HEADER GENE REGULATION 16-MAY-08 3D5P TITLE CRYSTAL STRUCTURE OF A PUTATIVE GLUCAN SYNTHESIS REGULATOR OF TITLE 2 SMI1/KNR4 FAMILY (BF1740) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 1.45 TITLE 3 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GLUCAN SYNTHESIS REGULATOR OF SMI1/KNR4 FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS NCTC 9343; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 GENE: YP_211376.1, BF1740; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE GLUCAN SYNTHESIS REGULATOR OF SMI1/KNR4 FAMILY, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3D5P 1 REMARK SEQADV REVDAT 6 24-JUL-19 3D5P 1 REMARK LINK REVDAT 5 25-OCT-17 3D5P 1 REMARK REVDAT 4 13-JUL-11 3D5P 1 VERSN REVDAT 3 28-JUL-10 3D5P 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3D5P 1 VERSN REVDAT 1 15-JUL-08 3D5P 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE GLUCAN SYNTHESIS REGULATOR OF JRNL TITL 2 SMI1/KNR4 FAMILY (YP_211376.1) FROM BACTEROIDES FRAGILIS JRNL TITL 3 NCTC 9343 AT 1.45 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 52409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2676 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3020 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2138 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 335 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 15.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.001 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2474 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1618 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3374 ; 1.677 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3974 ; 1.418 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 317 ; 5.803 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;32.071 ;25.478 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 412 ;14.591 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;20.154 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 346 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2880 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 519 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1488 ; 1.369 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 612 ; 0.375 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2403 ; 2.250 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 986 ; 1.847 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 971 ; 2.718 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 132 REMARK 3 ORIGIN FOR THE GROUP (A): 47.0064 42.3661 12.3956 REMARK 3 T TENSOR REMARK 3 T11: -0.0115 T22: -0.0176 REMARK 3 T33: -0.0253 T12: 0.0177 REMARK 3 T13: -0.0268 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.4467 L22: 1.2399 REMARK 3 L33: 0.4093 L12: -0.1259 REMARK 3 L13: -0.0366 L23: 0.2917 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.0166 S13: 0.0030 REMARK 3 S21: -0.1295 S22: -0.0632 S23: 0.1283 REMARK 3 S31: -0.0932 S32: -0.0944 S33: 0.0777 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 132 REMARK 3 ORIGIN FOR THE GROUP (A): 50.0730 16.9378 9.1665 REMARK 3 T TENSOR REMARK 3 T11: -0.0218 T22: -0.0073 REMARK 3 T33: -0.0145 T12: -0.0041 REMARK 3 T13: -0.0033 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.3904 L22: 0.5432 REMARK 3 L33: 0.3584 L12: 0.0578 REMARK 3 L13: 0.0826 L23: 0.0951 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: -0.0028 S13: -0.0480 REMARK 3 S21: 0.0380 S22: -0.0126 S23: 0.0377 REMARK 3 S31: 0.0088 S32: -0.0407 S33: 0.0116 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 4. ACETATE (ACT) IONS, GLYCEROL (GOL) REMARK 3 AND PEG4000 FRAGMENT (PEG) MOLECULES FROM CRYSTALLIZATION REMARK 3 WERE MODELED. REMARK 4 REMARK 4 3D5P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047624. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97916,0.97852 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52450 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 29.683 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.55800 REMARK 200 R SYM FOR SHELL (I) : 0.55800 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15.0000% GLYCEROL, 0.1700M NH4OAC, REMARK 280 25.5000% PEG-4000, 0.1M CITRATE PH 5.6, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.52900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.54650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.75400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.54650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.52900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.75400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS AND ANALYTICAL REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY SUPPORT THE ASSIGNMENT OF A DIMER AS REMARK 300 A SIGNIFICANT OLIGOMERIC STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 133 REMARK 465 GLN A 134 REMARK 465 ASN A 135 REMARK 465 VAL A 136 REMARK 465 ALA A 137 REMARK 465 ASN A 138 REMARK 465 ASN A 139 REMARK 465 ASN A 140 REMARK 465 LEU A 141 REMARK 465 THR A 142 REMARK 465 THR A 143 REMARK 465 LEU B 133 REMARK 465 GLN B 134 REMARK 465 ASN B 135 REMARK 465 VAL B 136 REMARK 465 ALA B 137 REMARK 465 ASN B 138 REMARK 465 ASN B 139 REMARK 465 ASN B 140 REMARK 465 LEU B 141 REMARK 465 THR B 142 REMARK 465 THR B 143 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 24 CE NZ REMARK 470 LYS A 32 CD CE NZ REMARK 470 LYS A 72 NZ REMARK 470 LYS A 76 CD CE NZ REMARK 470 GLU A 77 OE1 OE2 REMARK 470 LYS A 112 CD CE NZ REMARK 470 LYS A 132 NZ REMARK 470 LYS B 24 CE NZ REMARK 470 LYS B 32 CD CE NZ REMARK 470 LYS B 72 NZ REMARK 470 LYS B 112 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 74 -109.42 -99.79 REMARK 500 ASN A 96 -2.94 75.44 REMARK 500 ASP A 105 62.55 -154.30 REMARK 500 LEU B 74 -123.25 -100.81 REMARK 500 LEU B 74 -119.15 -100.81 REMARK 500 ASN B 96 -2.87 76.67 REMARK 500 ASP B 105 63.74 -150.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE B 4 -10.93 REMARK 500 ILE B 4 10.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 148 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 149 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 388451 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3D5P A 1 143 UNP Q5LEL2 Q5LEL2_BACFN 1 143 DBREF 3D5P B 1 143 UNP Q5LEL2 Q5LEL2_BACFN 1 143 SEQADV 3D5P GLY A 0 UNP Q5LEL2 EXPRESSION TAG SEQADV 3D5P GLY B 0 UNP Q5LEL2 EXPRESSION TAG SEQRES 1 A 144 GLY MSE GLU VAL ILE GLU SER LYS TRP TYR LYS LYS ASP SEQRES 2 A 144 GLY ALA SER SER ALA SER ILE ASP ASP VAL GLU LYS LEU SEQRES 3 A 144 LEU ASN THR THR LEU PRO LYS GLN TYR LYS SER PHE LEU SEQRES 4 A 144 LEU TRP SER ASN GLY GLY GLU GLY LYS LEU GLY ASP ASN SEQRES 5 A 144 TYR ILE TYR ILE TRP ALA ILE GLU ASP VAL ILE ALA TYR SEQRES 6 A 144 ASN HIS ASP TYR GLY ILE GLN LYS TYR LEU GLN LYS GLU SEQRES 7 A 144 TYR TRP ALA PHE GLY MSE ASP GLY ASP ILE GLY TYR ILE SEQRES 8 A 144 LEU HIS LEU SER ASP ASN SER ILE TYR ARG VAL ASP LEU SEQRES 9 A 144 GLY ASP LEU ASP ILE THR SER ILE LYS TYR ILE ALA PRO SEQRES 10 A 144 SER PHE ASP ASP PHE LEU GLY LYS ALA ILE TYR LEU ASN SEQRES 11 A 144 PHE ASN LYS LEU GLN ASN VAL ALA ASN ASN ASN LEU THR SEQRES 12 A 144 THR SEQRES 1 B 144 GLY MSE GLU VAL ILE GLU SER LYS TRP TYR LYS LYS ASP SEQRES 2 B 144 GLY ALA SER SER ALA SER ILE ASP ASP VAL GLU LYS LEU SEQRES 3 B 144 LEU ASN THR THR LEU PRO LYS GLN TYR LYS SER PHE LEU SEQRES 4 B 144 LEU TRP SER ASN GLY GLY GLU GLY LYS LEU GLY ASP ASN SEQRES 5 B 144 TYR ILE TYR ILE TRP ALA ILE GLU ASP VAL ILE ALA TYR SEQRES 6 B 144 ASN HIS ASP TYR GLY ILE GLN LYS TYR LEU GLN LYS GLU SEQRES 7 B 144 TYR TRP ALA PHE GLY MSE ASP GLY ASP ILE GLY TYR ILE SEQRES 8 B 144 LEU HIS LEU SER ASP ASN SER ILE TYR ARG VAL ASP LEU SEQRES 9 B 144 GLY ASP LEU ASP ILE THR SER ILE LYS TYR ILE ALA PRO SEQRES 10 B 144 SER PHE ASP ASP PHE LEU GLY LYS ALA ILE TYR LEU ASN SEQRES 11 B 144 PHE ASN LYS LEU GLN ASN VAL ALA ASN ASN ASN LEU THR SEQRES 12 B 144 THR MODRES 3D5P MSE A 1 MET SELENOMETHIONINE MODRES 3D5P MSE A 83 MET SELENOMETHIONINE MODRES 3D5P MSE B 1 MET SELENOMETHIONINE MODRES 3D5P MSE B 83 MET SELENOMETHIONINE HET MSE A 1 16 HET MSE A 83 8 HET MSE B 1 16 HET MSE B 83 8 HET ACT A 144 4 HET ACT B 144 4 HET ACT B 145 4 HET GOL B 146 6 HET GOL B 147 6 HET GOL B 148 6 HET PEG B 149 7 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 ACT 3(C2 H3 O2 1-) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 9 PEG C4 H10 O3 FORMUL 10 HOH *335(H2 O) HELIX 1 1 SER A 15 ASN A 27 1 13 HELIX 2 2 PRO A 31 SER A 41 1 11 HELIX 3 3 ALA A 57 GLU A 59 5 3 HELIX 4 4 ASP A 60 GLY A 69 1 10 HELIX 5 5 GLY A 69 LEU A 74 1 6 HELIX 6 6 ASP A 107 ILE A 111 5 5 HELIX 7 7 SER A 117 ILE A 126 1 10 HELIX 8 8 SER B 15 ASN B 27 1 13 HELIX 9 9 PRO B 31 SER B 41 1 11 HELIX 10 10 ALA B 57 GLY B 69 1 13 HELIX 11 11 GLY B 69 LEU B 74 1 6 HELIX 12 12 ASP B 107 ILE B 111 5 5 HELIX 13 13 SER B 117 LEU B 128 1 12 SHEET 1 A 9 GLU A 2 ILE A 4 0 SHEET 2 A 9 GLU B 2 LYS B 10 -1 O TRP B 8 N ILE A 4 SHEET 3 A 9 SER A 6 LYS A 10 -1 N TRP A 8 O ILE B 4 SHEET 4 A 9 GLY A 44 LEU A 48 -1 O GLU A 45 N TYR A 9 SHEET 5 A 9 ASN A 51 ILE A 55 -1 O ILE A 55 N GLY A 44 SHEET 6 A 9 TYR A 78 ASP A 84 -1 O MSE A 83 N TYR A 54 SHEET 7 A 9 ILE A 87 HIS A 92 -1 O LEU A 91 N TRP A 79 SHEET 8 A 9 ILE A 98 ASP A 102 -1 O TYR A 99 N ILE A 90 SHEET 9 A 9 LYS A 112 ALA A 115 -1 O ILE A 114 N ILE A 98 SHEET 1 B 8 GLU A 2 ILE A 4 0 SHEET 2 B 8 GLU B 2 LYS B 10 -1 O TRP B 8 N ILE A 4 SHEET 3 B 8 GLY B 44 LEU B 48 -1 O GLU B 45 N TYR B 9 SHEET 4 B 8 ASN B 51 ILE B 55 -1 O ILE B 55 N GLY B 44 SHEET 5 B 8 TYR B 78 ASP B 84 -1 O MSE B 83 N TYR B 54 SHEET 6 B 8 ILE B 87 HIS B 92 -1 O LEU B 91 N TRP B 79 SHEET 7 B 8 ILE B 98 ASP B 102 -1 O VAL B 101 N GLY B 88 SHEET 8 B 8 LYS B 112 ALA B 115 -1 O ILE B 114 N ILE B 98 LINK C GLY A 0 N AMSE A 1 1555 1555 1.34 LINK C GLY A 0 N BMSE A 1 1555 1555 1.34 LINK C AMSE A 1 N AGLU A 2 1555 1555 1.34 LINK C BMSE A 1 N BGLU A 2 1555 1555 1.33 LINK C GLY A 82 N MSE A 83 1555 1555 1.32 LINK C MSE A 83 N ASP A 84 1555 1555 1.33 LINK C GLY B 0 N AMSE B 1 1555 1555 1.32 LINK C GLY B 0 N BMSE B 1 1555 1555 1.34 LINK C AMSE B 1 N GLU B 2 1555 1555 1.33 LINK C BMSE B 1 N GLU B 2 1555 1555 1.32 LINK C GLY B 82 N MSE B 83 1555 1555 1.34 LINK C MSE B 83 N ASP B 84 1555 1555 1.32 SITE 1 AC1 5 TYR A 73 LEU A 103 GLY A 104 ASP A 105 SITE 2 AC1 5 LEU A 106 SITE 1 AC2 4 LEU B 103 GLY B 104 ASP B 105 LEU B 106 SITE 1 AC3 3 GLU B 23 THR B 28 THR B 29 SITE 1 AC4 5 ASP B 12 LEU B 26 LYS B 76 TRP B 79 SITE 2 AC4 5 LEU B 93 SITE 1 AC5 3 ASP A 86 LYS B 47 TYR B 52 SITE 1 AC6 4 LYS A 47 TYR A 52 TYR B 68 ASP B 86 SITE 1 AC7 2 ILE B 62 TRP B 79 CRYST1 57.058 69.508 75.093 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017526 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013317 0.00000