HEADER HYDROLASE/HYDROLASE INHIBITOR 15-MAY-08 3D4U TITLE BOVINE THROMBIN-ACTIVATABLE FIBRINOLYSIS INHIBITOR (TAFIA) IN COMPLEX TITLE 2 WITH TICK-DERIVED CARBOXYPEPTIDASE INHIBITOR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOXYPEPTIDASE B2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TAFIA; COMPND 5 EC: 3.4.17.20; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CARBOXYPEPTIDASE INHIBITOR; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: TICK CARBOXYPEPTIDASE INHIBITOR, TCI; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 TISSUE: BLOOD; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: RHIPICEPHALUS BURSA; SOURCE 8 ORGANISM_TAXID: 67831; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21/DE3; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PBAT-4-OMPA-TCI KEYWDS PROTEASE-INHIBITOR COMPLEX, CARBOXYPEPTIDASE, GLYCOPROTEIN, KEYWDS 2 HYDROLASE, METAL-BINDING, METALLOPROTEASE, PROTEASE, SECRETED, KEYWDS 3 ZYMOGEN, BLOOD COAGULATION, FIBRINOLYSIS, METALLOENZYME INHIBITOR, KEYWDS 4 METALLOPROTEASE INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.SANGLAS,Z.VALNICKOVA,J.L.AROLAS,I.PALLARES,T.GUEVARA,M.SOLA, AUTHOR 2 T.KRISTENSEN,J.J.ENGHILD,F.X.AVILES,F.X.GOMIS-RUTH REVDAT 7 30-OCT-24 3D4U 1 REMARK REVDAT 6 01-NOV-23 3D4U 1 REMARK LINK REVDAT 5 13-JUL-11 3D4U 1 VERSN REVDAT 4 29-SEP-09 3D4U 1 JRNL REVDAT 3 24-FEB-09 3D4U 1 VERSN REVDAT 2 02-SEP-08 3D4U 1 JRNL REVDAT 1 19-AUG-08 3D4U 0 JRNL AUTH L.SANGLAS,Z.VALNICKOVA,J.L.AROLAS,I.PALLARES,T.GUEVARA, JRNL AUTH 2 M.SOLA,T.KRISTENSEN,J.J.ENGHILD,F.X.AVILES,F.X.GOMIS-RUTH JRNL TITL STRUCTURE OF ACTIVATED THROMBIN-ACTIVATABLE FIBRINOLYSIS JRNL TITL 2 INHIBITOR, A MOLECULAR LINK BETWEEN COAGULATION AND JRNL TITL 3 FIBRINOLYSIS. JRNL REF MOL.CELL V. 31 598 2008 JRNL REFN ISSN 1097-2765 JRNL PMID 18722183 JRNL DOI 10.1016/J.MOLCEL.2008.05.031 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.BARBOSA PEREIRA,B.OLIVA,C.FERRER-ORTA,M.COLL,J.VENDRELL REMARK 1 TITL HUMAN PROCARBOXYPEPTIDASE B: THREE-DIMENSIONAL STRUCTURE AND REMARK 1 TITL 2 IMPLICATIONS FOR THROMBIN-ACTIVATABLE FIBRINOLYSIS INHIBITOR REMARK 1 TITL 3 (TAFI) REMARK 1 REF J.MOL.BIOL. V. 321 537 2002 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 12162965 REMARK 1 DOI 10.1016/S0022-2836(02)00648-4 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 57265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.200 REMARK 3 FREE R VALUE TEST SET COUNT : 695 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3795 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2968 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 358 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.053 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3103 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4192 ; 1.345 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 5.646 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;28.796 ;23.239 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 534 ;13.473 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;15.732 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 424 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2340 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1476 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2083 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 282 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.010 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.186 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.196 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1906 ; 0.960 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2961 ; 1.462 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1424 ; 2.302 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1231 ; 3.663 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 54 REMARK 3 RESIDUE RANGE : A 59 A 92 REMARK 3 RESIDUE RANGE : A 98 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0042 22.8801 82.6778 REMARK 3 T TENSOR REMARK 3 T11: -0.0677 T22: -0.0862 REMARK 3 T33: -0.0778 T12: -0.0025 REMARK 3 T13: -0.0035 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.9347 L22: 0.6823 REMARK 3 L33: 0.8980 L12: 0.0953 REMARK 3 L13: 0.0126 L23: 0.0455 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: -0.1059 S13: -0.0221 REMARK 3 S21: 0.1300 S22: -0.0453 S23: -0.0370 REMARK 3 S31: 0.0432 S32: 0.0280 S33: 0.0308 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 74 REMARK 3 ORIGIN FOR THE GROUP (A): -2.3345 34.4379 93.4675 REMARK 3 T TENSOR REMARK 3 T11: -0.0402 T22: -0.0260 REMARK 3 T33: -0.0711 T12: 0.0301 REMARK 3 T13: 0.0461 T23: -0.0455 REMARK 3 L TENSOR REMARK 3 L11: 3.6940 L22: 2.5063 REMARK 3 L33: 1.1221 L12: 1.4113 REMARK 3 L13: 0.0891 L23: 1.0161 REMARK 3 S TENSOR REMARK 3 S11: 0.0957 S12: -0.3512 S13: 0.1706 REMARK 3 S21: 0.2874 S22: -0.0947 S23: 0.2410 REMARK 3 S31: -0.0322 S32: -0.0625 S33: -0.0010 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 601 A 607 REMARK 3 RESIDUE RANGE : A 2357 A 2635 REMARK 3 RESIDUE RANGE : B 514 B 859 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0174 25.3780 83.7947 REMARK 3 T TENSOR REMARK 3 T11: -0.0406 T22: -0.0391 REMARK 3 T33: -0.0426 T12: -0.0015 REMARK 3 T13: 0.0024 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.9691 L22: 1.0192 REMARK 3 L33: 1.0652 L12: 0.0249 REMARK 3 L13: -0.1338 L23: 0.0247 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: -0.1103 S13: 0.0252 REMARK 3 S21: 0.1248 S22: -0.0541 S23: 0.0104 REMARK 3 S31: 0.0077 S32: -0.0089 S33: 0.0379 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3D4U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047593. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : HORIZONTALLY DIFFRACTING SI REMARK 200 (111) MONOCHROMATOR AND PT REMARK 200 COATED MIRRORS IN A KIRKPATRICK- REMARK 200 BAEZ (KB) GEOMETRY AS THE REMARK 200 FOCUSING SYSTEM REMARK 200 OPTICS : HORIZONTALLY DIFFRACTING SI REMARK 200 (111) MONOCHROMATOR AND PT REMARK 200 COATED MIRRORS IN A KIRKPATRICK- REMARK 200 BAEZ (KB) GEOMETRY AS THE REMARK 200 FOCUSING SYSTEM. REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57962 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 15.10 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : 0.09900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 0.61100 REMARK 200 R SYM FOR SHELL (I) : 0.61100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 9.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1ZLI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M (NH4)2SO4, 0.1M NAACO, 10% PEG REMARK 280 4000, PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.26667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.63333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.63333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 85.26667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 LYS A 54A REMARK 465 GLU A 55 REMARK 465 GLN A 56 REMARK 465 ARG A 57 REMARK 465 ALA A 58 REMARK 465 GLU A 93 REMARK 465 LYS A 94 REMARK 465 MET A 95 REMARK 465 HIS A 96 REMARK 465 THR A 97 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2532 O HOH A 2610 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 122 -51.66 -128.72 REMARK 500 ASN A 129 -161.29 -78.24 REMARK 500 SER A 199 0.58 129.88 REMARK 500 GLN A 200 70.18 60.02 REMARK 500 LEU A 247 -84.85 -111.31 REMARK 500 TYR A 248 161.07 179.48 REMARK 500 ALA A 250 78.51 -162.60 REMARK 500 ASP A 273 -144.67 -108.45 REMARK 500 LEU A 280 45.93 -89.67 REMARK 500 PHE B 8 -162.38 -110.84 REMARK 500 THR B 29 -118.34 -99.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 309 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 ND1 REMARK 620 2 GLU A 72 OE2 102.0 REMARK 620 3 HIS A 196 ND1 100.1 135.9 REMARK 620 4 LEU B 74 O 94.6 89.8 125.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 607 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZLI RELATED DB: PDB REMARK 900 HUMAN CARBOXYPEPTIDASE B IN COMPLEX WITH TICK-DERIVED REMARK 900 CARBOXYPEPTIDASE INHIBITOR REMARK 900 RELATED ID: 1KWM RELATED DB: PDB REMARK 900 HUMAN PROCARBOXYPEPTIDASE B DBREF 3D4U A 4 308 UNP Q2KIG3 CBPB2_BOVIN 115 423 DBREF 3D4U B 1 74 UNP Q5EPH2 TCI1_RHIBU 23 96 SEQRES 1 A 309 ALA SER SER SER TYR TYR GLU GLN TYR HIS SER LEU ASN SEQRES 2 A 309 GLU ILE TYR SER TRP ILE GLU VAL MET THR GLU ARG TYR SEQRES 3 A 309 PRO ASP MET VAL GLU LYS ILE HIS ILE GLY SER SER TYR SEQRES 4 A 309 GLU LYS TYR PRO LEU TYR VAL LEU LYS VAL SER LYS LYS SEQRES 5 A 309 GLU GLN ARG ALA LYS ASN ALA MET TRP ILE ASP CYS GLY SEQRES 6 A 309 ILE HIS ALA ARG GLU TRP ILE SER PRO ALA PHE CYS LEU SEQRES 7 A 309 TRP PHE VAL GLY SER VAL THR TYR TYR TYR GLY LYS GLU SEQRES 8 A 309 LYS MET HIS THR ASN LEU LEU LYS HIS MET ASP PHE TYR SEQRES 9 A 309 ILE MET PRO VAL VAL ASN VAL ASP GLY TYR ASP TYR THR SEQRES 10 A 309 TRP LYS LYS ASP ARG MET TRP ARG LYS ASN ARG SER LEU SEQRES 11 A 309 HIS GLU LYS ASN ALA CYS VAL GLY THR ASP LEU ASN ARG SEQRES 12 A 309 ASN PHE ALA SER LYS HIS TRP CYS GLY GLU GLY ALA SER SEQRES 13 A 309 SER SER SER CYS SER GLU ILE TYR CYS GLY THR TYR PRO SEQRES 14 A 309 GLU SER GLU PRO GLU VAL LYS ALA VAL ALA ASP PHE LEU SEQRES 15 A 309 ARG ARG ASN ILE LYS HIS ILE LYS ALA TYR ILE SER MET SEQRES 16 A 309 HIS SER TYR SER GLN LYS ILE VAL PHE PRO TYR SER TYR SEQRES 17 A 309 SER ARG SER ARG SER LYS ASP HIS GLU GLU LEU SER LEU SEQRES 18 A 309 VAL ALA ARG GLU ALA VAL PHE ALA MET GLU ASN ILE HIS SEQRES 19 A 309 ARG ASN ILE ARG TYR THR HIS GLY SER GLY SER GLU SER SEQRES 20 A 309 LEU TYR LEU ALA PRO GLY GLY SER ASP ASP TRP ILE TYR SEQRES 21 A 309 ASP LEU GLY ILE LYS TYR SER PHE THR PHE GLU LEU ARG SEQRES 22 A 309 ASP LYS GLY LYS TYR GLY PHE LEU LEU PRO GLU SER TYR SEQRES 23 A 309 ILE ARG PRO THR CYS SER GLU ALA LEU VAL ALA VAL ALA SEQRES 24 A 309 LYS ILE ALA SER HIS VAL VAL LYS ASN VAL SEQRES 1 B 74 ASN GLU CYS VAL SER LYS GLY PHE GLY CYS LEU PRO GLN SEQRES 2 B 74 SER ASP CYS PRO GLN GLU ALA ARG LEU SER TYR GLY GLY SEQRES 3 B 74 CYS SER THR VAL CYS CYS ASP LEU SER LYS LEU THR GLY SEQRES 4 B 74 CYS LYS GLY LYS GLY GLY GLU CYS ASN PRO LEU ASP ARG SEQRES 5 B 74 GLN CYS LYS GLU LEU GLN ALA GLU SER ALA SER CYS GLY SEQRES 6 B 74 LYS GLY GLN LYS CYS CYS VAL TRP LEU HET ZN A 309 1 HET ACT A 601 4 HET ACT A 602 4 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION FORMUL 3 ZN ZN 2+ FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 6 SO4 5(O4 S 2-) FORMUL 11 HOH *358(H2 O) HELIX 1 1 SER A 7 GLN A 11 5 5 HELIX 2 2 SER A 14 TYR A 29 1 16 HELIX 3 3 TRP A 73 TYR A 89 1 17 HELIX 4 4 ASN A 112 LYS A 122 1 11 HELIX 5 5 ASP A 142 ASN A 146 5 5 HELIX 6 6 GLU A 173 ASN A 186 1 14 HELIX 7 7 ASP A 215 HIS A 234 1 20 HELIX 8 8 GLY A 243 LEU A 247 1 5 HELIX 9 9 GLY A 253 GLY A 262 1 10 HELIX 10 10 PRO A 282 SER A 284 5 3 HELIX 11 11 TYR A 285 VAL A 308 1 24 HELIX 12 12 ASN B 1 LYS B 6 1 6 HELIX 13 13 PRO B 12 CYS B 16 5 5 HELIX 14 14 PRO B 17 GLU B 19 5 3 HELIX 15 15 LEU B 34 LEU B 37 5 4 HELIX 16 16 CYS B 40 GLY B 44 5 5 HELIX 17 17 LEU B 57 ALA B 62 1 6 HELIX 18 18 SER B 63 GLY B 65 5 3 SHEET 1 A 8 VAL A 33 SER A 40 0 SHEET 2 A 8 PRO A 46 VAL A 52 -1 O LEU A 47 N ILE A 38 SHEET 3 A 8 ASP A 104 MET A 108 -1 O ILE A 107 N LEU A 50 SHEET 4 A 8 ALA A 61 ASP A 65 1 N ILE A 64 O TYR A 106 SHEET 5 A 8 ILE A 189 HIS A 196 1 O LYS A 190 N ALA A 61 SHEET 6 A 8 TYR A 265 GLU A 270 1 O PHE A 269 N HIS A 196 SHEET 7 A 8 LYS A 201 PHE A 204 -1 N LYS A 201 O GLU A 270 SHEET 8 A 8 THR A 239 SER A 242 1 O THR A 239 N ILE A 202 SHEET 1 B 3 GLY B 9 LEU B 11 0 SHEET 2 B 3 VAL B 30 CYS B 32 -1 O CYS B 32 N GLY B 9 SHEET 3 B 3 ARG B 21 LEU B 22 -1 N LEU B 22 O CYS B 31 SHEET 1 C 2 GLU B 46 PRO B 49 0 SHEET 2 C 2 GLN B 68 CYS B 71 -1 O LYS B 69 N ASN B 48 SSBOND 1 CYS A 66 CYS A 79 1555 1555 2.04 SSBOND 2 CYS A 138 CYS A 161 1555 1555 2.01 SSBOND 3 CYS A 152 CYS A 166 1555 1555 2.07 SSBOND 4 CYS B 3 CYS B 31 1555 1555 2.04 SSBOND 5 CYS B 10 CYS B 27 1555 1555 2.05 SSBOND 6 CYS B 16 CYS B 32 1555 1555 2.05 SSBOND 7 CYS B 40 CYS B 70 1555 1555 2.06 SSBOND 8 CYS B 47 CYS B 64 1555 1555 2.09 SSBOND 9 CYS B 54 CYS B 71 1555 1555 2.09 LINK ND1 HIS A 69 ZN ZN A 309 1555 1555 2.09 LINK OE2 GLU A 72 ZN ZN A 309 1555 1555 2.01 LINK ND1 HIS A 196 ZN ZN A 309 1555 1555 2.08 LINK ZN ZN A 309 O LEU B 74 1555 1555 2.12 CISPEP 1 SER A 197 TYR A 198 0 -0.34 CISPEP 2 PRO A 205 TYR A 206 0 2.93 CISPEP 3 ARG A 272 ASP A 273 0 -1.71 SITE 1 AC1 4 HIS A 69 GLU A 72 HIS A 196 LEU B 74 SITE 1 AC2 6 HIS A 69 ARG A 127 ASN A 144 ARG A 145 SITE 2 AC2 6 TYR A 248 LEU B 74 SITE 1 AC3 4 PRO A 46 LEU A 47 TYR A 48 PRO A 109 SITE 1 AC4 3 SER A 157 SER A 158 ARG B 52 SITE 1 AC5 4 TYR A 208 SER A 209 SER A 211 HIS A1501 SITE 1 AC6 3 HIS A 216 SER A 220 ARG A 224 SITE 1 AC7 2 SER A 14 ASN A 16 SITE 1 AC8 5 LYS A 135 ASN A 136 ALA A 137 SER A 160 SITE 2 AC8 5 CYS A 161 CRYST1 84.200 84.200 127.900 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011876 0.006857 0.000000 0.00000 SCALE2 0.000000 0.013714 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007819 0.00000