HEADER HYDROLASE 14-MAY-08 3D4I TITLE CRYSTAL STRUCTURE OF THE 2H-PHOSPHATASE DOMAIN OF STS-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: STS-2 PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: PGM DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: UBASH3A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX-HTB KEYWDS PGM, 2H-PHOSPHATASE, PTP, SH3 DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHEN,N.CARPINO,N.NASSAR REVDAT 4 13-JUL-11 3D4I 1 VERSN REVDAT 3 16-JUN-10 3D4I 1 JRNL REVDAT 2 24-MAR-09 3D4I 1 JRNL REVDAT 1 03-MAR-09 3D4I 0 JRNL AUTH Y.CHEN,J.JAKONCIC,N.CARPINO,N.NASSAR JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF THE JRNL TITL 2 2H-PHOSPHATASE DOMAIN OF STS-2 REVEALS AN ACID-DEPENDENT JRNL TITL 3 PHOSPHATASE ACTIVITY. JRNL REF BIOCHEMISTRY V. 48 1681 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19196006 JRNL DOI 10.1021/BI802219N REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 75929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5383 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 300 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8437 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 323 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.87000 REMARK 3 B22 (A**2) : 1.73000 REMARK 3 B33 (A**2) : -0.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.193 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.651 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8677 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11752 ; 1.330 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1061 ; 5.890 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 400 ;33.902 ;23.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1532 ;17.084 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 83 ;19.175 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1286 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6587 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4092 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5890 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 398 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 68 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.138 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5498 ; 0.868 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8628 ; 1.452 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3646 ; 1.924 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3124 ; 3.025 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 350 A 622 REMARK 3 ORIGIN FOR THE GROUP (A): -38.8906 122.1390 7.0869 REMARK 3 T TENSOR REMARK 3 T11: -0.0367 T22: -0.0039 REMARK 3 T33: -0.0136 T12: 0.0014 REMARK 3 T13: -0.0029 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.0910 L22: 0.4570 REMARK 3 L33: 1.0125 L12: -0.0185 REMARK 3 L13: 0.2421 L23: -0.2230 REMARK 3 S TENSOR REMARK 3 S11: 0.0108 S12: 0.0041 S13: -0.0366 REMARK 3 S21: 0.0144 S22: 0.0375 S23: 0.0544 REMARK 3 S31: -0.0585 S32: -0.1093 S33: -0.0483 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 358 B 621 REMARK 3 ORIGIN FOR THE GROUP (A): 1.1308 108.2370 7.9785 REMARK 3 T TENSOR REMARK 3 T11: -0.0527 T22: 0.0284 REMARK 3 T33: -0.0454 T12: 0.0241 REMARK 3 T13: 0.0080 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.7118 L22: 0.4064 REMARK 3 L33: 1.2954 L12: 0.2960 REMARK 3 L13: -0.2078 L23: -0.2227 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: 0.0786 S13: 0.0687 REMARK 3 S21: 0.0701 S22: 0.0020 S23: 0.0346 REMARK 3 S31: 0.0653 S32: 0.1652 S33: -0.0003 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 358 C 620 REMARK 3 ORIGIN FOR THE GROUP (A): -14.3484 137.2992 26.0144 REMARK 3 T TENSOR REMARK 3 T11: -0.0035 T22: -0.0313 REMARK 3 T33: -0.0289 T12: -0.0147 REMARK 3 T13: -0.0125 T23: 0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.6209 L22: 0.5496 REMARK 3 L33: 0.4751 L12: 0.4331 REMARK 3 L13: 0.0470 L23: 0.0674 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: -0.0266 S13: -0.0410 REMARK 3 S21: 0.0489 S22: -0.0553 S23: -0.0436 REMARK 3 S31: -0.0712 S32: 0.0028 S33: 0.0009 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 358 D 621 REMARK 3 ORIGIN FOR THE GROUP (A): -25.9164 95.8509 25.5214 REMARK 3 T TENSOR REMARK 3 T11: -0.0115 T22: -0.0300 REMARK 3 T33: -0.0140 T12: -0.0033 REMARK 3 T13: 0.0245 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.5044 L22: 0.4346 REMARK 3 L33: 0.4171 L12: -0.1832 REMARK 3 L13: 0.0103 L23: -0.3037 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: -0.0009 S13: -0.0814 REMARK 3 S21: -0.0075 S22: 0.0111 S23: 0.0640 REMARK 3 S31: 0.0346 S32: 0.0274 S33: -0.0423 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3D4I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-08. REMARK 100 THE RCSB ID CODE IS RCSB047581. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80016 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50000 REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4000,0.2 M LITHIUM SULFATE, 5 REMARK 280 TO 20 MM STRONTIUM CHLORIDE, 0.1 M TRIS-HCL, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.94350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.61100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.85350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.61100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.94350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.85350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 350 REMARK 465 MET B 351 REMARK 465 GLY B 352 REMARK 465 SER B 353 REMARK 465 ALA B 354 REMARK 465 THR B 355 REMARK 465 ILE B 356 REMARK 465 SER B 357 REMARK 465 SER B 622 REMARK 465 ALA C 350 REMARK 465 MET C 351 REMARK 465 GLY C 352 REMARK 465 SER C 353 REMARK 465 ALA C 354 REMARK 465 THR C 355 REMARK 465 ILE C 356 REMARK 465 SER C 357 REMARK 465 ILE C 621 REMARK 465 SER C 622 REMARK 465 ALA D 350 REMARK 465 MET D 351 REMARK 465 GLY D 352 REMARK 465 SER D 353 REMARK 465 ALA D 354 REMARK 465 THR D 355 REMARK 465 ILE D 356 REMARK 465 SER D 622 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS C 586 CB CYS C 586 SG -0.120 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 499 30.98 71.70 REMARK 500 SER A 550 -147.67 -152.61 REMARK 500 LEU A 583 17.63 57.62 REMARK 500 ASP B 386 8.32 -63.39 REMARK 500 ALA B 482 -84.93 -43.68 REMARK 500 SER B 483 -173.92 73.26 REMARK 500 LYS B 484 -44.55 15.83 REMARK 500 ASP B 542 34.36 -78.73 REMARK 500 SER B 550 -145.12 -153.95 REMARK 500 LYS C 484 -45.44 -27.86 REMARK 500 CYS C 539 96.21 160.71 REMARK 500 GLN C 541 -6.72 86.48 REMARK 500 ASP C 542 109.01 -59.80 REMARK 500 SER C 550 -144.23 -152.56 REMARK 500 SER D 550 -148.28 -156.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL C 441 24.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HOQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE 2H-PHOSPHATASE DOMAIN OF STS-1 DBREF 3D4I A 354 622 UNP Q8BX41 Q8BX41_MOUSE 181 449 DBREF 3D4I B 354 622 UNP Q8BX41 Q8BX41_MOUSE 181 449 DBREF 3D4I C 354 622 UNP Q8BX41 Q8BX41_MOUSE 181 449 DBREF 3D4I D 354 622 UNP Q8BX41 Q8BX41_MOUSE 181 449 SEQADV 3D4I ALA A 350 UNP Q8BX41 EXPRESSION TAG SEQADV 3D4I MET A 351 UNP Q8BX41 EXPRESSION TAG SEQADV 3D4I GLY A 352 UNP Q8BX41 EXPRESSION TAG SEQADV 3D4I SER A 353 UNP Q8BX41 EXPRESSION TAG SEQADV 3D4I ILE A 364 UNP Q8BX41 VAL 191 CONFLICT SEQADV 3D4I ALA B 350 UNP Q8BX41 EXPRESSION TAG SEQADV 3D4I MET B 351 UNP Q8BX41 EXPRESSION TAG SEQADV 3D4I GLY B 352 UNP Q8BX41 EXPRESSION TAG SEQADV 3D4I SER B 353 UNP Q8BX41 EXPRESSION TAG SEQADV 3D4I ILE B 364 UNP Q8BX41 VAL 191 CONFLICT SEQADV 3D4I ALA C 350 UNP Q8BX41 EXPRESSION TAG SEQADV 3D4I MET C 351 UNP Q8BX41 EXPRESSION TAG SEQADV 3D4I GLY C 352 UNP Q8BX41 EXPRESSION TAG SEQADV 3D4I SER C 353 UNP Q8BX41 EXPRESSION TAG SEQADV 3D4I ILE C 364 UNP Q8BX41 VAL 191 CONFLICT SEQADV 3D4I ALA D 350 UNP Q8BX41 EXPRESSION TAG SEQADV 3D4I MET D 351 UNP Q8BX41 EXPRESSION TAG SEQADV 3D4I GLY D 352 UNP Q8BX41 EXPRESSION TAG SEQADV 3D4I SER D 353 UNP Q8BX41 EXPRESSION TAG SEQADV 3D4I ILE D 364 UNP Q8BX41 VAL 191 CONFLICT SEQRES 1 A 273 ALA MET GLY SER ALA THR ILE SER ARG ARG GLY ILE LEU SEQRES 2 A 273 VAL ILE ARG HIS GLY GLU ARG VAL ASP GLN VAL PHE GLY SEQRES 3 A 273 LYS SER TRP LEU GLN GLN CYS THR THR ALA ASP GLY LYS SEQRES 4 A 273 TYR TYR ARG PRO ASP LEU ASN PHE PRO ARG SER LEU PRO SEQRES 5 A 273 ARG ARG SER ASN GLY ILE LYS ASP PHE GLU ASN ASP PRO SEQRES 6 A 273 PRO LEU SER SER CYS GLY ILE PHE GLN ALA ARG LEU ALA SEQRES 7 A 273 GLY GLU ALA LEU LEU ASP SER GLY VAL ARG VAL THR ALA SEQRES 8 A 273 VAL PHE ALA SER PRO ALA LEU ARG CYS VAL GLN THR ALA SEQRES 9 A 273 LYS HIS ILE LEU GLU GLU LEU LYS LEU GLU LYS LYS LEU SEQRES 10 A 273 LYS ILE ARG VAL GLU PRO GLY ILE PHE GLU TRP MET LYS SEQRES 11 A 273 TRP GLU ALA SER LYS ALA THR LEU THR PHE LEU THR LEU SEQRES 12 A 273 GLU GLU LEU LYS GLU ALA ASN PHE ASN VAL ASP LEU ASP SEQRES 13 A 273 TYR ARG PRO ALA LEU PRO ARG CYS SER LEU MET PRO ALA SEQRES 14 A 273 GLU SER TYR ASP GLN TYR VAL GLU ARG CYS ALA VAL SER SEQRES 15 A 273 MET GLY GLN ILE ILE ASN THR CYS PRO GLN ASP MET GLY SEQRES 16 A 273 ILE THR LEU ILE VAL SER HIS SER SER ALA LEU ASP SER SEQRES 17 A 273 CYS THR ARG PRO LEU LEU GLY LEU PRO PRO ARG GLU CYS SEQRES 18 A 273 GLY ASP PHE ALA GLN LEU VAL ARG LYS ILE PRO SER LEU SEQRES 19 A 273 GLY MET CYS PHE CYS GLU GLU ASN ARG GLU ASP GLY LYS SEQRES 20 A 273 TRP ASP LEU VAL ASN PRO PRO VAL LYS THR LEU THR HIS SEQRES 21 A 273 GLY ALA ASN SER VAL PHE ASN TRP ARG ASN TRP ILE SER SEQRES 1 B 273 ALA MET GLY SER ALA THR ILE SER ARG ARG GLY ILE LEU SEQRES 2 B 273 VAL ILE ARG HIS GLY GLU ARG VAL ASP GLN VAL PHE GLY SEQRES 3 B 273 LYS SER TRP LEU GLN GLN CYS THR THR ALA ASP GLY LYS SEQRES 4 B 273 TYR TYR ARG PRO ASP LEU ASN PHE PRO ARG SER LEU PRO SEQRES 5 B 273 ARG ARG SER ASN GLY ILE LYS ASP PHE GLU ASN ASP PRO SEQRES 6 B 273 PRO LEU SER SER CYS GLY ILE PHE GLN ALA ARG LEU ALA SEQRES 7 B 273 GLY GLU ALA LEU LEU ASP SER GLY VAL ARG VAL THR ALA SEQRES 8 B 273 VAL PHE ALA SER PRO ALA LEU ARG CYS VAL GLN THR ALA SEQRES 9 B 273 LYS HIS ILE LEU GLU GLU LEU LYS LEU GLU LYS LYS LEU SEQRES 10 B 273 LYS ILE ARG VAL GLU PRO GLY ILE PHE GLU TRP MET LYS SEQRES 11 B 273 TRP GLU ALA SER LYS ALA THR LEU THR PHE LEU THR LEU SEQRES 12 B 273 GLU GLU LEU LYS GLU ALA ASN PHE ASN VAL ASP LEU ASP SEQRES 13 B 273 TYR ARG PRO ALA LEU PRO ARG CYS SER LEU MET PRO ALA SEQRES 14 B 273 GLU SER TYR ASP GLN TYR VAL GLU ARG CYS ALA VAL SER SEQRES 15 B 273 MET GLY GLN ILE ILE ASN THR CYS PRO GLN ASP MET GLY SEQRES 16 B 273 ILE THR LEU ILE VAL SER HIS SER SER ALA LEU ASP SER SEQRES 17 B 273 CYS THR ARG PRO LEU LEU GLY LEU PRO PRO ARG GLU CYS SEQRES 18 B 273 GLY ASP PHE ALA GLN LEU VAL ARG LYS ILE PRO SER LEU SEQRES 19 B 273 GLY MET CYS PHE CYS GLU GLU ASN ARG GLU ASP GLY LYS SEQRES 20 B 273 TRP ASP LEU VAL ASN PRO PRO VAL LYS THR LEU THR HIS SEQRES 21 B 273 GLY ALA ASN SER VAL PHE ASN TRP ARG ASN TRP ILE SER SEQRES 1 C 273 ALA MET GLY SER ALA THR ILE SER ARG ARG GLY ILE LEU SEQRES 2 C 273 VAL ILE ARG HIS GLY GLU ARG VAL ASP GLN VAL PHE GLY SEQRES 3 C 273 LYS SER TRP LEU GLN GLN CYS THR THR ALA ASP GLY LYS SEQRES 4 C 273 TYR TYR ARG PRO ASP LEU ASN PHE PRO ARG SER LEU PRO SEQRES 5 C 273 ARG ARG SER ASN GLY ILE LYS ASP PHE GLU ASN ASP PRO SEQRES 6 C 273 PRO LEU SER SER CYS GLY ILE PHE GLN ALA ARG LEU ALA SEQRES 7 C 273 GLY GLU ALA LEU LEU ASP SER GLY VAL ARG VAL THR ALA SEQRES 8 C 273 VAL PHE ALA SER PRO ALA LEU ARG CYS VAL GLN THR ALA SEQRES 9 C 273 LYS HIS ILE LEU GLU GLU LEU LYS LEU GLU LYS LYS LEU SEQRES 10 C 273 LYS ILE ARG VAL GLU PRO GLY ILE PHE GLU TRP MET LYS SEQRES 11 C 273 TRP GLU ALA SER LYS ALA THR LEU THR PHE LEU THR LEU SEQRES 12 C 273 GLU GLU LEU LYS GLU ALA ASN PHE ASN VAL ASP LEU ASP SEQRES 13 C 273 TYR ARG PRO ALA LEU PRO ARG CYS SER LEU MET PRO ALA SEQRES 14 C 273 GLU SER TYR ASP GLN TYR VAL GLU ARG CYS ALA VAL SER SEQRES 15 C 273 MET GLY GLN ILE ILE ASN THR CYS PRO GLN ASP MET GLY SEQRES 16 C 273 ILE THR LEU ILE VAL SER HIS SER SER ALA LEU ASP SER SEQRES 17 C 273 CYS THR ARG PRO LEU LEU GLY LEU PRO PRO ARG GLU CYS SEQRES 18 C 273 GLY ASP PHE ALA GLN LEU VAL ARG LYS ILE PRO SER LEU SEQRES 19 C 273 GLY MET CYS PHE CYS GLU GLU ASN ARG GLU ASP GLY LYS SEQRES 20 C 273 TRP ASP LEU VAL ASN PRO PRO VAL LYS THR LEU THR HIS SEQRES 21 C 273 GLY ALA ASN SER VAL PHE ASN TRP ARG ASN TRP ILE SER SEQRES 1 D 273 ALA MET GLY SER ALA THR ILE SER ARG ARG GLY ILE LEU SEQRES 2 D 273 VAL ILE ARG HIS GLY GLU ARG VAL ASP GLN VAL PHE GLY SEQRES 3 D 273 LYS SER TRP LEU GLN GLN CYS THR THR ALA ASP GLY LYS SEQRES 4 D 273 TYR TYR ARG PRO ASP LEU ASN PHE PRO ARG SER LEU PRO SEQRES 5 D 273 ARG ARG SER ASN GLY ILE LYS ASP PHE GLU ASN ASP PRO SEQRES 6 D 273 PRO LEU SER SER CYS GLY ILE PHE GLN ALA ARG LEU ALA SEQRES 7 D 273 GLY GLU ALA LEU LEU ASP SER GLY VAL ARG VAL THR ALA SEQRES 8 D 273 VAL PHE ALA SER PRO ALA LEU ARG CYS VAL GLN THR ALA SEQRES 9 D 273 LYS HIS ILE LEU GLU GLU LEU LYS LEU GLU LYS LYS LEU SEQRES 10 D 273 LYS ILE ARG VAL GLU PRO GLY ILE PHE GLU TRP MET LYS SEQRES 11 D 273 TRP GLU ALA SER LYS ALA THR LEU THR PHE LEU THR LEU SEQRES 12 D 273 GLU GLU LEU LYS GLU ALA ASN PHE ASN VAL ASP LEU ASP SEQRES 13 D 273 TYR ARG PRO ALA LEU PRO ARG CYS SER LEU MET PRO ALA SEQRES 14 D 273 GLU SER TYR ASP GLN TYR VAL GLU ARG CYS ALA VAL SER SEQRES 15 D 273 MET GLY GLN ILE ILE ASN THR CYS PRO GLN ASP MET GLY SEQRES 16 D 273 ILE THR LEU ILE VAL SER HIS SER SER ALA LEU ASP SER SEQRES 17 D 273 CYS THR ARG PRO LEU LEU GLY LEU PRO PRO ARG GLU CYS SEQRES 18 D 273 GLY ASP PHE ALA GLN LEU VAL ARG LYS ILE PRO SER LEU SEQRES 19 D 273 GLY MET CYS PHE CYS GLU GLU ASN ARG GLU ASP GLY LYS SEQRES 20 D 273 TRP ASP LEU VAL ASN PRO PRO VAL LYS THR LEU THR HIS SEQRES 21 D 273 GLY ALA ASN SER VAL PHE ASN TRP ARG ASN TRP ILE SER HET CL B 1 1 HETNAM CL CHLORIDE ION FORMUL 5 CL CL 1- FORMUL 6 HOH *323(H2 O) HELIX 1 1 ARG A 369 GLY A 375 1 7 HELIX 2 2 SER A 377 CYS A 382 1 6 HELIX 3 3 ASN A 405 ASP A 413 5 9 HELIX 4 4 SER A 417 GLY A 435 1 19 HELIX 5 5 ALA A 446 LEU A 460 1 15 HELIX 6 6 PRO A 472 PHE A 475 5 4 HELIX 7 7 TRP A 477 GLU A 481 5 5 HELIX 8 8 LYS A 484 PHE A 489 5 6 HELIX 9 9 THR A 491 ALA A 498 1 8 HELIX 10 10 PRO A 511 LEU A 515 5 5 HELIX 11 11 SER A 520 ASN A 537 1 18 HELIX 12 12 SER A 553 CYS A 558 1 6 HELIX 13 13 THR A 559 GLY A 564 1 6 HELIX 14 14 GLU A 569 LYS A 579 1 11 HELIX 15 15 ASN A 616 ILE A 621 1 6 HELIX 16 16 ARG B 369 GLY B 375 1 7 HELIX 17 17 SER B 377 THR B 383 1 7 HELIX 18 18 ILE B 407 ASN B 412 5 6 HELIX 19 19 SER B 417 GLY B 435 1 19 HELIX 20 20 ALA B 446 LYS B 461 1 16 HELIX 21 21 PRO B 472 PHE B 475 5 4 HELIX 22 22 TRP B 477 GLU B 481 5 5 HELIX 23 23 THR B 491 ALA B 498 1 8 HELIX 24 24 PRO B 511 LEU B 515 5 5 HELIX 25 25 SER B 520 CYS B 539 1 20 HELIX 26 26 HIS B 551 CYS B 558 1 8 HELIX 27 27 GLU B 569 LYS B 579 1 11 HELIX 28 28 ASN B 616 ILE B 621 1 6 HELIX 29 29 ARG C 369 GLY C 375 1 7 HELIX 30 30 SER C 377 CYS C 382 1 6 HELIX 31 31 LYS C 408 ASP C 413 1 6 HELIX 32 32 SER C 417 GLY C 435 1 19 HELIX 33 33 ALA C 446 LEU C 460 1 15 HELIX 34 34 PRO C 472 PHE C 475 5 4 HELIX 35 35 TRP C 477 GLU C 481 5 5 HELIX 36 36 THR C 491 ALA C 498 1 8 HELIX 37 37 PRO C 511 LEU C 515 5 5 HELIX 38 38 SER C 520 THR C 538 1 19 HELIX 39 39 HIS C 551 CYS C 558 1 8 HELIX 40 40 GLU C 569 ARG C 578 1 10 HELIX 41 41 ASN C 616 TRP C 620 5 5 HELIX 42 42 ARG D 369 GLY D 375 1 7 HELIX 43 43 SER D 377 CYS D 382 1 6 HELIX 44 44 GLY D 406 GLU D 411 5 6 HELIX 45 45 SER D 417 SER D 434 1 18 HELIX 46 46 ALA D 446 LYS D 461 1 16 HELIX 47 47 PRO D 472 PHE D 475 5 4 HELIX 48 48 TRP D 477 GLU D 481 5 5 HELIX 49 49 LYS D 484 PHE D 489 5 6 HELIX 50 50 THR D 491 ALA D 498 1 8 HELIX 51 51 PRO D 511 LEU D 515 5 5 HELIX 52 52 SER D 520 ILE D 536 1 17 HELIX 53 53 SER D 553 CYS D 558 1 6 HELIX 54 54 THR D 559 GLY D 564 1 6 HELIX 55 55 GLU D 569 ARG D 578 1 10 HELIX 56 56 ASN D 616 ILE D 621 1 6 SHEET 1 A 6 ILE A 468 VAL A 470 0 SHEET 2 A 6 VAL A 438 ALA A 443 1 N VAL A 441 O ARG A 469 SHEET 3 A 6 ILE A 545 SER A 550 1 O VAL A 549 N PHE A 442 SHEET 4 A 6 GLY A 360 ARG A 365 1 N ILE A 364 O ILE A 548 SHEET 5 A 6 MET A 585 GLU A 590 -1 O CYS A 586 N VAL A 363 SHEET 6 A 6 TRP A 597 VAL A 600 -1 O VAL A 600 N PHE A 587 SHEET 1 B 6 ILE B 468 VAL B 470 0 SHEET 2 B 6 VAL B 438 ALA B 443 1 N VAL B 441 O ARG B 469 SHEET 3 B 6 ILE B 545 SER B 550 1 O VAL B 549 N PHE B 442 SHEET 4 B 6 GLY B 360 ARG B 365 1 N ILE B 364 O ILE B 548 SHEET 5 B 6 MET B 585 ASN B 591 -1 O CYS B 586 N VAL B 363 SHEET 6 B 6 LYS B 596 VAL B 600 -1 O LYS B 596 N ASN B 591 SHEET 1 C 6 ILE C 468 VAL C 470 0 SHEET 2 C 6 VAL C 438 ALA C 443 1 N VAL C 441 O ARG C 469 SHEET 3 C 6 ILE C 545 SER C 550 1 O VAL C 549 N PHE C 442 SHEET 4 C 6 GLY C 360 ARG C 365 1 N ILE C 364 O ILE C 548 SHEET 5 C 6 MET C 585 ASN C 591 -1 O CYS C 586 N VAL C 363 SHEET 6 C 6 LYS C 596 VAL C 600 -1 O LYS C 596 N ASN C 591 SHEET 1 D 6 ILE D 468 VAL D 470 0 SHEET 2 D 6 VAL D 438 ALA D 443 1 N VAL D 441 O ARG D 469 SHEET 3 D 6 ILE D 545 SER D 550 1 O VAL D 549 N PHE D 442 SHEET 4 D 6 GLY D 360 ARG D 365 1 N ILE D 364 O ILE D 548 SHEET 5 D 6 MET D 585 GLU D 590 -1 O CYS D 586 N VAL D 363 SHEET 6 D 6 TRP D 597 VAL D 600 -1 O VAL D 600 N PHE D 587 SSBOND 1 CYS A 513 CYS B 513 1555 1455 2.86 SITE 1 AC1 1 LYS B 376 CRYST1 77.887 115.707 121.222 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012839 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008249 0.00000