? 3186 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.926 5.000 ? 274 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.583 22.602 ? 123 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 19.548 15.000 ? 349 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.128 15.000 ? 26 'X-RAY DIFFRACTION' ? r_chiral_restr 0.108 0.200 ? 320 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1867 'X-RAY DIFFRACTION' ? r_nbd_refined 0.208 0.200 ? 1049 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.302 0.200 ? 1557 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.186 0.200 ? 146 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.304 0.200 ? 52 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.280 0.200 ? 10 'X-RAY DIFFRACTION' ? r_mcbond_it 0.618 1.500 ? 1407 'X-RAY DIFFRACTION' ? r_mcangle_it 1.041 2.000 ? 2245 'X-RAY DIFFRACTION' ? r_scbond_it 1.538 3.000 ? 1061 'X-RAY DIFFRACTION' ? r_scangle_it 2.327 4.500 ? 941 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.number_reflns_R_work 790 _refine_ls_shell.R_factor_R_work 0.235 _refine_ls_shell.percent_reflns_obs 61.15 _refine_ls_shell.R_factor_R_free 0.332 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 49 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 456 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3D4A _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3D4A _struct.title ;Crystal structure of ribonuclease Sa2 with 3'-GMP obtained by ligand diffusion ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3D4A _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'ribonuclease, mononucleotide, protein-mononucleotide complex, Hydrolase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q53752_STRAU _struct_ref.pdbx_db_accession Q53752 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ADPALADVCRTKLPSQAQDTLALIAKNGPYPYNRDGVVFENRESRLPKKGNGYYHEFTVVTPGSNDRGTRRVVTGGYGEQ YWSPDHYATFQEIDPRC ; _struct_ref.pdbx_align_begin 67 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3D4A A 1 ? 97 ? Q53752 67 ? 163 ? 1 97 2 1 3D4A B 1 ? 97 ? Q53752 67 ? 163 ? 1 97 3 1 3D4A C 1 ? 97 ? Q53752 67 ? 163 ? 1 97 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,G 2 1 B,E,F,H 3 1 C,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 11 ? LEU A 13 ? THR A 11 LEU A 13 5 ? 3 HELX_P HELX_P2 2 PRO A 14 ? ASN A 27 ? PRO A 14 ASN A 27 1 ? 14 HELX_P HELX_P3 3 THR B 11 ? LEU B 13 ? THR B 11 LEU B 13 5 ? 3 HELX_P HELX_P4 4 PRO B 14 ? LYS B 26 ? PRO B 14 LYS B 26 1 ? 13 HELX_P HELX_P5 5 THR C 11 ? LEU C 13 ? THR C 11 LEU C 13 5 ? 3 HELX_P HELX_P6 6 PRO C 14 ? ASN C 27 ? PRO C 14 ASN C 27 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 97 SG ? ? A CYS 9 A CYS 97 1_555 ? ? ? ? ? ? ? 2.002 ? ? disulf2 disulf ? ? B CYS 9 SG ? ? ? 1_555 B CYS 97 SG ? ? B CYS 9 B CYS 97 1_555 ? ? ? ? ? ? ? 2.048 ? ? disulf3 disulf ? ? C CYS 9 SG ? ? ? 1_555 C CYS 97 SG ? ? C CYS 9 C CYS 97 1_555 ? ? ? ? ? ? ? 2.034 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 9 ? CYS A 97 ? CYS A 9 ? 1_555 CYS A 97 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS B 9 ? CYS B 97 ? CYS B 9 ? 1_555 CYS B 97 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS C 9 ? CYS C 97 ? CYS C 9 ? 1_555 CYS C 97 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 28 A . ? GLY 28 A PRO 29 A ? PRO 29 A 1 -2.47 2 GLY 28 B . ? GLY 28 B PRO 29 B ? PRO 29 B 1 7.89 3 GLY 28 C . ? GLY 28 C PRO 29 C ? PRO 29 C 1 4.33 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 5 ? C ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 6 ? CYS A 9 ? ALA A 6 CYS A 9 A 2 GLN A 91 ? ASP A 94 ? GLN A 91 ASP A 94 A 3 GLN A 80 ? SER A 83 ? GLN A 80 SER A 83 A 4 ARG A 71 ? THR A 74 ? ARG A 71 THR A 74 A 5 TYR A 54 ? THR A 58 ? TYR A 54 THR A 58 A 6 VAL A 38 ? PHE A 39 ? VAL A 38 PHE A 39 B 1 ALA B 6 ? CYS B 9 ? ALA B 6 CYS B 9 B 2 GLN B 91 ? ASP B 94 ? GLN B 91 ASP B 94 B 3 GLN B 80 ? SER B 83 ? GLN B 80 SER B 83 B 4 ARG B 71 ? THR B 74 ? ARG B 71 THR B 74 B 5 HIS B 55 ? THR B 58 ? HIS B 55 THR B 58 C 1 ALA C 6 ? CYS C 9 ? ALA C 6 CYS C 9 C 2 GLN C 91 ? ASP C 94 ? GLN C 91 ASP C 94 C 3 GLN C 80 ? SER C 83 ? GLN C 80 SER C 83 C 4 ARG C 71 ? THR C 74 ? ARG C 71 THR C 74 C 5 TYR C 54 ? THR C 58 ? TYR C 54 THR C 58 C 6 VAL C 37 ? PHE C 39 ? VAL C 37 PHE C 39 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 8 ? N VAL A 8 O ASP A 94 ? O ASP A 94 A 2 3 O GLN A 91 ? O GLN A 91 N TRP A 82 ? N TRP A 82 A 3 4 O SER A 83 ? O SER A 83 N ARG A 71 ? N ARG A 71 A 4 5 O VAL A 72 ? O VAL A 72 N PHE A 57 ? N PHE A 57 A 5 6 O TYR A 54 ? O TYR A 54 N PHE A 39 ? N PHE A 39 B 1 2 N VAL B 8 ? N VAL B 8 O ASP B 94 ? O ASP B 94 B 2 3 O GLN B 91 ? O GLN B 91 N TRP B 82 ? N TRP B 82 B 3 4 O SER B 83 ? O SER B 83 N ARG B 71 ? N ARG B 71 B 4 5 O VAL B 72 ? O VAL B 72 N PHE B 57 ? N PHE B 57 C 1 2 N VAL C 8 ? N VAL C 8 O ASP C 94 ? O ASP C 94 C 2 3 O GLN C 91 ? O GLN C 91 N TRP C 82 ? N TRP C 82 C 3 4 O TYR C 81 ? O TYR C 81 N VAL C 73 ? N VAL C 73 C 4 5 O VAL C 72 ? O VAL C 72 N PHE C 57 ? N PHE C 57 C 5 6 O GLU C 56 ? O GLU C 56 N VAL C 37 ? N VAL C 37 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 98 ? 7 'BINDING SITE FOR RESIDUE SO4 A 98' AC2 Software B SO4 98 ? 4 'BINDING SITE FOR RESIDUE SO4 B 98' AC3 Software B 3GP 99 ? 12 'BINDING SITE FOR RESIDUE 3GP B 99' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ARG A 34 ? ARG A 34 . ? 1_555 ? 2 AC1 7 GLU A 56 ? GLU A 56 . ? 1_555 ? 3 AC1 7 ARG A 67 ? ARG A 67 . ? 1_555 ? 4 AC1 7 ARG A 71 ? ARG A 71 . ? 1_555 ? 5 AC1 7 HIS A 86 ? HIS A 86 . ? 1_555 ? 6 AC1 7 TYR A 87 ? TYR A 87 . ? 1_555 ? 7 AC1 7 ARG C 45 ? ARG C 45 . ? 1_555 ? 8 AC2 4 SER A 15 ? SER A 15 . ? 4_645 ? 9 AC2 4 HOH G . ? HOH A 139 . ? 4_645 ? 10 AC2 4 GLU B 43 ? GLU B 43 . ? 1_555 ? 11 AC2 4 ARG B 45 ? ARG B 45 . ? 1_555 ? 12 AC3 12 VAL B 37 ? VAL B 37 . ? 1_555 ? 13 AC3 12 VAL B 38 ? VAL B 38 . ? 1_555 ? 14 AC3 12 PHE B 39 ? PHE B 39 . ? 1_555 ? 15 AC3 12 GLU B 40 ? GLU B 40 . ? 1_555 ? 16 AC3 12 ASN B 41 ? ASN B 41 . ? 1_555 ? 17 AC3 12 ARG B 42 ? ARG B 42 . ? 1_555 ? 18 AC3 12 GLU B 43 ? GLU B 43 . ? 1_555 ? 19 AC3 12 GLU B 56 ? GLU B 56 . ? 1_555 ? 20 AC3 12 ARG B 67 ? ARG B 67 . ? 1_555 ? 21 AC3 12 ARG B 71 ? ARG B 71 . ? 1_555 ? 22 AC3 12 HIS B 86 ? HIS B 86 . ? 1_555 ? 23 AC3 12 TYR B 87 ? TYR B 87 . ? 1_555 ? # _pdbx_entry_details.entry_id 3D4A _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 126 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 163 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A GLU 43 ? ? OE1 A GLU 43 ? ? 1.642 1.252 0.390 0.011 N 2 1 CD A GLU 43 ? ? OE2 A GLU 43 ? ? 1.685 1.252 0.433 0.011 N 3 1 CZ C ARG 96 ? ? NH1 C ARG 96 ? ? 1.507 1.326 0.181 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OE1 A GLU 43 ? ? CD A GLU 43 ? ? OE2 A GLU 43 ? ? 82.55 123.30 -40.75 1.20 N 2 1 NE C ARG 96 ? ? CZ C ARG 96 ? ? NH2 C ARG 96 ? ? 114.11 120.30 -6.19 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 64 ? ? -103.47 -153.70 2 1 ASP A 85 ? ? -140.92 46.72 3 1 ARG B 67 ? ? -124.90 -73.53 4 1 ASP C 85 ? ? -140.69 37.69 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id GLU _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 43 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.197 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 105 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 68.0254 5.8840 -27.7112 0.0642 0.0571 -0.0381 -0.1353 0.0237 -0.0055 3.4822 8.7593 4.6643 -1.6176 -0.0193 1.0642 0.0687 0.0011 0.2850 -0.0062 -0.1204 0.1755 -0.6898 0.4855 0.0517 'X-RAY DIFFRACTION' 2 ? refined 61.7789 -4.6101 -18.2193 0.0231 0.0672 -0.0040 -0.0193 0.0031 0.0038 2.6412 1.8382 2.3333 -0.0023 -0.3765 0.3677 0.0859 -0.2551 -0.0319 0.1799 -0.1007 -0.0197 0.0131 0.2324 0.0147 'X-RAY DIFFRACTION' 3 ? refined 79.1009 -7.3720 -19.0699 0.2990 0.3640 0.7940 0.0284 -0.1822 0.2223 1.1078 21.6434 41.5159 4.8496 0.7424 7.3712 2.4659 1.4040 1.9866 0.7683 -0.6541 -3.8134 0.5927 4.8435 -1.8117 'X-RAY DIFFRACTION' 4 ? refined 63.7492 3.3203 -20.5736 0.0418 0.1294 -0.0108 -0.0657 0.0105 -0.0008 2.4955 2.0750 2.1890 1.0691 -0.2913 0.0671 0.1457 -0.0698 0.2486 -0.0215 -0.1564 -0.0566 -0.3983 0.2444 0.0107 'X-RAY DIFFRACTION' 5 ? refined 65.8225 -25.5388 12.9650 -0.0044 -0.0401 0.0362 0.1102 0.0079 -0.0401 5.0550 0.6239 6.0020 -1.5501 1.8775 -1.4635 -0.0159 0.6878 -0.2423 -0.0689 0.0456 0.0685 0.6554 0.0153 -0.0297 'X-RAY DIFFRACTION' 6 ? refined 61.3631 -20.8848 25.0703 -0.0656 0.0185 0.0268 0.0678 0.0339 0.0561 7.8747 5.1486 5.7262 -0.9993 2.3132 -1.1446 -0.0107 -0.2315 -0.4829 0.3513 0.2355 0.5522 0.1450 -0.3887 -0.2248 'X-RAY DIFFRACTION' 7 ? refined 62.7189 -22.8070 20.9308 -0.0138 0.1064 0.0618 0.0666 0.0104 0.0090 2.7917 3.7553 5.3265 -1.8163 0.3570 0.0819 0.0373 0.2924 -0.5184 0.2007 -0.1470 0.5090 0.7455 -0.0421 0.1097 'X-RAY DIFFRACTION' 8 ? refined 69.0251 -26.4320 17.5610 -0.0628 -0.0483 0.1525 0.1828 0.0173 -0.0210 6.7565 2.0343 21.6018 1.7472 -1.8533 -5.1207 0.4779 0.1795 -0.4197 -0.1564 -0.2320 0.2828 0.3323 0.5868 -0.2459 'X-RAY DIFFRACTION' 9 ? refined 64.3181 -5.1274 11.4941 -0.0159 0.1445 -0.0600 0.0321 0.0014 0.0655 7.2661 1.7610 2.6377 -0.6202 0.0395 0.3693 0.0915 0.4020 0.0470 0.0333 -0.1866 -0.1414 -0.3675 0.1774 0.0951 'X-RAY DIFFRACTION' 10 ? refined 59.9154 -9.2867 -0.1144 -0.0145 0.3005 -0.0539 0.1142 -0.0040 0.0123 3.0398 2.4161 4.5533 -1.3813 -1.6910 0.0709 0.1872 0.6865 -0.1218 -0.1608 -0.2661 0.0552 -0.3115 -0.5653 0.0789 'X-RAY DIFFRACTION' 11 ? refined 64.2110 -6.8802 5.0201 0.0123 0.2765 -0.0563 0.0446 0.0117 0.0576 6.0330 9.1277 6.4182 2.1122 -2.9938 -4.3852 0.6438 0.5704 0.3194 0.2934 -0.4852 0.2111 -0.6852 0.1712 -0.1586 'X-RAY DIFFRACTION' 12 ? refined 70.0593 -8.7779 3.4965 -0.1693 0.2140 -0.0256 0.0531 -0.0098 0.1161 16.0837 3.4086 26.3462 -6.6068 13.0876 -2.0740 0.7331 1.1679 -0.3097 -0.1247 -0.8617 -0.0044 -0.3101 0.7680 0.1286 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 5 A 5 A 19 A 19 ? 'X-RAY DIFFRACTION' ? 2 2 A 20 A 20 A 61 A 61 ? 'X-RAY DIFFRACTION' ? 3 3 A 62 A 62 A 67 A 67 ? 'X-RAY DIFFRACTION' ? 4 4 A 68 A 68 A 97 A 97 ? 'X-RAY DIFFRACTION' ? 5 5 B 1 B 1 B 25 B 25 ? 'X-RAY DIFFRACTION' ? 6 6 B 26 B 26 B 49 B 49 ? 'X-RAY DIFFRACTION' ? 7 7 B 50 B 50 B 82 B 82 ? 'X-RAY DIFFRACTION' ? 8 8 B 83 B 83 B 97 B 97 ? 'X-RAY DIFFRACTION' ? 9 9 C 5 C 5 C 37 C 37 ? 'X-RAY DIFFRACTION' ? 10 10 C 38 C 38 C 62 C 62 ? 'X-RAY DIFFRACTION' ? 11 11 C 67 C 67 C 84 C 84 ? 'X-RAY DIFFRACTION' ? 12 12 C 85 C 85 C 97 C 97 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 1 ? A ALA 1 2 1 Y 1 A ASP 2 ? A ASP 2 3 1 Y 1 B SER 64 ? B SER 64 4 1 Y 1 B ASN 65 ? B ASN 65 5 1 Y 1 C ALA 1 ? C ALA 1 6 1 Y 1 C ASP 2 ? C ASP 2 7 1 Y 1 C PRO 3 ? C PRO 3 8 1 Y 1 C ALA 4 ? C ALA 4 9 1 Y 1 C GLY 63 ? C GLY 63 10 1 Y 1 C SER 64 ? C SER 64 11 1 Y 1 C ASN 65 ? C ASN 65 12 1 Y 1 C ASP 66 ? C ASP 66 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3GP P P N N 1 3GP O1P O N N 2 3GP O2P O N N 3 3GP O3P O N N 4 3GP "O5'" O N N 5 3GP "C5'" C N N 6 3GP "C4'" C N R 7 3GP "O4'" O N N 8 3GP "C3'" C N S 9 3GP "O3'" O N N 10 3GP "C2'" C N R 11 3GP "O2'" O N N 12 3GP "C1'" C N R 13 3GP N9 N Y N 14 3GP C8 C Y N 15 3GP N7 N Y N 16 3GP C5 C Y N 17 3GP C6 C N N 18 3GP O6 O N N 19 3GP N1 N N N 20 3GP C2 C N N 21 3GP N2 N N N 22 3GP N3 N N N 23 3GP C4 C Y N 24 3GP HOP2 H N N 25 3GP HOP3 H N N 26 3GP "HO5'" H N N 27 3GP "H5'1" H N N 28 3GP "H5'2" H N N 29 3GP "H4'" H N N 30 3GP "H3'" H N N 31 3GP "H2'" H N N 32 3GP "HO2'" H N N 33 3GP "H1'" H N N 34 3GP H8 H N N 35 3GP HN1 H N N 36 3GP HN21 H N N 37 3GP HN22 H N N 38 ALA N N N N 39 ALA CA C N S 40 ALA C C N N 41 ALA O O N N 42 ALA CB C N N 43 ALA OXT O N N 44 ALA H H N N 45 ALA H2 H N N 46 ALA HA H N N 47 ALA HB1 H N N 48 ALA HB2 H N N 49 ALA HB3 H N N 50 ALA HXT H N N 51 ARG N N N N 52 ARG CA C N S 53 ARG C C N N 54 ARG O O N N 55 ARG CB C N N 56 ARG CG C N N 57 ARG CD C N N 58 ARG NE N N N 59 ARG CZ C N N 60 ARG NH1 N N N 61 ARG NH2 N N N 62 ARG OXT O N N 63 ARG H H N N 64 ARG H2 H N N 65 ARG HA H N N 66 ARG HB2 H N N 67 ARG HB3 H N N 68 ARG HG2 H N N 69 ARG HG3 H N N 70 ARG HD2 H N N 71 ARG HD3 H N N 72 ARG HE H N N 73 ARG HH11 H N N 74 ARG HH12 H N N 75 ARG HH21 H N N 76 ARG HH22 H N N 77 ARG HXT H N N 78 ASN N N N N 79 ASN CA C N S 80 ASN C C N N 81 ASN O O N N 82 ASN CB C N N 83 ASN CG C N N 84 ASN OD1 O N N 85 ASN ND2 N N N 86 ASN OXT O N N 87 ASN H H N N 88 ASN H2 H N N 89 ASN HA H N N 90 ASN HB2 H N N 91 ASN HB3 H N N 92 ASN HD21 H N N 93 ASN HD22 H N N 94 ASN HXT H N N 95 ASP N N N N 96 ASP CA C N S 97 ASP C C N N 98 ASP O O N N 99 ASP CB C N N 100 ASP CG C N N 101 ASP OD1 O N N 102 ASP OD2 O N N 103 ASP OXT O N N 104 ASP H H N N 105 ASP H2 H N N 106 ASP HA H N N 107 ASP HB2 H N N 108 ASP HB3 H N N 109 ASP HD2 H N N 110 ASP HXT H N N 111 CYS N N N N 112 CYS CA C N R 113 CYS C C N N 114 CYS O O N N 115 CYS CB C N N 116 CYS SG S N N 117 CYS OXT O N N 118 CYS H H N N 119 CYS H2 H N N 120 CYS HA H N N 121 CYS HB2 H N N 122 CYS HB3 H N N 123 CYS HG H N N 124 CYS HXT H N N 125 GLN N N N N 126 GLN CA C N S 127 GLN C C N N 128 GLN O O N N 129 GLN CB C N N 130 GLN CG C N N 131 GLN CD C N N 132 GLN OE1 O N N 133 GLN NE2 N N N 134 GLN OXT O N N 135 GLN H H N N 136 GLN H2 H N N 137 GLN HA H N N 138 GLN HB2 H N N 139 GLN HB3 H N N 140 GLN HG2 H N N 141 GLN HG3 H N N 142 GLN HE21 H N N 143 GLN HE22 H N N 144 GLN HXT H N N 145 GLU N N N N 146 GLU CA C N S 147 GLU C C N N 148 GLU O O N N 149 GLU CB C N N 150 GLU CG C N N 151 GLU CD C N N 152 GLU OE1 O N N 153 GLU OE2 O N N 154 GLU OXT O N N 155 GLU H H N N 156 GLU H2 H N N 157 GLU HA H N N 158 GLU HB2 H N N 159 GLU HB3 H N N 160 GLU HG2 H N N 161 GLU HG3 H N N 162 GLU HE2 H N N 163 GLU HXT H N N 164 GLY N N N N 165 GLY CA C N N 166 GLY C C N N 167 GLY O O N N 168 GLY OXT O N N 169 GLY H H N N 170 GLY H2 H N N 171 GLY HA2 H N N 172 GLY HA3 H N N 173 GLY HXT H N N 174 HIS N N N N 175 HIS CA C N S 176 HIS C C N N 177 HIS O O N N 178 HIS CB C N N 179 HIS CG C Y N 180 HIS ND1 N Y N 181 HIS CD2 C Y N 182 HIS CE1 C Y N 183 HIS NE2 N Y N 184 HIS OXT O N N 185 HIS H H N N 186 HIS H2 H N N 187 HIS HA H N N 188 HIS HB2 H N N 189 HIS HB3 H N N 190 HIS HD1 H N N 191 HIS HD2 H N N 192 HIS HE1 H N N 193 HIS HE2 H N N 194 HIS HXT H N N 195 HOH O O N N 196 HOH H1 H N N 197 HOH H2 H N N 198 ILE N N N N 199 ILE CA C N S 200 ILE C C N N 201 ILE O O N N 202 ILE CB C N S 203 ILE CG1 C N N 204 ILE CG2 C N N 205 ILE CD1 C N N 206 ILE OXT O N N 207 ILE H H N N 208 ILE H2 H N N 209 ILE HA H N N 210 ILE HB H N N 211 ILE HG12 H N N 212 ILE HG13 H N N 213 ILE HG21 H N N 214 ILE HG22 H N N 215 ILE HG23 H N N 216 ILE HD11 H N N 217 ILE HD12 H N N 218 ILE HD13 H N N 219 ILE HXT H N N 220 LEU N N N N 221 LEU CA C N S 222 LEU C C N N 223 LEU O O N N 224 LEU CB C N N 225 LEU CG C N N 226 LEU CD1 C N N 227 LEU CD2 C N N 228 LEU OXT O N N 229 LEU H H N N 230 LEU H2 H N N 231 LEU HA H N N 232 LEU HB2 H N N 233 LEU HB3 H N N 234 LEU HG H N N 235 LEU HD11 H N N 236 LEU HD12 H N N 237 LEU HD13 H N N 238 LEU HD21 H N N 239 LEU HD22 H N N 240 LEU HD23 H N N 241 LEU HXT H N N 242 LYS N N N N 243 LYS CA C N S 244 LYS C C N N 245 LYS O O N N 246 LYS CB C N N 247 LYS CG C N N 248 LYS CD C N N 249 LYS CE C N N 250 LYS NZ N N N 251 LYS OXT O N N 252 LYS H H N N 253 LYS H2 H N N 254 LYS HA H N N 255 LYS HB2 H N N 256 LYS HB3 H N N 257 LYS HG2 H N N 258 LYS HG3 H N N 259 LYS HD2 H N N 260 LYS HD3 H N N 261 LYS HE2 H N N 262 LYS HE3 H N N 263 LYS HZ1 H N N 264 LYS HZ2 H N N 265 LYS HZ3 H N N 266 LYS HXT H N N 267 PHE N N N N 268 PHE CA C N S 269 PHE C C N N 270 PHE O O N N 271 PHE CB C N N 272 PHE CG C Y N 273 PHE CD1 C Y N 274 PHE CD2 C Y N 275 PHE CE1 C Y N 276 PHE CE2 C Y N 277 PHE CZ C Y N 278 PHE OXT O N N 279 PHE H H N N 280 PHE H2 H N N 281 PHE HA H N N 282 PHE HB2 H N N 283 PHE HB3 H N N 284 PHE HD1 H N N 285 PHE HD2 H N N 286 PHE HE1 H N N 287 PHE HE2 H N N 288 PHE HZ H N N 289 PHE HXT H N N 290 PRO N N N N 291 PRO CA C N S 292 PRO C C N N 293 PRO O O N N 294 PRO CB C N N 295 PRO CG C N N 296 PRO CD C N N 297 PRO OXT O N N 298 PRO H H N N 299 PRO HA H N N 300 PRO HB2 H N N 301 PRO HB3 H N N 302 PRO HG2 H N N 303 PRO HG3 H N N 304 PRO HD2 H N N 305 PRO HD3 H N N 306 PRO HXT H N N 307 SER N N N N 308 SER CA C N S 309 SER C C N N 310 SER O O N N 311 SER CB C N N 312 SER OG O N N 313 SER OXT O N N 314 SER H H N N 315 SER H2 H N N 316 SER HA H N N 317 SER HB2 H N N 318 SER HB3 H N N 319 SER HG H N N 320 SER HXT H N N 321 SO4 S S N N 322 SO4 O1 O N N 323 SO4 O2 O N N 324 SO4 O3 O N N 325 SO4 O4 O N N 326 THR N N N N 327 THR CA C N S 328 THR C C N N 329 THR O O N N 330 THR CB C N R 331 THR OG1 O N N 332 THR CG2 C N N 333 THR OXT O N N 334 THR H H N N 335 THR H2 H N N 336 THR HA H N N 337 THR HB H N N 338 THR HG1 H N N 339 THR HG21 H N N 340 THR HG22 H N N 341 THR HG23 H N N 342 THR HXT H N N 343 TRP N N N N 344 TRP CA C N S 345 TRP C C N N 346 TRP O O N N 347 TRP CB C N N 348 TRP CG C Y N 349 TRP CD1 C Y N 350 TRP CD2 C Y N 351 TRP NE1 N Y N 352 TRP CE2 C Y N 353 TRP CE3 C Y N 354 TRP CZ2 C Y N 355 TRP CZ3 C Y N 356 TRP CH2 C Y N 357 TRP OXT O N N 358 TRP H H N N 359 TRP H2 H N N 360 TRP HA H N N 361 TRP HB2 H N N 362 TRP HB3 H N N 363 TRP HD1 H N N 364 TRP HE1 H N N 365 TRP HE3 H N N 366 TRP HZ2 H N N 367 TRP HZ3 H N N 368 TRP HH2 H N N 369 TRP HXT H N N 370 TYR N N N N 371 TYR CA C N S 372 TYR C C N N 373 TYR O O N N 374 TYR CB C N N 375 TYR CG C Y N 376 TYR CD1 C Y N 377 TYR CD2 C Y N 378 TYR CE1 C Y N 379 TYR CE2 C Y N 380 TYR CZ C Y N 381 TYR OH O N N 382 TYR OXT O N N 383 TYR H H N N 384 TYR H2 H N N 385 TYR HA H N N 386 TYR HB2 H N N 387 TYR HB3 H N N 388 TYR HD1 H N N 389 TYR HD2 H N N 390 TYR HE1 H N N 391 TYR HE2 H N N 392 TYR HH H N N 393 TYR HXT H N N 394 VAL N N N N 395 VAL CA C N S 396 VAL C C N N 397 VAL O O N N 398 VAL CB C N N 399 VAL CG1 C N N 400 VAL CG2 C N N 401 VAL OXT O N N 402 VAL H H N N 403 VAL H2 H N N 404 VAL HA H N N 405 VAL HB H N N 406 VAL HG11 H N N 407 VAL HG12 H N N 408 VAL HG13 H N N 409 VAL HG21 H N N 410 VAL HG22 H N N 411 VAL HG23 H N N 412 VAL HXT H N N 413 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3GP P O1P doub N N 1 3GP P O2P sing N N 2 3GP P O3P sing N N 3 3GP P "O3'" sing N N 4 3GP O2P HOP2 sing N N 5 3GP O3P HOP3 sing N N 6 3GP "O5'" "C5'" sing N N 7 3GP "O5'" "HO5'" sing N N 8 3GP "C5'" "C4'" sing N N 9 3GP "C5'" "H5'1" sing N N 10 3GP "C5'" "H5'2" sing N N 11 3GP "C4'" "O4'" sing N N 12 3GP "C4'" "C3'" sing N N 13 3GP "C4'" "H4'" sing N N 14 3GP "O4'" "C1'" sing N N 15 3GP "C3'" "O3'" sing N N 16 3GP "C3'" "C2'" sing N N 17 3GP "C3'" "H3'" sing N N 18 3GP "C2'" "O2'" sing N N 19 3GP "C2'" "C1'" sing N N 20 3GP "C2'" "H2'" sing N N 21 3GP "O2'" "HO2'" sing N N 22 3GP "C1'" N9 sing N N 23 3GP "C1'" "H1'" sing N N 24 3GP N9 C8 sing Y N 25 3GP N9 C4 sing Y N 26 3GP C8 N7 doub Y N 27 3GP C8 H8 sing N N 28 3GP N7 C5 sing Y N 29 3GP C5 C6 sing N N 30 3GP C5 C4 doub Y N 31 3GP C6 O6 doub N N 32 3GP C6 N1 sing N N 33 3GP N1 C2 sing N N 34 3GP N1 HN1 sing N N 35 3GP C2 N2 sing N N 36 3GP C2 N3 doub N N 37 3GP N2 HN21 sing N N 38 3GP N2 HN22 sing N N 39 3GP N3 C4 sing N N 40 ALA N CA sing N N 41 ALA N H sing N N 42 ALA N H2 sing N N 43 ALA CA C sing N N 44 ALA CA CB sing N N 45 ALA CA HA sing N N 46 ALA C O doub N N 47 ALA C OXT sing N N 48 ALA CB HB1 sing N N 49 ALA CB HB2 sing N N 50 ALA CB HB3 sing N N 51 ALA OXT HXT sing N N 52 ARG N CA sing N N 53 ARG N H sing N N 54 ARG N H2 sing N N 55 ARG CA C sing N N 56 ARG CA CB sing N N 57 ARG CA HA sing N N 58 ARG C O doub N N 59 ARG C OXT sing N N 60 ARG CB CG sing N N 61 ARG CB HB2 sing N N 62 ARG CB HB3 sing N N 63 ARG CG CD sing N N 64 ARG CG HG2 sing N N 65 ARG CG HG3 sing N N 66 ARG CD NE sing N N 67 ARG CD HD2 sing N N 68 ARG CD HD3 sing N N 69 ARG NE CZ sing N N 70 ARG NE HE sing N N 71 ARG CZ NH1 sing N N 72 ARG CZ NH2 doub N N 73 ARG NH1 HH11 sing N N 74 ARG NH1 HH12 sing N N 75 ARG NH2 HH21 sing N N 76 ARG NH2 HH22 sing N N 77 ARG OXT HXT sing N N 78 ASN N CA sing N N 79 ASN N H sing N N 80 ASN N H2 sing N N 81 ASN CA C sing N N 82 ASN CA CB sing N N 83 ASN CA HA sing N N 84 ASN C O doub N N 85 ASN C OXT sing N N 86 ASN CB CG sing N N 87 ASN CB HB2 sing N N 88 ASN CB HB3 sing N N 89 ASN CG OD1 doub N N 90 ASN CG ND2 sing N N 91 ASN ND2 HD21 sing N N 92 ASN ND2 HD22 sing N N 93 ASN OXT HXT sing N N 94 ASP N CA sing N N 95 ASP N H sing N N 96 ASP N H2 sing N N 97 ASP CA C sing N N 98 ASP CA CB sing N N 99 ASP CA HA sing N N 100 ASP C O doub N N 101 ASP C OXT sing N N 102 ASP CB CG sing N N 103 ASP CB HB2 sing N N 104 ASP CB HB3 sing N N 105 ASP CG OD1 doub N N 106 ASP CG OD2 sing N N 107 ASP OD2 HD2 sing N N 108 ASP OXT HXT sing N N 109 CYS N CA sing N N 110 CYS N H sing N N 111 CYS N H2 sing N N 112 CYS CA C sing N N 113 CYS CA CB sing N N 114 CYS CA HA sing N N 115 CYS C O doub N N 116 CYS C OXT sing N N 117 CYS CB SG sing N N 118 CYS CB HB2 sing N N 119 CYS CB HB3 sing N N 120 CYS SG HG sing N N 121 CYS OXT HXT sing N N 122 GLN N CA sing N N 123 GLN N H sing N N 124 GLN N H2 sing N N 125 GLN CA C sing N N 126 GLN CA CB sing N N 127 GLN CA HA sing N N 128 GLN C O doub N N 129 GLN C OXT sing N N 130 GLN CB CG sing N N 131 GLN CB HB2 sing N N 132 GLN CB HB3 sing N N 133 GLN CG CD sing N N 134 GLN CG HG2 sing N N 135 GLN CG HG3 sing N N 136 GLN CD OE1 doub N N 137 GLN CD NE2 sing N N 138 GLN NE2 HE21 sing N N 139 GLN NE2 HE22 sing N N 140 GLN OXT HXT sing N N 141 GLU N CA sing N N 142 GLU N H sing N N 143 GLU N H2 sing N N 144 GLU CA C sing N N 145 GLU CA CB sing N N 146 GLU CA HA sing N N 147 GLU C O doub N N 148 GLU C OXT sing N N 149 GLU CB CG sing N N 150 GLU CB HB2 sing N N 151 GLU CB HB3 sing N N 152 GLU CG CD sing N N 153 GLU CG HG2 sing N N 154 GLU CG HG3 sing N N 155 GLU CD OE1 doub N N 156 GLU CD OE2 sing N N 157 GLU OE2 HE2 sing N N 158 GLU OXT HXT sing N N 159 GLY N CA sing N N 160 GLY N H sing N N 161 GLY N H2 sing N N 162 GLY CA C sing N N 163 GLY CA HA2 sing N N 164 GLY CA HA3 sing N N 165 GLY C O doub N N 166 GLY C OXT sing N N 167 GLY OXT HXT sing N N 168 HIS N CA sing N N 169 HIS N H sing N N 170 HIS N H2 sing N N 171 HIS CA C sing N N 172 HIS CA CB sing N N 173 HIS CA HA sing N N 174 HIS C O doub N N 175 HIS C OXT sing N N 176 HIS CB CG sing N N 177 HIS CB HB2 sing N N 178 HIS CB HB3 sing N N 179 HIS CG ND1 sing Y N 180 HIS CG CD2 doub Y N 181 HIS ND1 CE1 doub Y N 182 HIS ND1 HD1 sing N N 183 HIS CD2 NE2 sing Y N 184 HIS CD2 HD2 sing N N 185 HIS CE1 NE2 sing Y N 186 HIS CE1 HE1 sing N N 187 HIS NE2 HE2 sing N N 188 HIS OXT HXT sing N N 189 HOH O H1 sing N N 190 HOH O H2 sing N N 191 ILE N CA sing N N 192 ILE N H sing N N 193 ILE N H2 sing N N 194 ILE CA C sing N N 195 ILE CA CB sing N N 196 ILE CA HA sing N N 197 ILE C O doub N N 198 ILE C OXT sing N N 199 ILE CB CG1 sing N N 200 ILE CB CG2 sing N N 201 ILE CB HB sing N N 202 ILE CG1 CD1 sing N N 203 ILE CG1 HG12 sing N N 204 ILE CG1 HG13 sing N N 205 ILE CG2 HG21 sing N N 206 ILE CG2 HG22 sing N N 207 ILE CG2 HG23 sing N N 208 ILE CD1 HD11 sing N N 209 ILE CD1 HD12 sing N N 210 ILE CD1 HD13 sing N N 211 ILE OXT HXT sing N N 212 LEU N CA sing N N 213 LEU N H sing N N 214 LEU N H2 sing N N 215 LEU CA C sing N N 216 LEU CA CB sing N N 217 LEU CA HA sing N N 218 LEU C O doub N N 219 LEU C OXT sing N N 220 LEU CB CG sing N N 221 LEU CB HB2 sing N N 222 LEU CB HB3 sing N N 223 LEU CG CD1 sing N N 224 LEU CG CD2 sing N N 225 LEU CG HG sing N N 226 LEU CD1 HD11 sing N N 227 LEU CD1 HD12 sing N N 228 LEU CD1 HD13 sing N N 229 LEU CD2 HD21 sing N N 230 LEU CD2 HD22 sing N N 231 LEU CD2 HD23 sing N N 232 LEU OXT HXT sing N N 233 LYS N CA sing N N 234 LYS N H sing N N 235 LYS N H2 sing N N 236 LYS CA C sing N N 237 LYS CA CB sing N N 238 LYS CA HA sing N N 239 LYS C O doub N N 240 LYS C OXT sing N N 241 LYS CB CG sing N N 242 LYS CB HB2 sing N N 243 LYS CB HB3 sing N N 244 LYS CG CD sing N N 245 LYS CG HG2 sing N N 246 LYS CG HG3 sing N N 247 LYS CD CE sing N N 248 LYS CD HD2 sing N N 249 LYS CD HD3 sing N N 250 LYS CE NZ sing N N 251 LYS CE HE2 sing N N 252 LYS CE HE3 sing N N 253 LYS NZ HZ1 sing N N 254 LYS NZ HZ2 sing N N 255 LYS NZ HZ3 sing N N 256 LYS OXT HXT sing N N 257 PHE N CA sing N N 258 PHE N H sing N N 259 PHE N H2 sing N N 260 PHE CA C sing N N 261 PHE CA CB sing N N 262 PHE CA HA sing N N 263 PHE C O doub N N 264 PHE C OXT sing N N 265 PHE CB CG sing N N 266 PHE CB HB2 sing N N 267 PHE CB HB3 sing N N 268 PHE CG CD1 doub Y N 269 PHE CG CD2 sing Y N 270 PHE CD1 CE1 sing Y N 271 PHE CD1 HD1 sing N N 272 PHE CD2 CE2 doub Y N 273 PHE CD2 HD2 sing N N 274 PHE CE1 CZ doub Y N 275 PHE CE1 HE1 sing N N 276 PHE CE2 CZ sing Y N 277 PHE CE2 HE2 sing N N 278 PHE CZ HZ sing N N 279 PHE OXT HXT sing N N 280 PRO N CA sing N N 281 PRO N CD sing N N 282 PRO N H sing N N 283 PRO CA C sing N N 284 PRO CA CB sing N N 285 PRO CA HA sing N N 286 PRO C O doub N N 287 PRO C OXT sing N N 288 PRO CB CG sing N N 289 PRO CB HB2 sing N N 290 PRO CB HB3 sing N N 291 PRO CG CD sing N N 292 PRO CG HG2 sing N N 293 PRO CG HG3 sing N N 294 PRO CD HD2 sing N N 295 PRO CD HD3 sing N N 296 PRO OXT HXT sing N N 297 SER N CA sing N N 298 SER N H sing N N 299 SER N H2 sing N N 300 SER CA C sing N N 301 SER CA CB sing N N 302 SER CA HA sing N N 303 SER C O doub N N 304 SER C OXT sing N N 305 SER CB OG sing N N 306 SER CB HB2 sing N N 307 SER CB HB3 sing N N 308 SER OG HG sing N N 309 SER OXT HXT sing N N 310 SO4 S O1 doub N N 311 SO4 S O2 doub N N 312 SO4 S O3 sing N N 313 SO4 S O4 sing N N 314 THR N CA sing N N 315 THR N H sing N N 316 THR N H2 sing N N 317 THR CA C sing N N 318 THR CA CB sing N N 319 THR CA HA sing N N 320 THR C O doub N N 321 THR C OXT sing N N 322 THR CB OG1 sing N N 323 THR CB CG2 sing N N 324 THR CB HB sing N N 325 THR OG1 HG1 sing N N 326 THR CG2 HG21 sing N N 327 THR CG2 HG22 sing N N 328 THR CG2 HG23 sing N N 329 THR OXT HXT sing N N 330 TRP N CA sing N N 331 TRP N H sing N N 332 TRP N H2 sing N N 333 TRP CA C sing N N 334 TRP CA CB sing N N 335 TRP CA HA sing N N 336 TRP C O doub N N 337 TRP C OXT sing N N 338 TRP CB CG sing N N 339 TRP CB HB2 sing N N 340 TRP CB HB3 sing N N 341 TRP CG CD1 doub Y N 342 TRP CG CD2 sing Y N 343 TRP CD1 NE1 sing Y N 344 TRP CD1 HD1 sing N N 345 TRP CD2 CE2 doub Y N 346 TRP CD2 CE3 sing Y N 347 TRP NE1 CE2 sing Y N 348 TRP NE1 HE1 sing N N 349 TRP CE2 CZ2 sing Y N 350 TRP CE3 CZ3 doub Y N 351 TRP CE3 HE3 sing N N 352 TRP CZ2 CH2 doub Y N 353 TRP CZ2 HZ2 sing N N 354 TRP CZ3 CH2 sing Y N 355 TRP CZ3 HZ3 sing N N 356 TRP CH2 HH2 sing N N 357 TRP OXT HXT sing N N 358 TYR N CA sing N N 359 TYR N H sing N N 360 TYR N H2 sing N N 361 TYR CA C sing N N 362 TYR CA CB sing N N 363 TYR CA HA sing N N 364 TYR C O doub N N 365 TYR C OXT sing N N 366 TYR CB CG sing N N 367 TYR CB HB2 sing N N 368 TYR CB HB3 sing N N 369 TYR CG CD1 doub Y N 370 TYR CG CD2 sing Y N 371 TYR CD1 CE1 sing Y N 372 TYR CD1 HD1 sing N N 373 TYR CD2 CE2 doub Y N 374 TYR CD2 HD2 sing N N 375 TYR CE1 CZ doub Y N 376 TYR CE1 HE1 sing N N 377 TYR CE2 CZ sing Y N 378 TYR CE2 HE2 sing N N 379 TYR CZ OH sing N N 380 TYR OH HH sing N N 381 TYR OXT HXT sing N N 382 VAL N CA sing N N 383 VAL N H sing N N 384 VAL N H2 sing N N 385 VAL CA C sing N N 386 VAL CA CB sing N N 387 VAL CA HA sing N N 388 VAL C O doub N N 389 VAL C OXT sing N N 390 VAL CB CG1 sing N N 391 VAL CB CG2 sing N N 392 VAL CB HB sing N N 393 VAL CG1 HG11 sing N N 394 VAL CG1 HG12 sing N N 395 VAL CG1 HG13 sing N N 396 VAL CG2 HG21 sing N N 397 VAL CG2 HG22 sing N N 398 VAL CG2 HG23 sing N N 399 VAL OXT HXT sing N N 400 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1PY3 _pdbx_initial_refinement_model.details 'PDB entry 1py3' # _atom_sites.entry_id 3D4A _atom_sites.fract_transf_matrix[1][1] 0.009850 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001901 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015172 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017878 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_